Warning: Permanently added '54.88.58.254' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6723831-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.70 PID: 14998 Logging PID: 14999 Task: {'appstream': False, 'background': True, 'build_id': 6723831, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '69fe3b6ae7b429e720c611243425898ad586bc6d', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83/dolfin', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'dolfin', 'package_version': '2019.1.0.post0-47', 'project_dirname': 'boost-1.83', 'project_name': 'boost-1.83', 'project_owner': 'ppalka', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ppalka/boost-1.83/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'ppalka/boost-1.83--ppalka', 'source_json': {}, 'source_type': None, 'submitter': 'ppalka', 'tags': [], 'task_id': '6723831-fedora-rawhide-x86_64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83/dolfin /var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83/dolfin', '/var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin'... Running: git checkout 69fe3b6ae7b429e720c611243425898ad586bc6d -- cmd: ['git', 'checkout', '69fe3b6ae7b429e720c611243425898ad586bc6d', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin rc: 0 stdout: stderr: Note: switching to '69fe3b6ae7b429e720c611243425898ad586bc6d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 69fe3b6 automatic import of dolfin Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading dolfin-2019.1.0.post0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o dolfin-2019.1.0.post0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ppalka/boost-1.83/dolfin/dolfin-2019.1.0.post0.tar.gz/md5/79a564ec8f605b8ec434366828e84b60/dolfin-2019.1.0.post0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 10.2M 100 10.2M 0 0 117M 0 --:--:-- --:--:-- --:--:-- 118M /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Reading stdout from command: md5sum dolfin-2019.1.0.post0.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin/dolfin.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1701706770.381639 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin/dolfin.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1701706770.381639 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin/dolfin.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.2 INFO: Mock Version: 5.2 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1701706770.381639/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1701706770.381639/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/6b84d969583eab0c41f489d3b55e82f78ada08ef1320e9fb113e0d98a3d2c934/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/6b84d969583eab0c41f489d3b55e82f78ada08ef1320e9fb113e0d98a3d2c934/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 10 MB/s | 508 kB 00:00 fedora 67 MB/s | 72 MB 00:01 Package python3-dnf-4.18.1-2.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.3-1.fc40 fedora 317 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k python3-dateutil noarch 1:2.8.2-11.fc40 fedora 356 k python3-dbus x86_64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd x86_64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.2 M Installed size: 3.6 M Downloading Packages: (1/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm 8.4 MB/s | 157 kB 00:00 (2/7): python3-dateutil-2.8.2-11.fc40.noarch.rp 15 MB/s | 356 kB 00:00 (3/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm 6.1 MB/s | 155 kB 00:00 (4/7): python3-distro-1.8.0-6.fc39.noarch.rpm 7.1 MB/s | 49 kB 00:00 (5/7): python3-six-1.16.0-12.fc39.noarch.rpm 13 MB/s | 41 kB 00:00 (6/7): python3-systemd-235-5.fc39.x86_64.rpm 13 MB/s | 107 kB 00:00 (7/7): python3-dnf-plugins-core-4.4.3-1.fc40.no 26 MB/s | 317 kB 00:00 -------------------------------------------------------------------------------- Total 14 MB/s | 1.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.x86_64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 5/7 Installing : python3-dbus-1.3.2-4.fc39.x86_64 6/7 Installing : python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.x86_64 python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1701706770.381639/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 98 kB/s | 1.5 kB 00:00 Copr repository 12 MB/s | 514 kB 00:00 fedora 73 kB/s | 21 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.21-2.fc40 fedora 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.4-1.fc40 fedora 1.1 M cpio x86_64 2.14-5.fc40 fedora 280 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 40-0.20 fedora 20 k findutils x86_64 1:4.9.0-6.fc40 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38.9000-26.fc40 fedora 85 k grep x86_64 3.11-5.fc40 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.1-1.fc40 fedora 184 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 271-1.fc40 fedora 81 k rpm-build x86_64 4.19.0-3.fc40 fedora 79 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc40 fedora 1.3 M tar x86_64 2:1.35-2.fc40 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.2-1.fc40 fedora 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.5-1.fc40 fedora 557 k Installing dependencies: alternatives x86_64 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs x86_64 3.1.2-5.fc40 fedora 117 k authselect x86_64 1.4.3-1.fc40 fedora 149 k authselect-libs x86_64 1.4.3-1.fc40 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.41-15.fc40 fedora 6.3 M binutils-gold x86_64 2.41-15.fc40 fedora 797 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 fedora 863 k coreutils-common x86_64 9.4-1.fc40 fedora 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231113-1.gitb402e82.fc40 fedora 99 k curl x86_64 8.4.0-1.fc40 fedora 362 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-11.fc40 fedora 77 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.190-4.fc40 fedora 550 k elfutils-debuginfod-client x86_64 0.190-4.fc40 fedora 38 k elfutils-default-yama-scope noarch 0.190-4.fc40 fedora 13 k elfutils-libelf x86_64 0.190-4.fc40 fedora 194 k elfutils-libs x86_64 0.190-4.fc40 fedora 259 k fedora-gpg-keys noarch 40-0.2 fedora 130 k fedora-release noarch 40-0.20 fedora 9.3 k fedora-release-identity-basic noarch 40-0.20 fedora 10 k fedora-repos noarch 40-0.2 fedora 9.3 k fedora-repos-rawhide noarch 40-0.2 fedora 8.9 k file x86_64 5.45-1.fc40 fedora 49 k file-libs x86_64 5.45-1.fc40 fedora 763 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 13.2-12.fc40 fedora 4.2 M gdbm x86_64 1:1.23-4.fc39 fedora 155 k gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-3.fc40 fedora 8.1 k glibc x86_64 2.38.9000-26.fc40 fedora 2.2 M glibc-common x86_64 2.38.9000-26.fc40 fedora 367 k glibc-gconv-extra x86_64 2.38.9000-26.fc40 fedora 1.7 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.3.1-1.fc40 fedora 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k krb5-libs x86_64 1.21.2-2.fc40 fedora 765 k libacl x86_64 2.3.1-11.fc40 fedora 24 k libarchive x86_64 3.7.2-1.fc40 fedora 408 k libattr x86_64 2.5.1-9.fc40 fedora 18 k libblkid x86_64 2.39.2-1.fc40 fedora 116 k libbrotli x86_64 1.1.0-1.fc40 fedora 336 k libcap x86_64 2.69-1.fc40 fedora 83 k libcap-ng x86_64 0.8.3-8.fc40 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.4.0-1.fc40 fedora 343 k libeconf x86_64 0.5.2-1.fc40 fedora 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.2-1.fc40 fedora 162 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-5.fc40 fedora 112 k libgomp x86_64 13.2.1-5.fc40 fedora 321 k libidn2 x86_64 2.3.4-3.fc39 fedora 117 k libmount x86_64 2.39.2-1.fc40 fedora 154 k libnghttp2 x86_64 1.58.0-1.fc40 fedora 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.6-0.rc2.1.fc40 fedora 88 k libsemanage x86_64 3.6-0.rc2.1.fc40 fedora 116 k libsepol x86_64 3.6-0.rc2.1.fc40 fedora 340 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.2-1.fc40 fedora 67 k libssh x86_64 0.10.5-2.fc39 fedora 211 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ x86_64 13.2.1-5.fc40 fedora 864 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-0.fc40 fedora 94 k libunistring x86_64 1.1-5.fc40 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.2-1.fc40 fedora 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.12.1-1.fc40 fedora 699 k libzstd x86_64 1.5.5-4.fc39 fedora 309 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.1-1.fc40 fedora 343 k ncurses-base noarch 6.4-8.20231001.fc40 fedora 88 k ncurses-libs x86_64 6.4-8.20231001.fc40 fedora 338 k ocaml-srpm-macros noarch 9-1.fc40 fedora 9.0 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.4-1.fc40 fedora 2.2 M p11-kit x86_64 0.25.3-1.fc40 fedora 522 k p11-kit-trust x86_64 0.25.3-1.fc40 fedora 142 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-8.fc40 fedora 547 k pam-libs x86_64 1.5.3-8.fc40 fedora 57 k pcre2 x86_64 10.42-2.fc40 fedora 233 k pcre2-syntax noarch 10.42-2.fc40 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.10.0-1.fc40 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.11-1.fc40 fedora 8.3 k qt6-srpm-macros noarch 6.6.1-1.fc40 fedora 8.6 k readline x86_64 8.2-4.fc39 fedora 213 k rpm x86_64 4.19.0-3.fc40 fedora 537 k rpm-build-libs x86_64 4.19.0-3.fc40 fedora 96 k rpm-libs x86_64 4.19.0-3.fc40 fedora 313 k rpm-sequoia x86_64 1.5.0-2.fc40 fedora 879 k rust-srpm-macros noarch 25.2-2.fc40 fedora 13 k setup noarch 2.14.5-1.fc40 fedora 155 k sqlite-libs x86_64 3.44.1-1.fc40 fedora 693 k systemd-libs x86_64 255~rc4-3.fc40 fedora 702 k util-linux-core x86_64 2.39.2-1.fc40 fedora 493 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.5-1.fc40 fedora 108 k zip x86_64 3.0-39.fc40 fedora 266 k zlib x86_64 1.2.13-5.fc40 fedora 94 k zstd x86_64 1.5.5-4.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 52 M Installed size: 180 M Downloading Packages: [SKIPPED] alternatives-1.25-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.3-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.3-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.21-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.41-15.fc40.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.41-15.fc40.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.4-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.4-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.14-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20231113-1.gitb402e82.fc40.noarch.rpm: Already downloaded [SKIPPED] curl-8.4.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-11.fc40.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.10-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.190-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.190-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.190-4.fc40.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.190-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.190-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-40-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-release-40-0.20.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-40-0.20.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-40-0.20.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-40-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-40-0.2.noarch.rpm: Already downloaded [SKIPPED] file-5.45-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.45-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] forge-srpm-macros-0.1.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-8.fc39.noarch.rpm: Already downloaded [SKIPPED] gawk-5.2.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-13.2-12.fc40.x86_64.rpm: Already downloaded [SKIPPED] gdbm-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-3.fc40.noarch.rpm: Already downloaded [SKIPPED] glibc-2.38.9000-26.fc40.x86_64.rpm: Already downloaded [SKIPPED] 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/usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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Installing : gawk-5.2.2-2.fc39.x86_64 102/152 Installing : libverto-0.3.2-6.fc39.x86_64 103/152 Installing : xxhash-libs-0.8.2-1.fc39.x86_64 104/152 Installing : libssh-config-0.10.5-2.fc39.noarch 105/152 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 106/152 Installing : gnat-srpm-macros-6-3.fc39.noarch 107/152 Installing : ghc-srpm-macros-1.6.1-3.fc40.noarch 108/152 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 109/152 Installing : coreutils-common-9.4-1.fc40.x86_64 110/152 Installing : openssl-libs-1:3.1.4-1.fc40.x86_64 111/152 Installing : coreutils-9.4-1.fc40.x86_64 112/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : krb5-libs-1.21.2-2.fc40.x86_64 114/152 Installing : libtirpc-1.3.4-0.fc40.x86_64 115/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : gzip-1.12-6.fc39.x86_64 117/152 Installing : cracklib-2.9.11-2.fc39.x86_64 118/152 Installing : libpwquality-1.4.5-6.fc39.x86_64 119/152 Installing : authselect-1.4.3-1.fc40.x86_64 120/152 Installing : libnsl2-2.0.0-6.fc39.x86_64 121/152 Installing : pam-1.5.3-8.fc40.x86_64 122/152 Installing : libssh-0.10.5-2.fc39.x86_64 123/152 Installing : libarchive-3.7.2-1.fc40.x86_64 124/152 Installing : libevent-2.1.12-9.fc39.x86_64 125/152 Installing : openldap-2.6.6-1.fc39.x86_64 126/152 Installing : libcurl-8.4.0-1.fc40.x86_64 127/152 Installing : elfutils-libs-0.190-4.fc40.x86_64 128/152 Installing : elfutils-debuginfod-client-0.190-4.fc40.x86_64 129/152 Installing : binutils-gold-2.41-15.fc40.x86_64 130/152 Running scriptlet: binutils-gold-2.41-15.fc40.x86_64 130/152 Installing : binutils-2.41-15.fc40.x86_64 131/152 Running scriptlet: binutils-2.41-15.fc40.x86_64 131/152 Installing : elfutils-0.190-4.fc40.x86_64 132/152 Installing : gdb-minimal-13.2-12.fc40.x86_64 133/152 Installing : debugedit-5.0-11.fc40.x86_64 134/152 Installing : curl-8.4.0-1.fc40.x86_64 135/152 Installing : rpm-sequoia-1.5.0-2.fc40.x86_64 136/152 Installing : rpm-libs-4.19.0-3.fc40.x86_64 137/152 Running scriptlet: rpm-4.19.0-3.fc40.x86_64 138/152 Installing : rpm-4.19.0-3.fc40.x86_64 138/152 Installing : efi-srpm-macros-5-9.fc39.noarch 139/152 Installing : lua-srpm-macros-1-9.fc39.noarch 140/152 Installing : rpm-build-libs-4.19.0-3.fc40.x86_64 141/152 Installing : ansible-srpm-macros-1-11.fc39.noarch 142/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/152 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 144/152 Installing : go-srpm-macros-3.3.1-1.fc40.noarch 145/152 Installing : python-srpm-macros-3.12-4.fc40.noarch 146/152 Installing : redhat-rpm-config-271-1.fc40.noarch 147/152 Installing : rpm-build-4.19.0-3.fc40.x86_64 148/152 Installing : pyproject-srpm-macros-1.10.0-1.fc40.noarch 149/152 Installing : util-linux-2.39.2-1.fc40.x86_64 150/152 Installing : which-2.21-40.fc39.x86_64 151/152 Installing : info-7.1-1.fc40.x86_64 152/152 Running scriptlet: filesystem-3.18-6.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 152/152 Running scriptlet: rpm-4.19.0-3.fc40.x86_64 152/152 Running scriptlet: info-7.1-1.fc40.x86_64 152/152 Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-15.fc40.x86_64 binutils-gold-2.41-15.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc40.noarch curl-8.4.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-11.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.x86_64 elfutils-debuginfod-client-0.190-4.fc40.x86_64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.x86_64 elfutils-libs-0.190-4.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc40.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-12.fc40.x86_64 gdbm-1:1.23-4.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-26.fc40.x86_64 glibc-common-2.38.9000-26.fc40.x86_64 glibc-gconv-extra-2.38.9000-26.fc40.x86_64 glibc-minimal-langpack-2.38.9000-26.fc40.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-11.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.4.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-5.fc40.x86_64 libgomp-13.2.1-5.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-0.rc2.1.fc40.x86_64 libsemanage-3.6-0.rc2.1.fc40.x86_64 libsepol-3.6-0.rc2.1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-5.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.1-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-8.fc40.x86_64 pam-libs-1.5.3-8.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.1-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.0-3.fc40.x86_64 rpm-build-4.19.0-3.fc40.x86_64 rpm-build-libs-4.19.0-3.fc40.x86_64 rpm-libs-4.19.0-3.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.5-1.fc40.noarch shadow-utils-2:4.14.0-2.fc40.x86_64 sqlite-libs-3.44.1-1.fc40.x86_64 systemd-libs-255~rc4-3.fc40.x86_64 tar-2:1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-15.fc40.x86_64 binutils-gold-2.41-15.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc40.noarch curl-8.4.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-11.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.x86_64 elfutils-debuginfod-client-0.190-4.fc40.x86_64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.x86_64 elfutils-libs-0.190-4.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc40.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-12.fc40.x86_64 gdbm-1.23-4.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-26.fc40.x86_64 glibc-common-2.38.9000-26.fc40.x86_64 glibc-gconv-extra-2.38.9000-26.fc40.x86_64 glibc-minimal-langpack-2.38.9000-26.fc40.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-11.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.4.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-5.fc40.x86_64 libgomp-13.2.1-5.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-0.rc2.1.fc40.x86_64 libsemanage-3.6-0.rc2.1.fc40.x86_64 libsepol-3.6-0.rc2.1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-5.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.1-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-8.fc40.x86_64 pam-libs-1.5.3-8.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.1-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.0-3.fc40.x86_64 rpm-build-4.19.0-3.fc40.x86_64 rpm-build-libs-4.19.0-3.fc40.x86_64 rpm-libs-4.19.0-3.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.x86_64 sqlite-libs-3.44.1-1.fc40.x86_64 systemd-libs-255~rc4-3.fc40.x86_64 tar-1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1697414400 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-47.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1701706770.381639/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1701706770.381639/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1701706770.381639/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ff30qnxj/dolfin/dolfin.spec) Config(child) 0 minutes 29 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-47.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1701706770.381639/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1701706770.381639/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1701706770.381639/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-3.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 python3-dnf-4.18.1-2.fc40.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch yum-4.18.1-2.fc40.noarch Start: build phase for dolfin-2019.1.0.post0-47.fc40.src.rpm Start: build setup for dolfin-2019.1.0.post0-47.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1697414400 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-47.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 88 kB/s | 1.5 kB 00:00 Copr repository 17 MB/s | 549 kB 00:00 fedora 211 kB/s | 21 kB 00:00 Package pkgconf-1.9.5-2.fc39.x86_64 is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: boost-devel x86_64 1.83.0-0.fc40 copr_base 12 M chrpath x86_64 0.16-21.fc39 fedora 30 k cmake x86_64 3.27.7-1.fc40 fedora 8.0 M eigen3-devel noarch 3.4.0-12.fc39 fedora 1.2 M flexiblas-devel x86_64 3.3.1-5.fc39 fedora 117 k gcc-c++ x86_64 13.2.1-5.fc40 fedora 13 M gnupg2 x86_64 2.4.3-4.fc40 fedora 2.6 M hdf5-devel x86_64 1.12.1-15.fc40 fedora 1.3 M make x86_64 1:4.4.1-2.fc39 fedora 589 k petsc-devel x86_64 3.20.1-2.fc40 fedora 2.5 M pybind11-devel x86_64 2.11.1-1.fc39 fedora 176 k python3-devel x86_64 3.12.0-2.fc40 fedora 311 k python3-dijitso noarch 2019.1.0-15.fc39 fedora 88 k python3-ffc noarch 2019.1.0.post0-17.fc39 fedora 705 k python3-numpy x86_64 1:1.26.0-2.fc40 fedora 7.5 M python3-setuptools noarch 68.2.2-1.fc40 fedora 1.5 M python3-ufl noarch 2019.1.0-17.fc39 fedora 530 k scotch-devel x86_64 7.0.4-2.fc40 fedora 25 k sundials-devel x86_64 6.6.2-3.fc40 fedora 929 k zlib-devel x86_64 1.2.13-5.fc40 fedora 45 k Installing dependencies: Lmod x86_64 8.7.32-1.fc40 fedora 261 k SuperLU x86_64 6.0.1-1.fc40 fedora 186 k SuperLUMT-common noarch 3.1.0-36.fc39 fedora 642 k SuperLUMT64-double x86_64 3.1.0-36.fc39 fedora 82 k annobin-docs noarch 12.32-1.fc40 fedora 92 k annobin-plugin-gcc x86_64 12.32-1.fc40 fedora 959 k boost x86_64 1.83.0-0.fc40 copr_base 14 k boost-atomic x86_64 1.83.0-0.fc40 copr_base 20 k boost-chrono x86_64 1.83.0-0.fc40 copr_base 26 k boost-container x86_64 1.83.0-0.fc40 copr_base 40 k boost-context x86_64 1.83.0-0.fc40 copr_base 17 k boost-contract x86_64 1.83.0-0.fc40 copr_base 46 k boost-coroutine x86_64 1.83.0-0.fc40 copr_base 20 k boost-date-time x86_64 1.83.0-0.fc40 copr_base 16 k boost-fiber x86_64 1.83.0-0.fc40 copr_base 42 k boost-filesystem x86_64 1.83.0-0.fc40 copr_base 68 k boost-graph x86_64 1.83.0-0.fc40 copr_base 152 k boost-iostreams x86_64 1.83.0-0.fc40 copr_base 42 k boost-json x86_64 1.83.0-0.fc40 copr_base 143 k boost-locale x86_64 1.83.0-0.fc40 copr_base 212 k boost-log x86_64 1.83.0-0.fc40 copr_base 493 k boost-math x86_64 1.83.0-0.fc40 copr_base 218 k boost-nowide x86_64 1.83.0-0.fc40 copr_base 21 k boost-numpy3 x86_64 1.83.0-0.fc40 copr_base 30 k boost-program-options x86_64 1.83.0-0.fc40 copr_base 110 k boost-python3 x86_64 1.83.0-0.fc40 copr_base 97 k boost-random x86_64 1.83.0-0.fc40 copr_base 24 k boost-regex x86_64 1.83.0-0.fc40 copr_base 112 k boost-serialization x86_64 1.83.0-0.fc40 copr_base 135 k boost-stacktrace x86_64 1.83.0-0.fc40 copr_base 30 k boost-system x86_64 1.83.0-0.fc40 copr_base 16 k boost-test x86_64 1.83.0-0.fc40 copr_base 240 k boost-thread x86_64 1.83.0-0.fc40 copr_base 62 k boost-timer x86_64 1.83.0-0.fc40 copr_base 22 k boost-type_erasure x86_64 1.83.0-0.fc40 copr_base 34 k boost-wave x86_64 1.83.0-0.fc40 copr_base 225 k cmake-data noarch 3.27.7-1.fc40 fedora 2.2 M cmake-filesystem x86_64 3.27.7-1.fc40 fedora 19 k cmake-rpm-macros noarch 3.27.7-1.fc40 fedora 19 k cpp x86_64 13.2.1-5.fc40 fedora 11 M emacs-filesystem noarch 1:29.1-14.fc40 fedora 7.4 k expat x86_64 2.5.0-3.fc39 fedora 110 k flexiblas x86_64 3.3.1-5.fc39 fedora 33 k flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M flexiblas-netlib64 x86_64 3.3.1-5.fc39 fedora 3.0 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k flexiblas-openblas-openmp64 x86_64 3.3.1-5.fc39 fedora 17 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-5.fc40 fedora 34 M gcc-gfortran x86_64 13.2.1-5.fc40 fedora 12 M gcc-plugin-annobin x86_64 13.2.1-5.fc40 fedora 49 k glibc-devel x86_64 2.38.9000-26.fc40 fedora 100 k glibc-headers-x86 noarch 2.38.9000-26.fc40 fedora 585 k gnutls x86_64 3.8.2-2.fc40 fedora 1.1 M groff-base x86_64 1.23.0-3.fc40 fedora 1.1 M guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M hdf5 x86_64 1.12.1-15.fc40 fedora 2.2 M hwloc-libs x86_64 2.9.3-1.fc40 fedora 2.3 M json-c x86_64 0.17-1.fc40 fedora 43 k jsoncpp x86_64 1.9.5-5.fc39 fedora 99 k kernel-headers x86_64 6.7.0-0.rc3.git0.1.fc40 fedora 1.6 M libX11 x86_64 1.8.7-1.fc40 fedora 647 k libX11-common noarch 1.8.7-1.fc40 fedora 176 k libXau x86_64 1.0.11-4.fc40 fedora 31 k libaec x86_64 1.0.6-5.fc39 fedora 42 k libaec-devel x86_64 1.0.6-5.fc39 fedora 12 k libassuan x86_64 2.5.6-2.fc39 fedora 67 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libfabric x86_64 1.19.0-1.fc40 fedora 1.6 M libgcrypt x86_64 1.10.3-1.fc40 fedora 507 k libgfortran x86_64 13.2.1-5.fc40 fedora 906 k libgpg-error x86_64 1.47-2.fc39 fedora 230 k libibverbs x86_64 48.0-2.fc40 fedora 435 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libksba x86_64 1.6.5-1.fc40 fedora 159 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libnl3 x86_64 3.8.0-2.fc40 fedora 348 k libpsm2 x86_64 11.2.230-2.fc39 fedora 200 k libquadmath x86_64 13.2.1-5.fc40 fedora 197 k libquadmath-devel x86_64 13.2.1-5.fc40 fedora 39 k librdmacm x86_64 48.0-2.fc40 fedora 72 k libstdc++-devel x86_64 13.2.1-5.fc40 fedora 2.6 M libtool-ltdl x86_64 2.4.7-8.fc40 fedora 36 k libuv x86_64 1:1.47.0-3.fc40 fedora 250 k libxcb x86_64 1.16-2.fc40 fedora 238 k libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-filesystem x86_64 1.8.0-9.fc39 fedora 34 k lua-json noarch 1.3.4-4.fc39 fedora 30 k lua-lpeg x86_64 1.0.2-11.fc39 fedora 67 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k lua-term x86_64 0.07-18.fc39 fedora 15 k metis x86_64 5.1.0.3-2.fc39 fedora 572 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k mpi4py-common noarch 3.1.5-3.fc40 fedora 18 k mpich x86_64 4.1.2-7.fc40 fedora 2.1 M ncurses x86_64 6.4-8.20231001.fc40 fedora 418 k nettle x86_64 3.9.1-2.fc39 fedora 425 k npth x86_64 1.6-14.fc39 fedora 25 k numactl-libs x86_64 2.0.16-3.fc39 fedora 30 k openblas x86_64 0.3.25-1.fc40 fedora 38 k openblas-openmp x86_64 0.3.25-1.fc40 fedora 5.0 M openblas-openmp64 x86_64 0.3.25-1.fc40 fedora 4.9 M perl-AutoLoader noarch 5.74-503.fc40 fedora 21 k perl-B x86_64 1.88-503.fc40 fedora 177 k perl-Carp noarch 1.54-500.fc39 fedora 29 k perl-Class-Struct noarch 0.68-503.fc40 fedora 22 k perl-Data-Dumper x86_64 2.188-501.fc39 fedora 56 k perl-Digest noarch 1.20-500.fc39 fedora 25 k perl-Digest-MD5 x86_64 2.58-501.fc40 fedora 35 k perl-DynaLoader x86_64 1.54-503.fc40 fedora 26 k perl-Encode x86_64 4:3.20-501.fc40 fedora 1.7 M perl-Errno x86_64 1.37-503.fc40 fedora 15 k perl-Exporter noarch 5.77-500.fc39 fedora 31 k perl-Fcntl x86_64 1.15-503.fc40 fedora 21 k perl-File-Basename noarch 2.86-503.fc40 fedora 17 k perl-File-Path noarch 2.18-501.fc40 fedora 35 k perl-File-Temp noarch 1:0.231.100-501.fc40 fedora 59 k perl-File-stat noarch 1.13-503.fc40 fedora 17 k perl-FileHandle noarch 2.05-503.fc40 fedora 16 k perl-Getopt-Long noarch 1:2.57-1.fc40 fedora 63 k perl-Getopt-Std noarch 1.13-503.fc40 fedora 16 k perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k perl-IO x86_64 1.52-503.fc40 fedora 82 k perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k perl-IO-Socket-SSL noarch 2.084-1.fc40 fedora 225 k perl-IPC-Open3 noarch 1.22-503.fc40 fedora 22 k perl-MIME-Base64 x86_64 3.16-501.fc40 fedora 29 k perl-Mozilla-CA noarch 20230821-1.fc40 fedora 13 k perl-Net-SSLeay x86_64 1.92-10.fc39 fedora 360 k perl-POSIX x86_64 2.13-503.fc40 fedora 97 k perl-PathTools x86_64 3.89-500.fc39 fedora 87 k perl-Pod-Escapes noarch 1:1.07-501.fc40 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k perl-Scalar-List-Utils x86_64 5:1.63-500.fc39 fedora 72 k perl-SelectSaver noarch 1.02-503.fc40 fedora 12 k perl-Socket x86_64 4:2.037-3.fc39 fedora 55 k perl-Storable x86_64 1:3.32-500.fc39 fedora 99 k perl-Symbol noarch 1.09-503.fc40 fedora 14 k perl-Term-ANSIColor noarch 5.01-502.fc40 fedora 47 k perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k perl-URI noarch 5.21-1.fc40 fedora 125 k perl-base noarch 2.27-503.fc40 fedora 16 k perl-constant noarch 1.33-501.fc39 fedora 22 k perl-if noarch 0.61.000-503.fc40 fedora 14 k perl-interpreter x86_64 4:5.38.2-503.fc40 fedora 72 k perl-libnet noarch 3.15-501.fc39 fedora 129 k perl-libs x86_64 4:5.38.2-503.fc40 fedora 2.3 M perl-locale noarch 1.10-503.fc40 fedora 14 k perl-mro x86_64 1.28-503.fc40 fedora 29 k perl-overload noarch 1.37-503.fc40 fedora 46 k perl-overloading noarch 0.02-503.fc40 fedora 13 k perl-parent noarch 1:0.241-500.fc39 fedora 14 k perl-podlators noarch 1:5.01-500.fc39 fedora 125 k perl-vars noarch 1.05-503.fc40 fedora 13 k petsc x86_64 3.20.1-2.fc40 fedora 7.0 M procps-ng x86_64 4.0.4-1.fc40 fedora 377 k pyproject-rpm-macros noarch 1.10.0-1.fc40 fedora 41 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python-rpm-macros noarch 3.12-4.fc40 fedora 19 k python3 x86_64 3.12.0-2.fc40 fedora 26 k python3-fiat noarch 2019.1.0-17.fc39 fedora 218 k python3-libs x86_64 3.12.0-2.fc40 fedora 9.2 M python3-mpi4py-mpich x86_64 3.1.5-3.fc40 fedora 580 k python3-mpich x86_64 4.1.2-7.fc40 fedora 9.7 k python3-mpmath noarch 1.3.0-3.fc39 fedora 1.1 M python3-packaging noarch 23.2-2.fc40 fedora 125 k python3-rpm-generators noarch 14-8.fc40 fedora 30 k python3-rpm-macros noarch 3.12-4.fc40 fedora 14 k python3-sympy x86_64 1.12-3.fc40 fedora 14 M rhash x86_64 1.4.3-3.fc39 fedora 194 k scotch x86_64 7.0.4-2.fc40 fedora 279 k suitesparse64 x86_64 5.13.0-4.fc40 fedora 1.1 M sundials x86_64 6.6.2-3.fc40 fedora 1.1 M tcl x86_64 1:8.6.13-1.fc40 fedora 1.1 M tpm2-tss x86_64 4.0.1-6.fc40 fedora 395 k tzdata noarch 2023c-4.fc40 fedora 717 k vim-filesystem noarch 2:9.0.2120-1.fc40 fedora 18 k yaksa x86_64 0.2-3.fc37 fedora 6.5 M Transaction Summary ================================================================================ Install 205 Packages Total size: 226 M Total download size: 77 M Installed size: 971 M Downloading Packages: [SKIPPED] boost-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-atomic-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-chrono-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-container-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-context-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-contract-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-coroutine-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-date-time-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-devel-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-fiber-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-filesystem-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-graph-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-iostreams-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-json-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-locale-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-log-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-math-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-nowide-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-numpy3-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-program-options-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-python3-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-random-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-regex-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-serialization-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-stacktrace-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-system-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-test-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-thread-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-timer-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-type_erasure-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-wave-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] annobin-docs-12.32-1.fc40.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.32-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cmake-3.27.7-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cmake-data-3.27.7-1.fc40.noarch.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.27.7-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cmake-rpm-macros-3.27.7-1.fc40.noarch.rpm: Already downloaded [SKIPPED] cpp-13.2.1-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] emacs-filesystem-29.1-14.fc40.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.3.1-5.fc39.x86_64.rpm: Already downloaded 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rhash-1.4.3-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2023c-4.fc40.noarch.rpm: Already downloaded [SKIPPED] vim-filesystem-9.0.2120-1.fc40.noarch.rpm: Already downloaded [SKIPPED] zlib-devel-1.2.13-5.fc40.x86_64.rpm: Already downloaded (148/205): Lmod-8.7.32-1.fc40.x86_64.rpm 15 MB/s | 261 kB 00:00 (149/205): SuperLU-6.0.1-1.fc40.x86_64.rpm 8.7 MB/s | 186 kB 00:00 (150/205): chrpath-0.16-21.fc39.x86_64.rpm 14 MB/s | 30 kB 00:00 (151/205): eigen3-devel-3.4.0-12.fc39.noarch.rp 54 MB/s | 1.2 MB 00:00 (152/205): flexiblas-devel-3.3.1-5.fc39.x86_64. 19 MB/s | 117 kB 00:00 (153/205): SuperLUMT64-double-3.1.0-36.fc39.x86 1.5 MB/s | 82 kB 00:00 (154/205): flexiblas-openblas-openmp64-3.3.1-5. 5.3 MB/s | 17 kB 00:00 (155/205): flexiblas-netlib64-3.3.1-5.fc39.x86_ 58 MB/s | 3.0 MB 00:00 (156/205): SuperLUMT-common-3.1.0-36.fc39.noarc 6.0 MB/s | 642 kB 00:00 (157/205): hdf5-1.12.1-15.fc40.x86_64.rpm 114 MB/s | 2.2 MB 00:00 (158/205): gcc-gfortran-13.2.1-5.fc40.x86_64.rp 168 MB/s | 12 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Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libgfortran-13.2.1-5.fc40.x86_64 1/205 Installing : boost-system-1.83.0-0.fc40.x86_64 2/205 Installing : boost-chrono-1.83.0-0.fc40.x86_64 3/205 Installing : cmake-filesystem-3.27.7-1.fc40.x86_64 4/205 Installing : boost-thread-1.83.0-0.fc40.x86_64 5/205 Installing : libquadmath-13.2.1-5.fc40.x86_64 6/205 Installing : libicu-73.2-2.fc39.x86_64 7/205 Installing : libmpc-1.3.1-3.fc39.x86_64 8/205 Installing : libgpg-error-1.47-2.fc39.x86_64 9/205 Installing : boost-regex-1.83.0-0.fc40.x86_64 10/205 Installing : python-rpm-macros-3.12-4.fc40.noarch 11/205 Installing : libnl3-3.8.0-2.fc40.x86_64 12/205 Installing : boost-context-1.83.0-0.fc40.x86_64 13/205 Installing : boost-atomic-1.83.0-0.fc40.x86_64 14/205 Installing : boost-filesystem-1.83.0-0.fc40.x86_64 15/205 Installing : libibverbs-48.0-2.fc40.x86_64 16/205 Installing : python3-rpm-macros-3.12-4.fc40.noarch 17/205 Installing : openblas-0.3.25-1.fc40.x86_64 18/205 Installing : 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108/205 Installing : perl-AutoLoader-5.74-503.fc40.noarch 109/205 Installing : perl-URI-5.21-1.fc40.noarch 110/205 Installing : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 111/205 Installing : perl-Mozilla-CA-20230821-1.fc40.noarch 112/205 Installing : perl-if-0.61.000-503.fc40.noarch 113/205 Installing : perl-locale-1.10-503.fc40.noarch 114/205 Installing : perl-IO-Socket-IP-0.42-1.fc39.noarch 115/205 Installing : perl-Time-Local-2:1.350-3.fc39.noarch 116/205 Installing : perl-File-Path-2.18-501.fc40.noarch 117/205 Installing : perl-IO-Socket-SSL-2.084-1.fc40.noarch 118/205 Installing : perl-Net-SSLeay-1.92-10.fc39.x86_64 119/205 Installing : perl-Pod-Escapes-1:1.07-501.fc40.noarch 120/205 Installing : perl-Class-Struct-0.68-503.fc40.noarch 121/205 Installing : perl-Term-ANSIColor-5.01-502.fc40.noarch 122/205 Installing : perl-POSIX-2.13-503.fc40.x86_64 123/205 Installing : perl-IPC-Open3-1.22-503.fc40.noarch 124/205 Installing : perl-File-Temp-1:0.231.100-501.fc40.noarch 125/205 Installing : perl-HTTP-Tiny-0.088-3.fc39.noarch 126/205 Installing : perl-Term-Cap-1.18-500.fc39.noarch 127/205 Installing : perl-Pod-Simple-1:3.45-4.fc39.noarch 128/205 Installing : perl-Socket-4:2.037-3.fc39.x86_64 129/205 Installing : perl-SelectSaver-1.02-503.fc40.noarch 130/205 Installing : perl-Symbol-1.09-503.fc40.noarch 131/205 Installing : perl-File-stat-1.13-503.fc40.noarch 132/205 Installing : perl-podlators-1:5.01-500.fc39.noarch 133/205 Installing : perl-Pod-Perldoc-3.28.01-501.fc39.noarch 134/205 Installing : perl-Fcntl-1.15-503.fc40.x86_64 135/205 Installing : perl-Text-ParseWords-3.31-500.fc39.noarch 136/205 Installing : perl-base-2.27-503.fc40.noarch 137/205 Installing : perl-mro-1.28-503.fc40.x86_64 138/205 Installing : perl-IO-1.52-503.fc40.x86_64 139/205 Installing : perl-overloading-0.02-503.fc40.noarch 140/205 Installing : perl-Pod-Usage-4:2.03-500.fc39.noarch 141/205 Installing : perl-Errno-1.37-503.fc40.x86_64 142/205 Installing : perl-File-Basename-2.86-503.fc40.noarch 143/205 Installing : perl-Getopt-Std-1.13-503.fc40.noarch 144/205 Installing : perl-MIME-Base64-3.16-501.fc40.x86_64 145/205 Installing : perl-Scalar-List-Utils-5:1.63-500.fc39.x86_64 146/205 Installing : perl-constant-1.33-501.fc39.noarch 147/205 Installing : perl-Storable-1:3.32-500.fc39.x86_64 148/205 Installing : perl-overload-1.37-503.fc40.noarch 149/205 Installing : perl-parent-1:0.241-500.fc39.noarch 150/205 Installing : perl-vars-1.05-503.fc40.noarch 151/205 Installing : perl-Getopt-Long-1:2.57-1.fc40.noarch 152/205 Installing : perl-Carp-1.54-500.fc39.noarch 153/205 Installing : perl-Exporter-5.77-500.fc39.noarch 154/205 Installing : perl-PathTools-3.89-500.fc39.x86_64 155/205 Installing : perl-DynaLoader-1.54-503.fc40.x86_64 156/205 Installing : perl-Encode-4:3.20-501.fc40.x86_64 157/205 Installing : perl-libs-4:5.38.2-503.fc40.x86_64 158/205 Installing : perl-interpreter-4:5.38.2-503.fc40.x86_64 159/205 Installing : 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annobin-docs-12.32-1.fc40.noarch 177/205 Installing : SuperLUMT-common-3.1.0-36.fc39.noarch 178/205 Installing : SuperLUMT64-double-3.1.0-36.fc39.x86_64 179/205 Installing : sundials-6.6.2-3.fc40.x86_64 180/205 Installing : boost-test-1.83.0-0.fc40.x86_64 181/205 Installing : boost-stacktrace-1.83.0-0.fc40.x86_64 182/205 Installing : boost-serialization-1.83.0-0.fc40.x86_64 183/205 Installing : boost-random-1.83.0-0.fc40.x86_64 184/205 Installing : boost-program-options-1.83.0-0.fc40.x86_64 185/205 Installing : boost-nowide-1.83.0-0.fc40.x86_64 186/205 Installing : boost-math-1.83.0-0.fc40.x86_64 187/205 Installing : boost-iostreams-1.83.0-0.fc40.x86_64 188/205 Installing : boost-contract-1.83.0-0.fc40.x86_64 189/205 Installing : boost-1.83.0-0.fc40.x86_64 190/205 Installing : boost-devel-1.83.0-0.fc40.x86_64 191/205 Installing : sundials-devel-6.6.2-3.fc40.x86_64 192/205 Installing : annobin-plugin-gcc-12.32-1.fc40.x86_64 193/205 Running scriptlet: annobin-plugin-gcc-12.32-1.fc40.x86_64 193/205 Installing : pybind11-devel-2.11.1-1.fc39.x86_64 194/205 Installing : python3-ffc-2019.1.0.post0-17.fc39.noarch 195/205 Installing : hdf5-devel-1.12.1-15.fc40.x86_64 196/205 Installing : petsc-devel-3.20.1-2.fc40.x86_64 197/205 Installing : gcc-plugin-annobin-13.2.1-5.fc40.x86_64 198/205 Running scriptlet: gcc-plugin-annobin-13.2.1-5.fc40.x86_64 198/205 Installing : gnupg2-2.4.3-4.fc40.x86_64 199/205 Installing : python3-devel-3.12.0-2.fc40.x86_64 200/205 Installing : python3-setuptools-68.2.2-1.fc40.noarch 201/205 Installing : scotch-devel-7.0.4-2.fc40.x86_64 202/205 Installing : flexiblas-devel-3.3.1-5.fc39.x86_64 203/205 Installing : eigen3-devel-3.4.0-12.fc39.noarch 204/205 Installing : chrpath-0.16-21.fc39.x86_64 205/205 Running scriptlet: chrpath-0.16-21.fc39.x86_64 205/205 Installed: Lmod-8.7.32-1.fc40.x86_64 SuperLU-6.0.1-1.fc40.x86_64 SuperLUMT-common-3.1.0-36.fc39.noarch SuperLUMT64-double-3.1.0-36.fc39.x86_64 annobin-docs-12.32-1.fc40.noarch annobin-plugin-gcc-12.32-1.fc40.x86_64 boost-1.83.0-0.fc40.x86_64 boost-atomic-1.83.0-0.fc40.x86_64 boost-chrono-1.83.0-0.fc40.x86_64 boost-container-1.83.0-0.fc40.x86_64 boost-context-1.83.0-0.fc40.x86_64 boost-contract-1.83.0-0.fc40.x86_64 boost-coroutine-1.83.0-0.fc40.x86_64 boost-date-time-1.83.0-0.fc40.x86_64 boost-devel-1.83.0-0.fc40.x86_64 boost-fiber-1.83.0-0.fc40.x86_64 boost-filesystem-1.83.0-0.fc40.x86_64 boost-graph-1.83.0-0.fc40.x86_64 boost-iostreams-1.83.0-0.fc40.x86_64 boost-json-1.83.0-0.fc40.x86_64 boost-locale-1.83.0-0.fc40.x86_64 boost-log-1.83.0-0.fc40.x86_64 boost-math-1.83.0-0.fc40.x86_64 boost-nowide-1.83.0-0.fc40.x86_64 boost-numpy3-1.83.0-0.fc40.x86_64 boost-program-options-1.83.0-0.fc40.x86_64 boost-python3-1.83.0-0.fc40.x86_64 boost-random-1.83.0-0.fc40.x86_64 boost-regex-1.83.0-0.fc40.x86_64 boost-serialization-1.83.0-0.fc40.x86_64 boost-stacktrace-1.83.0-0.fc40.x86_64 boost-system-1.83.0-0.fc40.x86_64 boost-test-1.83.0-0.fc40.x86_64 boost-thread-1.83.0-0.fc40.x86_64 boost-timer-1.83.0-0.fc40.x86_64 boost-type_erasure-1.83.0-0.fc40.x86_64 boost-wave-1.83.0-0.fc40.x86_64 chrpath-0.16-21.fc39.x86_64 cmake-3.27.7-1.fc40.x86_64 cmake-data-3.27.7-1.fc40.noarch cmake-filesystem-3.27.7-1.fc40.x86_64 cmake-rpm-macros-3.27.7-1.fc40.noarch cpp-13.2.1-5.fc40.x86_64 eigen3-devel-3.4.0-12.fc39.noarch emacs-filesystem-1:29.1-14.fc40.noarch expat-2.5.0-3.fc39.x86_64 flexiblas-3.3.1-5.fc39.x86_64 flexiblas-devel-3.3.1-5.fc39.x86_64 flexiblas-netlib-3.3.1-5.fc39.x86_64 flexiblas-netlib64-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-5.fc40.x86_64 gcc-c++-13.2.1-5.fc40.x86_64 gcc-gfortran-13.2.1-5.fc40.x86_64 gcc-plugin-annobin-13.2.1-5.fc40.x86_64 glibc-devel-2.38.9000-26.fc40.x86_64 glibc-headers-x86-2.38.9000-26.fc40.noarch gnupg2-2.4.3-4.fc40.x86_64 gnutls-3.8.2-2.fc40.x86_64 groff-base-1.23.0-3.fc40.x86_64 guile22-2.2.7-9.fc39.x86_64 hdf5-1.12.1-15.fc40.x86_64 hdf5-devel-1.12.1-15.fc40.x86_64 hwloc-libs-2.9.3-1.fc40.x86_64 json-c-0.17-1.fc40.x86_64 jsoncpp-1.9.5-5.fc39.x86_64 kernel-headers-6.7.0-0.rc3.git0.1.fc40.x86_64 libX11-1.8.7-1.fc40.x86_64 libX11-common-1.8.7-1.fc40.noarch libXau-1.0.11-4.fc40.x86_64 libaec-1.0.6-5.fc39.x86_64 libaec-devel-1.0.6-5.fc39.x86_64 libassuan-2.5.6-2.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libfabric-1.19.0-1.fc40.x86_64 libgcrypt-1.10.3-1.fc40.x86_64 libgfortran-13.2.1-5.fc40.x86_64 libgpg-error-1.47-2.fc39.x86_64 libibverbs-48.0-2.fc40.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libksba-1.6.5-1.fc40.x86_64 libmpc-1.3.1-3.fc39.x86_64 libnl3-3.8.0-2.fc40.x86_64 libpsm2-11.2.230-2.fc39.x86_64 libquadmath-13.2.1-5.fc40.x86_64 libquadmath-devel-13.2.1-5.fc40.x86_64 librdmacm-48.0-2.fc40.x86_64 libstdc++-devel-13.2.1-5.fc40.x86_64 libtool-ltdl-2.4.7-8.fc40.x86_64 libuv-1:1.47.0-3.fc40.x86_64 libxcb-1.16-2.fc40.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-filesystem-1.8.0-9.fc39.x86_64 lua-json-1.3.4-4.fc39.noarch lua-lpeg-1.0.2-11.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 lua-term-0.07-18.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 metis-5.1.0.3-2.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 mpi4py-common-3.1.5-3.fc40.noarch mpich-4.1.2-7.fc40.x86_64 ncurses-6.4-8.20231001.fc40.x86_64 nettle-3.9.1-2.fc39.x86_64 npth-1.6-14.fc39.x86_64 numactl-libs-2.0.16-3.fc39.x86_64 openblas-0.3.25-1.fc40.x86_64 openblas-openmp-0.3.25-1.fc40.x86_64 openblas-openmp64-0.3.25-1.fc40.x86_64 perl-AutoLoader-5.74-503.fc40.noarch perl-B-1.88-503.fc40.x86_64 perl-Carp-1.54-500.fc39.noarch perl-Class-Struct-0.68-503.fc40.noarch perl-Data-Dumper-2.188-501.fc39.x86_64 perl-Digest-1.20-500.fc39.noarch perl-Digest-MD5-2.58-501.fc40.x86_64 perl-DynaLoader-1.54-503.fc40.x86_64 perl-Encode-4:3.20-501.fc40.x86_64 perl-Errno-1.37-503.fc40.x86_64 perl-Exporter-5.77-500.fc39.noarch perl-Fcntl-1.15-503.fc40.x86_64 perl-File-Basename-2.86-503.fc40.noarch perl-File-Path-2.18-501.fc40.noarch perl-File-Temp-1:0.231.100-501.fc40.noarch perl-File-stat-1.13-503.fc40.noarch perl-FileHandle-2.05-503.fc40.noarch perl-Getopt-Long-1:2.57-1.fc40.noarch perl-Getopt-Std-1.13-503.fc40.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-IO-1.52-503.fc40.x86_64 perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.084-1.fc40.noarch perl-IPC-Open3-1.22-503.fc40.noarch perl-MIME-Base64-3.16-501.fc40.x86_64 perl-Mozilla-CA-20230821-1.fc40.noarch perl-Net-SSLeay-1.92-10.fc39.x86_64 perl-POSIX-2.13-503.fc40.x86_64 perl-PathTools-3.89-500.fc39.x86_64 perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.x86_64 perl-SelectSaver-1.02-503.fc40.noarch perl-Socket-4:2.037-3.fc39.x86_64 perl-Storable-1:3.32-500.fc39.x86_64 perl-Symbol-1.09-503.fc40.noarch perl-Term-ANSIColor-5.01-502.fc40.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-base-2.27-503.fc40.noarch perl-constant-1.33-501.fc39.noarch perl-if-0.61.000-503.fc40.noarch perl-interpreter-4:5.38.2-503.fc40.x86_64 perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.2-503.fc40.x86_64 perl-locale-1.10-503.fc40.noarch perl-mro-1.28-503.fc40.x86_64 perl-overload-1.37-503.fc40.noarch perl-overloading-0.02-503.fc40.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-vars-1.05-503.fc40.noarch petsc-3.20.1-2.fc40.x86_64 petsc-devel-3.20.1-2.fc40.x86_64 procps-ng-4.0.4-1.fc40.x86_64 pybind11-devel-2.11.1-1.fc39.x86_64 pyproject-rpm-macros-1.10.0-1.fc40.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0-2.fc40.x86_64 python3-devel-3.12.0-2.fc40.x86_64 python3-dijitso-2019.1.0-15.fc39.noarch python3-ffc-2019.1.0.post0-17.fc39.noarch python3-fiat-2019.1.0-17.fc39.noarch python3-libs-3.12.0-2.fc40.x86_64 python3-mpi4py-mpich-3.1.5-3.fc40.x86_64 python3-mpich-4.1.2-7.fc40.x86_64 python3-mpmath-1.3.0-3.fc39.noarch python3-numpy-1:1.26.0-2.fc40.x86_64 python3-packaging-23.2-2.fc40.noarch python3-rpm-generators-14-8.fc40.noarch python3-rpm-macros-3.12-4.fc40.noarch python3-setuptools-68.2.2-1.fc40.noarch python3-sympy-1.12-3.fc40.x86_64 python3-ufl-2019.1.0-17.fc39.noarch rhash-1.4.3-3.fc39.x86_64 scotch-7.0.4-2.fc40.x86_64 scotch-devel-7.0.4-2.fc40.x86_64 suitesparse64-5.13.0-4.fc40.x86_64 sundials-6.6.2-3.fc40.x86_64 sundials-devel-6.6.2-3.fc40.x86_64 tcl-1:8.6.13-1.fc40.x86_64 tpm2-tss-4.0.1-6.fc40.x86_64 tzdata-2023c-4.fc40.noarch vim-filesystem-2:9.0.2120-1.fc40.noarch yaksa-0.2-3.fc37.x86_64 zlib-devel-1.2.13-5.fc40.x86_64 Complete! Finish: build setup for dolfin-2019.1.0.post0-47.fc40.src.rpm Start: rpmbuild dolfin-2019.1.0.post0-47.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1697414400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.kjai87 + umask 022 + cd /builddir/build/BUILD + /usr/lib/rpm/redhat/gpgverify --keyring=/builddir/build/SOURCES/3083BE4C722232E28AD0828CBED06106DD22BAB3.gpg --signature=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz.asc --data=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz gpgv: Signature made Fri Apr 26 07:47:43 2019 UTC gpgv: using RSA key 3083BE4C722232E28AD0828CBED06106DD22BAB3 gpgv: Good signature from "FEniCS Project Steering Council " + cd /builddir/build/BUILD + rm -rf dolfin-2019.1.0.post0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd dolfin-2019.1.0.post0 + rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-pkgconfig-drop-irrelevant-part-from-Libs-and-Cflags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Add-missing-include-for-compatiblity-with-gcc-13.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i -r 's|pybind11==|pybind11>=|' python/setup.py + rm cmake/modules/FindBLAS.cmake + cat + sed -r -i 's/#include \n\0/' dolfin/geometry/IntersectionConstruction.cpp dolfin/mesh/MeshFunction.h + sed -r -i 's|boost/detail/endian.hpp|boost/endian/arithmetic.hpp|' dolfin/io/VTKFile.cpp dolfin/io/VTKWriter.cpp + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.isVrUn + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + mkdir -p build + cd build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON .. -DBLA_VENDOR=FlexiBLAS -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=off -Wno-dev -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH) -- Found Boost: /usr/include (found version "1.83.0") found components: timer filesystem program_options iostreams regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12", minimum required is "3") -- Found UFC: /usr/lib/python3.12/site-packages/ffc/backends/ufc (Required is at least version "2019.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Found PETSc: TRUE (found suitable version "3.20.1", minimum required is "3.7") -- Checking for one of the modules 'crayslepc_real;SLEPc' -- SLEPc could not be found. Be sure to set SLEPC_DIR. (missing: SLEPC_FOUND) (Required is at least version "3.7") -- Checking for package 'AMD' -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib64/libflexiblas.so -- UMFPACK could not be found. Be sure to set UMFPACK_DIR. (missing: UMFPACK_INCLUDE_DIRS AMD_LIBRARIES UMFPACK_TEST_RUNS) -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- CHOLMOD could not be found. Be sure to set CHOLMOD_DIR. (missing: CHOLMOD_INCLUDE_DIRS CHOLMOD_TEST_RUNS) -- Found HDF5: /lib64/libhdf5.so (found version "1.12.1") found components: C -- Checking for Trilinos -- Unable to find Trilinos (>= 12.4.0) -- Trilinos could not be found -- Found ZLIB: /lib64/libz.so (found version "1.2.13") -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFIN_AUTO_DETECT_MPI, Detect MPI automatically (turn this off to use the MPI compiler wrappers directly via setting CXX, CXX, FC). * DOLFIN_WITH_LIBRARY_VERSION, Build with library version information. * DOLFIN_ENABLE_DOCS, Enable generation of documentation. * DOLFIN_ENABLE_MPI, Compile with support for MPI. * DOLFIN_ENABLE_PETSC, Compile with support for PETSc. * DOLFIN_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFIN_ENABLE_TRILINOS, Compile with support for Trilinos. * DOLFIN_ENABLE_UMFPACK, Compile with support for UMFPACK. * DOLFIN_ENABLE_CHOLMOD, Compile with support for CHOLMOD. * DOLFIN_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFIN_ENABLE_PARMETIS, Compile with support for ParMETIS. * DOLFIN_ENABLE_SUNDIALS, Compile with support for SUNDIALS. * DOLFIN_ENABLE_ZLIB, Compile with support for zlib. * DOLFIN_ENABLE_HDF5, Compile with support for HDF5. -- The following OPTIONAL packages have been found: * PETSc (required version >= 3.7), Portable, Extensible Toolkit for Scientific Computation, Enables the PETSc linear algebra backend * BLAS, Basic Linear Algebra Subprograms, * HDF5, Hierarchical Data Format 5 (HDF5), * ZLIB, Compression library, -- The following REQUIRED packages have been found: * Boost, Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PythonInterp (required version >= 3), Interactive high-level object-oriented language, * UFC (required version >= 2019.1), Unified language for form-compilers (part of FFC), * PkgConfig -- The following features have been disabled: * CMAKE_USE_RELATIVE_PATHS, Use relative paths in makefiles and projects. * DOLFIN_ENABLE_CODE_COVERAGE, Enable code coverage. * DOLFIN_ENABLE_BENCHMARKS, Enable benchmark programs. * DOLFIN_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * DOLFIN_DEPRECATION_ERROR, Turn deprecation warnings into errors. * DOLFIN_ENABLE_GEOMETRY_DEBUGGING, Enable geometry debugging. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- The following OPTIONAL packages have not been found: * MPI, Message Passing Interface (MPI) Enables DOLFIN to run in parallel with MPI * SLEPc (required version >= 3.7), Scalable Library for Eigenvalue Problem Computations, * UMFPACK, Sparse LU factorization library, * CHOLMOD, Sparse Cholesky factorization library for sparse matrices, -- -- Generating demo source files from reStructuredText -- -------------------------------------------------- /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/Biharmonic.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/built-in-meshes/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/HyperElasticity.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/MixedPoisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P1.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P3.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/Poisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/main.cpp -- -- Generating form files in demo, test and bench directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo, test and bench directories -- ------------------------------------------------------------------- -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done (17.9s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0/build + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson2D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/Poisson2D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson1D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/Poisson1D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson3D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/Poisson3D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin 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-grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/adaptivesolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 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/usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/adapt.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/GoalFunctional.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/marking.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:30: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from ‘void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from ‘void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o -MF CMakeFiles/dolfin.dir/ale/ALE.cpp.o.d -o CMakeFiles/dolfin.dir/ale/ALE.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/ALE.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/ErrorControl.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -DDOLFIN_GIT_COMMIT_HASH=\"unknown\" -DUFC_SIGNATURE=\"1e5e8d5476f82af05ab9c93365d99f971e0284d6\" -MD -MT dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o -MF CMakeFiles/dolfin.dir/common/defines.cpp.o.d -o CMakeFiles/dolfin.dir/common/defines.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/defines.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o -MF CMakeFiles/dolfin.dir/common/init.cpp.o.d -o CMakeFiles/dolfin.dir/common/init.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o -MF CMakeFiles/dolfin.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfin.dir/common/MPI.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/MPI.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -MF CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o.d -o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -MF CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o.d -o CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/MeshDisplacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o -MF CMakeFiles/dolfin.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfin.dir/common/Timer.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/Timer.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -MF CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o.d -o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/UniqueIdGenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o -MF CMakeFiles/dolfin.dir/common/timing.cpp.o.d -o CMakeFiles/dolfin.dir/common/timing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/timing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/Extrapolation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o -MF CMakeFiles/dolfin.dir/common/Variable.cpp.o.d -o CMakeFiles/dolfin.dir/common/Variable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o -MF CMakeFiles/dolfin.dir/common/utils.cpp.o.d -o CMakeFiles/dolfin.dir/common/utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/assemble.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/HarmonicSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/assemble_local.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -MF CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o.d -o CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/AssemblerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/Assembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/Assembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -MF CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DiscreteOperators.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o -MF CMakeFiles/dolfin.dir/fem/Equation.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Equation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/Equation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -MF CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o.d -o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/FiniteElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -MF CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o.d -o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/fem_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp: In static member function ‘static void dolfin::DofMapBuilder::compute_node_reordering(dolfin::IndexMap&, std::vector&, const std::unordered_map >&, const std::vector&, const std::vector >&, const std::vector&, const std::set&, MPI_Comm)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp:1663:13: warning: unused variable ‘it’ [-Wunused-variable] 1663 | for (auto it : old_to_new_local) | ^~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearTimeDependentProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp: In member function ‘void dolfin::LinearVariationalProblem::check_forms() const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 114 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: note: use reference type to prevent copying 114 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o -MF CMakeFiles/dolfin.dir/fem/Form.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Form.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/Form.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LocalAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshForm.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp: In member function ‘void dolfin::NonlinearVariationalProblem::check_forms() const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 156 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: note: use reference type to prevent copying 156 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LocalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -MF CMakeFiles/dolfin.dir/fem/PointSource.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PointSource.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o -MF CMakeFiles/dolfin.dir/fem/solve.cpp.o.d -o CMakeFiles/dolfin.dir/fem/solve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/SparsityPatternBuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -MF CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp: In static member function ‘static std::shared_ptr dolfin::PETScDMCollection::create_transfer_matrix(const dolfin::FunctionSpace&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp:545:15: warning: unused variable ‘mend’ [-Wunused-variable] 545 | std::size_t mend = finemap->ownership_range().second; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/CoefficientAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o -MF CMakeFiles/dolfin.dir/fem/UFC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/UFC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/UFC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/SystemAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o -MF CMakeFiles/dolfin.dir/function/assign.cpp.o.d -o CMakeFiles/dolfin.dir/function/assign.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/assign.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o -MF CMakeFiles/dolfin.dir/function/Constant.cpp.o.d -o CMakeFiles/dolfin.dir/function/Constant.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/Constant.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o -MF CMakeFiles/dolfin.dir/function/Expression.cpp.o.d -o CMakeFiles/dolfin.dir/function/Expression.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/Expression.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/FunctionAXPY.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/FunctionAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o -MF CMakeFiles/dolfin.dir/function/Function.cpp.o.d -o CMakeFiles/dolfin.dir/function/Function.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/Function.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/GenericFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/FunctionSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/MultiMeshCoefficientAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -MF CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o.d -o CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/LagrangeInterpolator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/MultiMeshFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/MultiMeshSubSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/MultiMeshFunctionSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/SpecialFacetFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/IntervalMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -MF CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o.d -o CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/SpecialFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/BoxMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/RectangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/SphericalShellMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/UnitTetrahedronMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/UnitDiscMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/UnitTriangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/BoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -MF CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp: In static member function ‘static std::vector > dolfin::ConvexTriangulation::_triangulate_1d(const std::vector&, std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp:238:10: warning: variable ‘collinear’ set but not used [-Wunused-but-set-variable] 238 | bool collinear = true; | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/CollisionPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function ‘static void dolfin::GeometryDebugging::print(const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 42 | for (const Point p : simplex) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: note: use reference type to prevent copying 42 | for (const Point p : simplex) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function ‘static void dolfin::GeometryDebugging::print(const std::vector&, const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 52 | for (const Point p : simplex_0) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: note: use reference type to prevent copying 52 | for (const Point p : simplex_0) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 57 | for (const Point p : simplex_1) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: note: use reference type to prevent copying 57 | for (const Point p : simplex_1) | ^ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -MF CMakeFiles/dolfin.dir/geometry/intersect.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/intersect.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o -MF CMakeFiles/dolfin.dir/geometry/Point.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/Point.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -MF CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/MeshPointIntersection.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -MF CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/IntersectionConstruction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GenericBoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/predicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/predicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -MF CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/BoostGraphOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -MF CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/ParMETIS.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -MF CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o.d -o CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/SCOTCH.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o -MF CMakeFiles/dolfin.dir/io/base64.cpp.o.d -o CMakeFiles/dolfin.dir/io/base64.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/base64.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -MF CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/ZoltanInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp: In static member function ‘static int32_t dolfin::GraphBuilder::compute_nonlocal_dual_graph(MPI_Comm, const boost::multi_array&, const dolfin::CellType&, int64_t, std::vector >&, FacetCellMap&, std::set&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp:364:21: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 364 | const std::int8_t num_vertices_per_cell = cell_type.num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -MF CMakeFiles/dolfin.dir/io/GenericFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/GenericFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o -MF CMakeFiles/dolfin.dir/io/File.cpp.o.d -o CMakeFiles/dolfin.dir/io/File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp: In member function ‘void dolfin::File::init(MPI_Comm, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp:150:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp:21: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp:157:63: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | boost::filesystem::extension(boost::filesystem::basename(path)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp:157:35: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 157 | boost::filesystem::extension(boost::filesystem::basename(path)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:28: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:119:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instamake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' ntiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:151:14: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static hid_t dolfin::HDF5Interface::open_file(MPI_Comm, std::string, std::string, bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:96:10: warning: unused variable ‘status’ [-Wunused-variable] 96 | herr_t status = H5Pclose(plist_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::close_file(hid_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:104:10: warning: unused variable ‘status’ [-Wunused-variable] 104 | herr_t status = H5Fclose(hdf5_file_handle); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::flush_file(hid_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:110:10: warning: unused variable ‘status’ [-Wunused-variable] 110 | herr_t status = H5Fflush(hdf5_file_handle, H5F_SCOPE_GLOBAL); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static const std::string dolfin::HDF5Interface::get_attribute_type(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:135:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 135 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::delete_attribute(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:196:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 196 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static const std::vector > dolfin::HDF5Interface::list_attributes(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:234:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 234 | herr_t status = H5Aiterate2(dset_id, H5_INDEX_NAME, H5_ITER_INC, &n, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_attribute(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:250:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 250 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:272:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 272 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_dataset(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:303:10: warning: unused variable ‘status’ [-Wunused-variable] 303 | herr_t status = H5Pclose(lapl_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::add_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:336:14: warning: unused variable ‘status’ [-Wunused-variable] 336 | herr_t status = H5Gclose(group_id_vis); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static int dolfin::HDF5Interface::dataset_rank(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:359:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 359 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static std::vector dolfin::HDF5Interface::get_dataset_shape(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:387:13: warning: unused variable ‘ndims’ [-Wunused-variable] 387 | const int ndims = H5Sget_simple_extent_dims(space, size.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:391:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 391 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static int dolfin::HDF5Interface::num_datasets_in_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:405:10: warning: unused variable ‘status’ [-Wunused-variable] 405 | herr_t status = H5Gget_info_by_name(hdf5_file_handle, group_name.c_str(), | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static std::vector > dolfin::HDF5Interface::dataset_list(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:418:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 418 | herr_t status; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -MF CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/SimplexQuadrature.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o -MF CMakeFiles/dolfin.dir/io/pugixml.cpp.o.d -o CMakeFiles/dolfin.dir/io/pugixml.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/pugixml.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -MF CMakeFiles/dolfin.dir/io/RAWFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/RAWFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -MF CMakeFiles/dolfin.dir/io/SVGFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/SVGFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/VTKFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/VTKWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5File.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:50: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::write(const dolfin::Mesh&, std::size_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:446:24: warning: unused variable ‘num_cells’ [-Wunused-variable] 446 | const std::int64_t num_cells | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::write(const dolfin::Function&, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:918:30: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 918 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:23: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::read(dolfin::Function&, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1067:21: warning: unused variable ‘num_global_dofs’ [-Wunused-variable] 1067 | const std::size_t num_global_dofs = vector_shape[0]; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:172:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:257:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:465:33: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1046:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1058:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1640:33: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1820:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:450:15: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:925:13: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:929:13: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from ‘void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from ‘void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from ‘void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from ‘void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function ‘static void dolfin::XMLFunctionData::build_global_to_cell_dof(std::vector > >&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:212:23: warning: unused variable ‘D’ [-Wunused-variable] 212 | const std::size_t D = mesh.topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function ‘static void dolfin::XMLFunctionData::build_dof_map(std::vector >&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:291:23: warning: unused variable ‘D’ [-Wunused-variable] 291 | const std::size_t D = mesh.topology().dim(); | ^ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DOM.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp: In static member function ‘static void dolfin::X3DOM::add_menu_color_tab(pugi::xml_node&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp:933:18: warning: variable ‘br_node’ set but not used [-Wunused-but-set-variable] 933 | pugi::xml_node br_node = xml_node.append_child("br"); | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLTable.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -MF CMakeFiles/dolfin.dir/io/xmlutils.cpp.o.d -o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/xmlutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLVector.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/Amesos2LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/BelosKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp: In member function ‘void dolfin::XMLFile::load_xml_doc(pugi::xml_document&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:403:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 403 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:26: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp: In member function ‘void dolfin::XMLFile::save_xml_doc(const pugi::xml_document&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:467:63: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 467 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XYZFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XYZFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/BlockMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/CoordinateMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/BlockVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/DefaultFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:51: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::write_checkpoint(const dolfin::Function&, std::string, double, Encoding, bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:152:28: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 152 | pugi::xml_parse_result result = _xml_doc->load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:184:20: warning: variable ‘domain_node’ set but not used [-Wunused-but-set-variable] 184 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::write(const dolfin::Function&, double, Encoding)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:417:20: warning: variable ‘domain_node’ set but not used [-Wunused-but-set-variable] 417 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function ‘static void dolfin::XDMFFile::add_function(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Function&, std::string, const dolfin::Mesh&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1268:30: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 1268 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:20: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::read(dolfin::Mesh&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1326:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 1326 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::read_checkpoint(dolfin::Function&, std::string, int64_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1445:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 1445 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function ‘static void dolfin::XDMFFile::build_mesh_quadratic(dolfin::Mesh&, const dolfin::CellType&, int64_t, int64_t, int, int, const pugi::xml_node&, const pugi::xml_node&, const boost::filesystem::path&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1566:13: warning: unused variable ‘num_edges_per_cell’ [-Wunused-variable] 1566 | const int num_edges_per_cell = cell_type.num_entities(1); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:778:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 806 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:792:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = double; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:797:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1119:21: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1127:21: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' ugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = double; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1137:21: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:391:16: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1293:16: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long unsigned int; MPI_Comm = int]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1509:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = int; MPI_Comm = int]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1526:36: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = double; MPI_Comm = int]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1541:26: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long int; MPI_Comm = int]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1729:55: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1827:16: required from ‘static void dolfin::XDMFFile::add_topology_data(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Mesh&, int) [with T = long int; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1159:36: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/GenericLinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/Ifpack2Preconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/GenericMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -MF CMakeFiles/dolfin.dir/la/IndexMap.cpp.o.d -o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/IndexMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/LinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/KrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/LinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/MueluPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScLinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScObject.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp: In member function ‘void dolfin::PETScKrylovSolver::monitor(bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:500:77: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 500 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:6, from /usr/include/petsc/petscts.h:7, from /usr/include/petsc/petsc.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:29: /usr/include/petsc/petscksp.h:484:96: note: declared here 484 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScOptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SLEPcEigenSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o -MF CMakeFiles/dolfin.dir/la/solve.cpp.o.d -o CMakeFiles/dolfin.dir/la/solve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -MF CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o.d -o CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TensorLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TpetraFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TpetraMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TpetraVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -MF CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o.d -o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TrilinosParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o -MF CMakeFiles/dolfin.dir/log/Event.cpp.o.d -o CMakeFiles/dolfin.dir/log/Event.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function ‘void dolfin::SparsityPattern::insert_full_rows_local(const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:261:21: warning: unused variable ‘ghosted_size0’ [-Wunused-variable] 261 | const std::size_t ghosted_size0 = | ^~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function ‘void dolfin::SparsityPattern::apply()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:384:21: warning: unused variable ‘proc_number’ [-Wunused-variable] 384 | const std::size_t proc_number = _mpi_comm.rank(); | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -MF CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o.d -o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/test_nullspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -MF CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o.d -o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/VectorSpaceBasis.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o -MF CMakeFiles/dolfin.dir/log/LogManager.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/LogManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o -MF CMakeFiles/dolfin.dir/log/log.cpp.o.d -o CMakeFiles/dolfin.dir/log/log.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/log.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o -MF CMakeFiles/dolfin.dir/log/LogStream.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogStream.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/LogStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o -MF CMakeFiles/dolfin.dir/math/basic.cpp.o.d -o CMakeFiles/dolfin.dir/math/basic.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/basic.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o -MF CMakeFiles/dolfin.dir/log/Progress.cpp.o.d -o CMakeFiles/dolfin.dir/log/Progress.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Progress.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -MF CMakeFiles/dolfin.dir/math/Lagrange.cpp.o.d -o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/Lagrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o -MF CMakeFiles/dolfin.dir/log/Logger.cpp.o.d -o CMakeFiles/dolfin.dir/log/Logger.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o -MF CMakeFiles/dolfin.dir/math/Legendre.cpp.o.d -o CMakeFiles/dolfin.dir/math/Legendre.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/Legendre.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/legendre.hpp:16, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/Legendre.cpp:24: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o -MF CMakeFiles/dolfin.dir/log/Table.cpp.o.d -o CMakeFiles/dolfin.dir/log/Table.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Cell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Cell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -MF CMakeFiles/dolfin.dir/mesh/CellType.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/CellType.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/DynamicMeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Edge.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Edge.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Face.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Face.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Face.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/FacetCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Facet.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Facet.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/HexahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/IntervalCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshConnectivity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/DistributedMeshTools.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/LocalMeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshDomains.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshEntity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshGeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshQuality.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function ‘static dolfin::Mesh dolfin::MeshRenumbering::renumber_by_color(const dolfin::Mesh&, std::vector)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:149:42: warning: variable ‘insert’ set but not used [-Wunused-but-set-variable] 149 | std::pair insert | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function ‘static void dolfin::MeshRenumbering::compute_renumbering(const dolfin::Mesh&, const std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:167:21: warning: unused variable ‘num_cells’ [-Wunused-variable] 167 | const std::size_t num_cells = mesh.num_cells(); | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:204:35: warning: unused variable ‘colors_old’ [-Wunused-variable] 204 | const std::vector& colors_old = mesh_coloring->second.first; | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshHierarchy.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshTopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/PointCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp: In static member function ‘static int32_t dolfin::MeshPartitioning::distribute_cells(MPI_Comm, const dolfin::LocalMeshData&, const std::vector&, const std::map >&, boost::multi_array&, std::vector&, std::vector&, std::map >&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp:727:21: warning: unused variable ‘num_local_cells’ [-Wunused-variable] 727 | const std::size_t num_local_cells = mesh_data.topology.cell_vertices.size(); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/PeriodicBoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/QuadrilateralCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/SubDomain.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function ‘void dolfin::MultiMesh::_build_quadrature_rules_overlap(std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: warning: loop variable ‘cutting’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: note: use reference type to prevent copying 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function ‘void dolfin::MultiMesh::_build_quadrature_rules_interface(std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: warning: loop variable ‘cut_i’ creates a copy from type ‘const std::pair > >’ [-Wrange-loop-construct] 931 | for (const auto cut_i: cmap) | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: note: use reference type to prevent copying 931 | for (const auto cut_i: cmap) | ^~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: warning: loop variable ‘boundary_cell_index_j’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: note: use reference type to prevent copying 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/TetrahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/SubMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/TriangleCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -MF CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp: In member function ‘void dolfin::MultiStageScheme::_check_arguments()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 228 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: note: use reference type to prevent copying 228 | for (const auto bc: _bcs) | ^~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 260 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: note: use reference type to prevent copying 260 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/RKSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/PointIntegralSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/NewtonSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/TopologyComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp: In member function ‘void dolfin::PETScSNESSolver::set_linear_solver_parameters()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:520:79: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 520 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:35: /usr/include/petsc/petscksp.h:484:96: note: declared here 484 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -MF CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/parameter/GlobalParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In constructor ‘dolfin::PETScTAOSolver::PETScTAOSolver(MPI_Comm, std::string, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:99:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 99 | ierr = TaoSetHessianRoutine(_tao, _matH.mat(), _matP.mat(), nullptr, nullptr); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsc.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:34, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:31: /usr/include/petsc/petsctao.h:360:87: note: declared here 360 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function ‘void dolfin::PETScTAOSolver::init(dolfin::OptimisationProblem&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:226:29: warning: ‘PetscErrorCode TaoSetInitialVector(Tao, Vec)’ is deprecated: Use "TaoSetSolution()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 226 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:327:88: note: declared here 327 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetSolution()", ) static inline PetscErrorCode TaoSetInitialVector(Tao t, Vec v) | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:237:43: warning: ‘PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)’ is deprecated: Use "TaoSetObjectiveAndGradient()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 237 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, FormFunctionGradient, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:356:100: note: declared here 356 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetObjectiveAndGradient()", ) static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t, PetscErrorCode (*f)(Tao, Vec, PetscReal *, Vec, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:239:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 239 | ierr = TaoSetHessianRoutine(_tao, nullptr, nullptr, FormHessian, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:360:87: note: declared here 360 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In static member function ‘static PetscErrorCode dolfin::PETScTAOSolver::FormHessian(Tao, Vec, Mat, Mat, void*)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:391:47: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 391 | PetscErrorCode ierr = TaoSetHessianRoutine(tao, nullptr, H, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 392 | nullptr, nullptr); | ~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:360:87: note: declared here 360 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function ‘void dolfin::PETScTAOSolver::set_ksp_options()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:580:77: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 580 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31: /usr/include/petsc/petscksp.h:484:96: note: declared here 484 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function ‘std::size_t dolfin::TAOLinearBoundSolver::solve(const dolfin::PETScMatrix&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:175:29: warning: ‘PetscErrorCode TaoSetInitialVector(Tao, Vec)’ is deprecated: Use "TaoSetSolution()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 175 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsc.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:29: /usr/include/petsc/petsctao.h:327:88: note: declared here 327 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetSolution()", ) static inline PetscErrorCode TaoSetInitialVector(Tao t, Vec v) | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:184:43: warning: ‘PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)’ is deprecated: Use "TaoSetObjectiveAndGradient()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 184 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 185 | __TAOFormFunctionGradientQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:356:100: note: declared here 356 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetObjectiveAndGradient()", ) static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t, PetscErrorCode (*f)(Tao, Vec, PetscReal *, Vec, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:188:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 188 | ierr = TaoSetHessianRoutine(_tao, A->mat(), A->mat(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | __TAOFormHessianQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:360:87: note: declared here 360 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function ‘void dolfin::TAOLinearBoundSolver::set_ksp_options()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:416:86: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 416 | ierr = KSPMonitorSet(ksp, (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:6, from /usr/include/petsc/petscts.h:7, from /usr/include/petsc/petsc.h:31: /usr/include/petsc/petscksp.h:484:96: note: declared here 484 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In static member function ‘static PetscErrorCode dolfin::TAOLinearBoundSolver::__TAOMonitor(Tao, void*)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:54: warning: unknown conversion type character ‘\x09’ in format [-Wformat=] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:59: warning: format ‘%g’ expects argument of type ‘double’, but argument 3 has type ‘PetscInt’ {aka ‘int’} [-Wformat=] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ~^ ~~~ | | | | | PetscInt {aka int} | double | %d /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:41: warning: too many arguments for format [-Wformat-extra-args] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -MF CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/BisectionRefinement1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -MF CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/LocalMeshCoarsening.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ 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CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o -MF CMakeFiles/dolfin.dir/refinement/refine.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/refine.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/refine.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -MF CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/parameter/Parameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o -MF CMakeFiles/dolfin.dir/ts/CVode.cpp.o.d -o CMakeFiles/dolfin.dir/ts/CVode.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ts/CVode.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/ParallelRefinement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -MF CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/PlazaRefinementND.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp: In static member function ‘static void dolfin::RegularCutRefinement::refine_marked(dolfin::Mesh&, const dolfin::Mesh&, const std::vector&, const dolfin::IndexSet&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp:323:19: warning: unused variable ‘twin_marker’ [-Wunused-variable] 323 | const int twin_marker = refinement_markers[bisection_twin]; | ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Linking CXX shared library libdolfin.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfin.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libdolfin.so.2019.1 -o libdolfin.so.2019.1.0 CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o 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CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o CMakeFiles/dolfin.dir/fem/Equation.cpp.o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfin.dir/fem/Form.cpp.o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o CMakeFiles/dolfin.dir/fem/solve.cpp.o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o CMakeFiles/dolfin.dir/fem/UFC.cpp.o CMakeFiles/dolfin.dir/function/assign.cpp.o CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o CMakeFiles/dolfin.dir/function/Constant.cpp.o CMakeFiles/dolfin.dir/function/Expression.cpp.o CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o CMakeFiles/dolfin.dir/function/Function.cpp.o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o CMakeFiles/dolfin.dir/geometry/intersect.cpp.o CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o CMakeFiles/dolfin.dir/geometry/Point.cpp.o CMakeFiles/dolfin.dir/geometry/predicates.cpp.o CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o CMakeFiles/dolfin.dir/io/base64.cpp.o CMakeFiles/dolfin.dir/io/File.cpp.o CMakeFiles/dolfin.dir/io/GenericFile.cpp.o CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o CMakeFiles/dolfin.dir/io/HDF5File.cpp.o CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o CMakeFiles/dolfin.dir/io/pugixml.cpp.o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o CMakeFiles/dolfin.dir/io/SVGFile.cpp.o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o CMakeFiles/dolfin.dir/io/X3DFile.cpp.o CMakeFiles/dolfin.dir/io/X3DOM.cpp.o CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o CMakeFiles/dolfin.dir/io/XMLTable.cpp.o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o CMakeFiles/dolfin.dir/la/solve.cpp.o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o CMakeFiles/dolfin.dir/log/Event.cpp.o CMakeFiles/dolfin.dir/log/log.cpp.o CMakeFiles/dolfin.dir/log/Logger.cpp.o CMakeFiles/dolfin.dir/log/LogManager.cpp.o CMakeFiles/dolfin.dir/log/LogStream.cpp.o CMakeFiles/dolfin.dir/log/Progress.cpp.o CMakeFiles/dolfin.dir/log/Table.cpp.o CMakeFiles/dolfin.dir/math/basic.cpp.o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o CMakeFiles/dolfin.dir/math/Legendre.cpp.o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o CMakeFiles/dolfin.dir/mesh/Face.cpp.o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o CMakeFiles/dolfin.dir/refinement/refine.cpp.o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o CMakeFiles/dolfin.dir/ts/CVode.cpp.o /usr/lib64/libboost_timer.so /usr/lib64/libboost_filesystem.so /usr/lib64/libboost_program_options.so /usr/lib64/libboost_iostreams.so /lib64/libhdf5.so /lib64/libz.so /usr/lib64/libboost_regex.so /usr/lib64/libpetsc.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_symlink_library libdolfin.so.2019.1.0 libdolfin.so.2019.1 libdolfin.so make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 0 ++ python3 -c 'import ffc; print(ffc.get_include_path())' + ffc_path=/usr/lib/python3.12/site-packages/ffc/backends/ufc ++ pkgconf --cflags eigen3 + eigen_options=-I/usr/include/eigen3 + sed -r -i 's|Cflags:.*|\0 -I/usr/lib/python3.12/site-packages/ffc/backends/ufc -I/usr/include/eigen3|' dolfin.pc + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/CMakeFiles/dolfin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-convert -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-order -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-plot -- Installing: 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/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/Facet.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/HexahedronCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/IntervalCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/LocalMeshData.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/LocalMeshValueCollection.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshColoring.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshConnectivity.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshData.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshDomains.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshEditor.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshEntity.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshEntityIteratorBase.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshEntityIterator.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshFunction.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshGeometry.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/Mesh.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshHierarchy.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshOrdering.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshPartitioning.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshQuality.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshRelation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshRenumbering.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshSmoothing.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshTopology.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshTransformation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MeshValueCollection.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/MultiMesh.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/PeriodicBoundaryComputation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/PointCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/QuadrilateralCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/SubDomain.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/SubMesh.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/SubsetIterator.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/TetrahedronCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/mesh/Vertex.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/multistage/dolfin_multistage.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/multistage/MultiStageScheme.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/multistage/PointIntegralSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/multistage/RKSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/parameter/Parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/parameter/Parameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/refine.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/ts/CVode.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/libdolfin.so.2019.1.0 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/libdolfin.so.2019.1 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/libdolfin.so -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/dolfin copying dolfin/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin creating build/lib.linux-x86_64-cpython-312/dolfin/common copying dolfin/common/timer.py -> build/lib.linux-x86_64-cpython-312/dolfin/common copying dolfin/common/plotting.py -> build/lib.linux-x86_64-cpython-312/dolfin/common copying dolfin/common/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/common creating build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/specialfunctions.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/multimeshfunctionspace.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/multimeshfunction.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/jit.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/functionspace.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/function.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/expression.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/constant.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/argument.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/function creating build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/solving.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/solvers.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/projection.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/problem.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/norms.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/multimeshdirichletbc.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/interpolation.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/formmanipulations.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/form.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/errorcontrolgenerator.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/dirichletbc.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/assembling.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/adaptivesolving.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem creating build/lib.linux-x86_64-cpython-312/dolfin/la copying dolfin/la/solver.py -> build/lib.linux-x86_64-cpython-312/dolfin/la copying dolfin/la/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/la creating build/lib.linux-x86_64-cpython-312/dolfin/io copying dolfin/io/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/io creating build/lib.linux-x86_64-cpython-312/dolfin/jit copying dolfin/jit/pybind11jit.py -> build/lib.linux-x86_64-cpython-312/dolfin/jit copying dolfin/jit/jit.py -> build/lib.linux-x86_64-cpython-312/dolfin/jit copying dolfin/jit/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/jit creating build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/ufl_util.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/svgtools.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/subdomain.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/meshvaluecollection.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/meshfunction.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/ale.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh creating build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/rushlarsenschemes.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/multistagesolvers.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/multistagescheme.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/factorize.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage creating build/lib.linux-x86_64-cpython-312/dolfin/parameter copying dolfin/parameter/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/parameter creating build/lib.linux-x86_64-cpython-312/dolfin_utils creating build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/xml_writer.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/meshconvert.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/abaqus.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert creating build/lib.linux-x86_64-cpython-312/dolfin_utils/test copying dolfin_utils/test/skips.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/test copying dolfin_utils/test/paths.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/test copying dolfin_utils/test/fixtures.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/test copying dolfin_utils/test/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/test creating build/lib.linux-x86_64-cpython-312/fenics copying fenics/__init__.py -> build/lib.linux-x86_64-cpython-312/fenics running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:188 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:21 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12", minimum required is "3.6") -- Found PythonLibs: /usr/lib64/libpython3.12.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.11.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Checking for package 'PETSc4Py' -- PETSc4py could not be found. Be sure to set PYTHONPATH appropriately. (missing: PETSC4PY_INCLUDE_DIRS PETSC4PY_VERSION) Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'mpi4py' jfa: mpi4py not found -- Could NOT find MPI4PY (missing: MPI4PY_INCLUDE_DIR) -- Configuring done (1.0s) -- Generating done (0.0s) -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 Change Dir: '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j3 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0/python -B/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' [ 4%] Building CXX object CMakeFiles/cpp.dir/src/dolfin.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/dolfin.cpp.o -MF CMakeFiles/cpp.dir/src/dolfin.cpp.o.d -o CMakeFiles/cpp.dir/src/dolfin.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/dolfin.cpp [ 9%] Building CXX object CMakeFiles/cpp.dir/src/parameter.cpp.o [ 14%] Building CXX object CMakeFiles/cpp.dir/src/adaptivity.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/parameter.cpp.o -MF CMakeFiles/cpp.dir/src/parameter.cpp.o.d -o CMakeFiles/cpp.dir/src/parameter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/parameter.cpp /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 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CMakeFiles/cpp.dir/src/adaptivity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/adaptivity.cpp [ 19%] Building CXX object CMakeFiles/cpp.dir/src/ale.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/ale.cpp.o -MF CMakeFiles/cpp.dir/src/ale.cpp.o.d -o CMakeFiles/cpp.dir/src/ale.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/ale.cpp [ 23%] Building CXX object CMakeFiles/cpp.dir/src/common.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/mesh.cpp.o -MF CMakeFiles/cpp.dir/src/mesh.cpp.o.d -o CMakeFiles/cpp.dir/src/mesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp [ 66%] Building CXX object CMakeFiles/cpp.dir/src/multistage.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/multistage.cpp.o -MF CMakeFiles/cpp.dir/src/multistage.cpp.o.d -o CMakeFiles/cpp.dir/src/multistage.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/multistage.cpp [ 71%] Building CXX object CMakeFiles/cpp.dir/src/ts.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/ts.cpp.o -MF CMakeFiles/cpp.dir/src/ts.cpp.o.d -o CMakeFiles/cpp.dir/src/ts.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/ts.cpp [ 76%] Building CXX object CMakeFiles/cpp.dir/src/io.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/io.cpp.o -MF CMakeFiles/cpp.dir/src/io.cpp.o.d -o CMakeFiles/cpp.dir/src/io.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/io.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:27: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = bool; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1613:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:429:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1613:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:430:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = double; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1613:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:431:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = long unsigned int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1613:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:432:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] [ 80%] Building CXX object CMakeFiles/cpp.dir/src/la.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/la.cpp.o -MF CMakeFiles/cpp.dir/src/la.cpp.o.d -o CMakeFiles/cpp.dir/src/la.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/la.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/io.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ [ 85%] Building CXX object CMakeFiles/cpp.dir/src/nls.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/nls.cpp.o -MF CMakeFiles/cpp.dir/src/nls.cpp.o.d -o CMakeFiles/cpp.dir/src/nls.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/nls.cpp [ 90%] Building CXX object CMakeFiles/cpp.dir/src/refinement.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/refinement.cpp.o -MF CMakeFiles/cpp.dir/src/refinement.cpp.o.d -o CMakeFiles/cpp.dir/src/refinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/refinement.cpp [ 95%] Building CXX object CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -MF CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o.d -o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/MPICommWrapper.cpp [100%] Linking CXX shared library /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-312/dolfin/cpp.cpython-312-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,cpp.cpython-312-x86_64-linux-gnu.so -o /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-312/dolfin/cpp.cpython-312-x86_64-linux-gnu.so CMakeFiles/cpp.dir/src/dolfin.cpp.o CMakeFiles/cpp.dir/src/parameter.cpp.o CMakeFiles/cpp.dir/src/adaptivity.cpp.o CMakeFiles/cpp.dir/src/ale.cpp.o CMakeFiles/cpp.dir/src/common.cpp.o CMakeFiles/cpp.dir/src/fem.cpp.o CMakeFiles/cpp.dir/src/function.cpp.o CMakeFiles/cpp.dir/src/generation.cpp.o CMakeFiles/cpp.dir/src/geometry.cpp.o CMakeFiles/cpp.dir/src/graph.cpp.o CMakeFiles/cpp.dir/src/log.cpp.o CMakeFiles/cpp.dir/src/math.cpp.o CMakeFiles/cpp.dir/src/mesh.cpp.o CMakeFiles/cpp.dir/src/multistage.cpp.o CMakeFiles/cpp.dir/src/ts.cpp.o CMakeFiles/cpp.dir/src/io.cpp.o CMakeFiles/cpp.dir/src/la.cpp.o CMakeFiles/cpp.dir/src/nls.cpp.o CMakeFiles/cpp.dir/src/refinement.cpp.o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -Wl,-rpath,/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64 /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/libdolfin.so.2019.1.0 /usr/lib64/libboost_timer.so /lib64/libhdf5.so /usr/lib64/libpetsc.so /usr/bin/strip /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-312/dolfin/cpp.cpython-312-x86_64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' [100%] Built target cpp gmake[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.tPSFUo + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + cd build + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/CMakeFiles/dolfin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-convert -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-order -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-plot -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/dolfin.conf -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-version -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/fenics-version -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-get-demos -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.py -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/time-series -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/time-series/cpp -- Installing: 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/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp/Poisson.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/submesh -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/submesh/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/submesh/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/submesh/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/refinement -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/refinement/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/refinement/cpp/CMakeLists.txt -- 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/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/Poisson.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/Poisson.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson-disc -- Installing: 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/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/parameter/Parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/parameter/Parameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/include/dolfin/refinement/ParallelRefinement.h -- 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/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64 --prefix /usr running install /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12 creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/fenics copying build/lib.linux-x86_64-cpython-312/fenics/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/fenics creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-312/dolfin_utils/test/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-312/dolfin_utils/test/fixtures.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-312/dolfin_utils/test/paths.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-312/dolfin_utils/test/skips.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert/abaqus.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert/meshconvert.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert/xml_writer.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin copying build/lib.linux-x86_64-cpython-312/dolfin/cpp.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/parameter copying build/lib.linux-x86_64-cpython-312/dolfin/parameter/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/parameter creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/factorize.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/multistagescheme.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/multistagesolvers.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/rushlarsenschemes.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/ale.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/meshfunction.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/meshvaluecollection.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/subdomain.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/svgtools.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/ufl_util.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-312/dolfin/jit/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-312/dolfin/jit/jit.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-312/dolfin/jit/pybind11jit.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/io copying build/lib.linux-x86_64-cpython-312/dolfin/io/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/io creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la copying build/lib.linux-x86_64-cpython-312/dolfin/la/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la copying build/lib.linux-x86_64-cpython-312/dolfin/la/solver.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/adaptivesolving.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/assembling.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/dirichletbc.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/errorcontrolgenerator.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/form.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/formmanipulations.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/interpolation.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/multimeshdirichletbc.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/norms.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/problem.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/projection.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/solvers.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/solving.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/argument.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/constant.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/expression.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/function.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/functionspace.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/jit.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/multimeshfunction.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/multimeshfunctionspace.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/specialfunctions.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-312/dolfin/common/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-312/dolfin/common/plotting.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-312/dolfin/common/timer.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-312/dolfin/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/fenics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test/fixtures.py to fixtures.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test/paths.py to paths.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test/skips.py to skips.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/abaqus.py to abaqus.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py to meshconvert.cpython-312.pyc /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/xml_writer.py to xml_writer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/parameter/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/factorize.py to factorize.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/multistagescheme.py to multistagescheme.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/multistagesolvers.py to multistagesolvers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/rushlarsenschemes.py to rushlarsenschemes.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/ale.py to ale.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/meshfunction.py to meshfunction.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/meshvaluecollection.py to meshvaluecollection.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/subdomain.py to subdomain.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/svgtools.py to svgtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/ufl_util.py to ufl_util.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit/jit.py to jit.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit/pybind11jit.py to pybind11jit.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/io/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la/solver.py to solver.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/adaptivesolving.py to adaptivesolving.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/assembling.py to assembling.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/dirichletbc.py to dirichletbc.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/errorcontrolgenerator.py to errorcontrolgenerator.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/form.py to form.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/formmanipulations.py to formmanipulations.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/interpolation.py to interpolation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/multimeshdirichletbc.py to multimeshdirichletbc.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/norms.py to norms.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/problem.py to problem.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/projection.py to projection.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/solvers.py to solvers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/solving.py to solving.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/argument.py to argument.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/constant.py to constant.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/expression.py to expression.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/function.py to function.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/functionspace.py to functionspace.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/jit.py to jit.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/multimeshfunction.py to multimeshfunction.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/multimeshfunctionspace.py to multimeshfunctionspace.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/specialfunctions.py to specialfunctions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common/timer.py to timer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/__init__.py to __init__.cpython-312.pyc writing byte-compilation script '/tmp/tmp85uhqu9s.py' /usr/bin/python3 /tmp/tmp85uhqu9s.py /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' removing /tmp/tmp85uhqu9s.py running install_egg_info running egg_info creating fenics_dolfin.egg-info writing fenics_dolfin.egg-info/PKG-INFO writing dependency_links to fenics_dolfin.egg-info/dependency_links.txt writing requirements to fenics_dolfin.egg-info/requires.txt writing top-level names to fenics_dolfin.egg-info/top_level.txt writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfin.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' Copying fenics_dolfin.egg-info to /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/fenics_dolfin-2019.1.0-py3.12.egg-info running install_scripts + rm -rfv /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/__pycache__ + sed -r -i '1 {s|#!/usr/bin/env python.*|#!/usr/bin/python3|}' /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-order /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-plot /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/bin/dolfin-convert + rm /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/dolfin/dolfin.conf + chrpath /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/cpp.cpython-312-x86_64-linux-gnu.so /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/cpp.cpython-312-x86_64-linux-gnu.so: RUNPATH=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64 + chrpath --delete /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/cpp.cpython-312-x86_64-linux-gnu.so + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2019.1.0.post0-47.fc40 --unique-debug-suffix -2019.1.0.post0-47.fc40.x86_64 --unique-debug-src-base dolfin-2019.1.0.post0-47.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/dolfin-2019.1.0.post0 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/dolfin-2019.1.0.post0-47.fc40.x86_64 9132 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/cpp.cpython-312-x86_64-linux-gnu.so Found '/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64' in installed files; aborting + : + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/dolfin-get-demos from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/fenics-version from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/dolfin-version from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/lib64/python3.12 using python3.12 /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Gukf7r + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + ctest -V -j4 UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0/DartConfiguration.tcl Test project /builddir/build/BUILD/dolfin-2019.1.0.post0 Constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! + RPM_EC=0 ++ jobs -p + exit 0 Processing files: dolfin-2019.1.0.post0-47.fc40.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.7kcPVl + umask 022 + cd /builddir/build/BUILD + cd dolfin-2019.1.0.post0 + DOCDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/doc/dolfin + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/doc/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0/README.rst /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/doc/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.rwy0AL + umask 022 + cd /builddir/build/BUILD + cd dolfin-2019.1.0.post0 + LICENSEDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/licenses/dolfin + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0/COPYING /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0/COPYING.LESSER /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0/AUTHORS /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64/usr/share/licenses/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Provides: dolfin = 2019.1.0.post0-47.fc40 dolfin(x86-64) = 2019.1.0.post0-47.fc40 libdolfin.so.2019.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash libboost_filesystem.so.1.83.0()(64bit) libboost_iostreams.so.1.83.0()(64bit) libboost_program_options.so.1.83.0()(64bit) libboost_timer.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libpetsc.so.3.20()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: dolfin-devel-2019.1.0.post0-47.fc40.x86_64 Provides: dolfin-devel = 2019.1.0.post0-47.fc40 dolfin-devel(x86-64) = 2019.1.0.post0-47.fc40 pkgconfig(dolfin) = 2019.1.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libdolfin.so.2019.1()(64bit) Processing files: python3-dolfin-2019.1.0.post0-47.fc40.x86_64 Provides: python-dolfin = 2019.1.0.post0-47.fc40 python3-dolfin = 2019.1.0.post0-47.fc40 python3-dolfin(x86-64) = 2019.1.0.post0-47.fc40 python3.12-dolfin = 2019.1.0.post0-47.fc40 python3.12dist(fenics-dolfin) = 2019.1 python3dist(fenics-dolfin) = 2019.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(fenics-dijitso) < 2019.2~~ with python3.12dist(fenics-dijitso) >= 2019.1) (python3.12dist(fenics-ffc) < 2019.2~~ with python3.12dist(fenics-ffc) >= 2019.1) (python3.12dist(fenics-ufl) < 2019.2~~ with python3.12dist(fenics-ufl) >= 2019.1) /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdolfin.so.2019.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 python3.12dist(numpy) python3.12dist(pkgconfig) python3.12dist(pybind11) >= 2.2.4 rtld(GNU_HASH) Obsoletes: python-dolfin < 2019.1.0.post0-47.fc40 Processing files: dolfin-doc-2019.1.0.post0-47.fc40.noarch Provides: dolfin-doc = 2019.1.0.post0-47.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash Processing files: dolfin-debugsource-2019.1.0.post0-47.fc40.x86_64 Provides: dolfin-debugsource = 2019.1.0.post0-47.fc40 dolfin-debugsource(x86-64) = 2019.1.0.post0-47.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: dolfin-debuginfo-2019.1.0.post0-47.fc40.x86_64 Provides: debuginfo(build-id) = b65d0ef243b6f84e9a0e253a4597c349ab9d7d47 dolfin-debuginfo = 2019.1.0.post0-47.fc40 dolfin-debuginfo(x86-64) = 2019.1.0.post0-47.fc40 libdolfin.so.2019.1.0-2019.1.0.post0-47.fc40.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: dolfin-debugsource(x86-64) = 2019.1.0.post0-47.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64 Wrote: /builddir/build/RPMS/dolfin-2019.1.0.post0-47.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debugsource-2019.1.0.post0-47.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-doc-2019.1.0.post0-47.fc40.noarch.rpm Wrote: /builddir/build/RPMS/dolfin-devel-2019.1.0.post0-47.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-dolfin-2019.1.0.post0-47.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debuginfo-2019.1.0.post0-47.fc40.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.M3p2bZ + umask 022 + cd /builddir/build/BUILD + cd dolfin-2019.1.0.post0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-47.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.mHhour + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-SPECPARTS + rm -rf dolfin-2019.1.0.post0 dolfin-2019.1.0.post0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild dolfin-2019.1.0.post0-47.fc40.src.rpm Finish: build phase for dolfin-2019.1.0.post0-47.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1701706770.381639/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1701706770.381639/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1701706770.381639/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-47.fc40.src.rpm) Config(child) 6 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "47.fc40", "arch": "x86_64" }, { "name": "dolfin-doc", "epoch": null, "version": "2019.1.0.post0", "release": "47.fc40", "arch": "noarch" }, { "name": "python3-dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "47.fc40", "arch": "x86_64" }, { "name": "dolfin-debuginfo", "epoch": null, "version": "2019.1.0.post0", "release": "47.fc40", "arch": "x86_64" }, { "name": "dolfin-debugsource", "epoch": null, "version": "2019.1.0.post0", "release": "47.fc40", "arch": "x86_64" }, { "name": "dolfin-devel", "epoch": null, "version": "2019.1.0.post0", "release": "47.fc40", "arch": "x86_64" }, { "name": "dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "47.fc40", "arch": "src" } ] } RPMResults finished