Warning: Permanently added '3.209.82.199' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6725257-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.70 PID: 10452 Logging PID: 10453 Task: {'appstream': False, 'background': True, 'build_id': 6725257, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'e5d08c2eeae053234ee2182aed9d6a77e5bd819f', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.72-2', 'project_dirname': 'boost-1.83', 'project_name': 'boost-1.83', 'project_owner': 'ppalka', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ppalka/boost-1.83/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'ppalka/boost-1.83--ppalka', 'source_json': {}, 'source_type': None, 'submitter': 'ppalka', 'tags': [], 'task_id': '6725257-fedora-rawhide-x86_64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn'... Running: git checkout e5d08c2eeae053234ee2182aed9d6a77e5bd819f -- cmd: ['git', 'checkout', 'e5d08c2eeae053234ee2182aed9d6a77e5bd819f', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn rc: 0 stdout: stderr: Note: switching to 'e5d08c2eeae053234ee2182aed9d6a77e5bd819f'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at e5d08c2 automatic import of smoldyn Running: copr-distgit-client sources Dload Upload Total Spent Left Speed 100 96.4M 100 96.4M 0 0 53.7M 0 0:00:01 0:00:01 --:--:-- 53.7M /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Reading stdout from command: md5sum Smoldyn-2.72.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1701749674.331883 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1701749674.331883 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn/smoldyn.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.2 INFO: Mock Version: 5.2 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1701749674.331883/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1701749674.331883/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/6b84d969583eab0c41f489d3b55e82f78ada08ef1320e9fb113e0d98a3d2c934/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/6b84d969583eab0c41f489d3b55e82f78ada08ef1320e9fb113e0d98a3d2c934/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 94 MB/s | 5.6 MB 00:00 fedora 3.1 MB/s | 72 MB 00:23 Last metadata expiration check: 0:00:01 ago on Tue Dec 5 04:14:59 2023. Package python3-dnf-4.18.1-2.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.3-1.fc40 fedora 317 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k python3-dateutil noarch 1:2.8.2-11.fc40 fedora 356 k python3-dbus x86_64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd x86_64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.2 M Installed size: 3.6 M Downloading Packages: (1/7): python3-dateutil-2.8.2-11.fc40.noarch.rp 20 MB/s | 356 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm 8.0 MB/s | 157 kB 00:00 (3/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm 7.0 MB/s | 155 kB 00:00 (4/7): python3-distro-1.8.0-6.fc39.noarch.rpm 10 MB/s | 49 kB 00:00 (5/7): python3-six-1.16.0-12.fc39.noarch.rpm 28 MB/s | 41 kB 00:00 (6/7): python3-systemd-235-5.fc39.x86_64.rpm 24 MB/s | 107 kB 00:00 (7/7): python3-dnf-plugins-core-4.4.3-1.fc40.no 35 MB/s | 317 kB 00:00 -------------------------------------------------------------------------------- Total 15 MB/s | 1.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.x86_64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 5/7 Installing : python3-dbus-1.3.2-4.fc39.x86_64 6/7 Installing : python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.3-1.fc40.noarch 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.x86_64 python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1701749674.331883/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 73 kB/s | 1.5 kB 00:00 Copr repository 113 MB/s | 5.6 MB 00:00 fedora 337 kB/s | 24 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.21-2.fc40 fedora 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.4-1.fc40 fedora 1.1 M cpio x86_64 2.14-5.fc40 fedora 280 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 40-0.20 fedora 20 k findutils x86_64 1:4.9.0-6.fc40 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38.9000-26.fc40 fedora 85 k grep x86_64 3.11-5.fc40 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.1-1.fc40 fedora 184 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 271-1.fc40 fedora 81 k rpm-build x86_64 4.19.0-3.fc40 fedora 79 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc40 fedora 1.3 M tar x86_64 2:1.35-2.fc40 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.2-1.fc40 fedora 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.5-1.fc40 fedora 557 k Installing dependencies: alternatives x86_64 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs x86_64 3.1.2-5.fc40 fedora 117 k authselect x86_64 1.4.3-1.fc40 fedora 149 k authselect-libs x86_64 1.4.3-1.fc40 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.41-15.fc40 fedora 6.3 M binutils-gold x86_64 2.41-15.fc40 fedora 797 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 fedora 863 k coreutils-common x86_64 9.4-1.fc40 fedora 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231113-1.gitb402e82.fc40 fedora 99 k curl x86_64 8.4.0-1.fc40 fedora 362 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-11.fc40 fedora 77 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.190-4.fc40 fedora 550 k elfutils-debuginfod-client x86_64 0.190-4.fc40 fedora 38 k elfutils-default-yama-scope noarch 0.190-4.fc40 fedora 13 k elfutils-libelf x86_64 0.190-4.fc40 fedora 194 k elfutils-libs x86_64 0.190-4.fc40 fedora 259 k fedora-gpg-keys noarch 40-0.2 fedora 130 k fedora-release noarch 40-0.20 fedora 9.3 k fedora-release-identity-basic noarch 40-0.20 fedora 10 k fedora-repos noarch 40-0.2 fedora 9.3 k fedora-repos-rawhide noarch 40-0.2 fedora 8.9 k file x86_64 5.45-1.fc40 fedora 49 k file-libs x86_64 5.45-1.fc40 fedora 763 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 13.2-12.fc40 fedora 4.2 M gdbm x86_64 1:1.23-4.fc39 fedora 155 k gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-3.fc40 fedora 8.1 k glibc x86_64 2.38.9000-26.fc40 fedora 2.2 M glibc-common x86_64 2.38.9000-26.fc40 fedora 367 k glibc-gconv-extra x86_64 2.38.9000-26.fc40 fedora 1.7 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.3.1-1.fc40 fedora 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k krb5-libs x86_64 1.21.2-2.fc40 fedora 765 k libacl x86_64 2.3.1-11.fc40 fedora 24 k libarchive x86_64 3.7.2-1.fc40 fedora 408 k libattr x86_64 2.5.1-9.fc40 fedora 18 k libblkid x86_64 2.39.2-1.fc40 fedora 116 k libbrotli x86_64 1.1.0-1.fc40 fedora 336 k libcap x86_64 2.69-1.fc40 fedora 83 k libcap-ng x86_64 0.8.3-8.fc40 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.4.0-1.fc40 fedora 343 k libeconf x86_64 0.5.2-1.fc40 fedora 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.2-1.fc40 fedora 162 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-5.fc40 fedora 112 k libgomp x86_64 13.2.1-5.fc40 fedora 321 k libidn2 x86_64 2.3.4-3.fc39 fedora 117 k libmount x86_64 2.39.2-1.fc40 fedora 154 k libnghttp2 x86_64 1.58.0-1.fc40 fedora 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.6-0.rc2.1.fc40 fedora 88 k libsemanage x86_64 3.6-0.rc2.1.fc40 fedora 116 k libsepol x86_64 3.6-0.rc2.1.fc40 fedora 340 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.2-1.fc40 fedora 67 k libssh x86_64 0.10.5-2.fc39 fedora 211 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ x86_64 13.2.1-5.fc40 fedora 864 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-0.fc40 fedora 94 k libunistring x86_64 1.1-5.fc40 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.2-1.fc40 fedora 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.12.1-1.fc40 fedora 699 k libzstd x86_64 1.5.5-4.fc39 fedora 309 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.1-1.fc40 fedora 343 k ncurses-base noarch 6.4-8.20231001.fc40 fedora 88 k ncurses-libs x86_64 6.4-8.20231001.fc40 fedora 338 k ocaml-srpm-macros noarch 9-1.fc40 fedora 9.0 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.4-1.fc40 fedora 2.2 M p11-kit x86_64 0.25.3-1.fc40 fedora 522 k p11-kit-trust x86_64 0.25.3-1.fc40 fedora 142 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-8.fc40 fedora 547 k pam-libs x86_64 1.5.3-8.fc40 fedora 57 k pcre2 x86_64 10.42-2.fc40 fedora 233 k pcre2-syntax noarch 10.42-2.fc40 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.10.0-1.fc40 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.11-1.fc40 fedora 8.3 k qt6-srpm-macros noarch 6.6.1-1.fc40 fedora 8.6 k readline x86_64 8.2-4.fc39 fedora 213 k rpm x86_64 4.19.0-3.fc40 fedora 537 k rpm-build-libs x86_64 4.19.0-3.fc40 fedora 96 k rpm-libs x86_64 4.19.0-3.fc40 fedora 313 k rpm-sequoia x86_64 1.5.0-2.fc40 fedora 879 k rust-srpm-macros noarch 25.2-2.fc40 fedora 13 k setup noarch 2.14.5-1.fc40 fedora 155 k sqlite-libs x86_64 3.44.1-1.fc40 fedora 693 k systemd-libs x86_64 255~rc4-3.fc40 fedora 702 k util-linux-core x86_64 2.39.2-1.fc40 fedora 493 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.5-1.fc40 fedora 108 k zip x86_64 3.0-39.fc40 fedora 266 k zlib x86_64 1.2.13-5.fc40 fedora 94 k zstd x86_64 1.5.5-4.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 52 M Installed size: 180 M Downloading Packages: [SKIPPED] alternatives-1.25-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.3-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.3-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.21-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.41-15.fc40.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.41-15.fc40.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.4-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.4-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.14-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20231113-1.gitb402e82.fc40.noarch.rpm: Already downloaded [SKIPPED] curl-8.4.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-11.fc40.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.10-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.190-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.190-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.190-4.fc40.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.190-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.190-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-40-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-release-40-0.20.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-40-0.20.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-40-0.20.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-40-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-40-0.2.noarch.rpm: Already downloaded [SKIPPED] file-5.45-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.45-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] forge-srpm-macros-0.1.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-8.fc39.noarch.rpm: Already downloaded [SKIPPED] gawk-5.2.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-13.2-12.fc40.x86_64.rpm: Already downloaded [SKIPPED] gdbm-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-3.fc40.noarch.rpm: Already downloaded [SKIPPED] glibc-2.38.9000-26.fc40.x86_64.rpm: Already downloaded [SKIPPED] 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/usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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Installing : gawk-5.2.2-2.fc39.x86_64 102/152 Installing : libverto-0.3.2-6.fc39.x86_64 103/152 Installing : xxhash-libs-0.8.2-1.fc39.x86_64 104/152 Installing : libssh-config-0.10.5-2.fc39.noarch 105/152 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 106/152 Installing : gnat-srpm-macros-6-3.fc39.noarch 107/152 Installing : ghc-srpm-macros-1.6.1-3.fc40.noarch 108/152 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 109/152 Installing : coreutils-common-9.4-1.fc40.x86_64 110/152 Installing : openssl-libs-1:3.1.4-1.fc40.x86_64 111/152 Installing : coreutils-9.4-1.fc40.x86_64 112/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152 Installing : krb5-libs-1.21.2-2.fc40.x86_64 114/152 Installing : libtirpc-1.3.4-0.fc40.x86_64 115/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : authselect-libs-1.4.3-1.fc40.x86_64 116/152 Installing : gzip-1.12-6.fc39.x86_64 117/152 Installing : cracklib-2.9.11-2.fc39.x86_64 118/152 Installing : libpwquality-1.4.5-6.fc39.x86_64 119/152 Installing : authselect-1.4.3-1.fc40.x86_64 120/152 Installing : libnsl2-2.0.0-6.fc39.x86_64 121/152 Installing : pam-1.5.3-8.fc40.x86_64 122/152 Installing : libssh-0.10.5-2.fc39.x86_64 123/152 Installing : libarchive-3.7.2-1.fc40.x86_64 124/152 Installing : libevent-2.1.12-9.fc39.x86_64 125/152 Installing : openldap-2.6.6-1.fc39.x86_64 126/152 Installing : libcurl-8.4.0-1.fc40.x86_64 127/152 Installing : elfutils-libs-0.190-4.fc40.x86_64 128/152 Installing : elfutils-debuginfod-client-0.190-4.fc40.x86_64 129/152 Installing : binutils-gold-2.41-15.fc40.x86_64 130/152 Running scriptlet: binutils-gold-2.41-15.fc40.x86_64 130/152 Installing : binutils-2.41-15.fc40.x86_64 131/152 Running scriptlet: binutils-2.41-15.fc40.x86_64 131/152 Installing : elfutils-0.190-4.fc40.x86_64 132/152 Installing : gdb-minimal-13.2-12.fc40.x86_64 133/152 Installing : debugedit-5.0-11.fc40.x86_64 134/152 Installing : curl-8.4.0-1.fc40.x86_64 135/152 Installing : rpm-sequoia-1.5.0-2.fc40.x86_64 136/152 Installing : rpm-libs-4.19.0-3.fc40.x86_64 137/152 Running scriptlet: rpm-4.19.0-3.fc40.x86_64 138/152 Installing : rpm-4.19.0-3.fc40.x86_64 138/152 Installing : efi-srpm-macros-5-9.fc39.noarch 139/152 Installing : lua-srpm-macros-1-9.fc39.noarch 140/152 Installing : rpm-build-libs-4.19.0-3.fc40.x86_64 141/152 Installing : ansible-srpm-macros-1-11.fc39.noarch 142/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/152 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 144/152 Installing : go-srpm-macros-3.3.1-1.fc40.noarch 145/152 Installing : python-srpm-macros-3.12-4.fc40.noarch 146/152 Installing : redhat-rpm-config-271-1.fc40.noarch 147/152 Installing : rpm-build-4.19.0-3.fc40.x86_64 148/152 Installing : pyproject-srpm-macros-1.10.0-1.fc40.noarch 149/152 Installing : util-linux-2.39.2-1.fc40.x86_64 150/152 Installing : which-2.21-40.fc39.x86_64 151/152 Installing : info-7.1-1.fc40.x86_64 152/152 Running scriptlet: filesystem-3.18-6.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.4.3-1.fc40.x86_64 152/152 Running scriptlet: rpm-4.19.0-3.fc40.x86_64 152/152 Running scriptlet: info-7.1-1.fc40.x86_64 152/152 Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-15.fc40.x86_64 binutils-gold-2.41-15.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc40.noarch curl-8.4.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-11.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.x86_64 elfutils-debuginfod-client-0.190-4.fc40.x86_64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.x86_64 elfutils-libs-0.190-4.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc40.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-12.fc40.x86_64 gdbm-1:1.23-4.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-26.fc40.x86_64 glibc-common-2.38.9000-26.fc40.x86_64 glibc-gconv-extra-2.38.9000-26.fc40.x86_64 glibc-minimal-langpack-2.38.9000-26.fc40.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-11.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.4.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-5.fc40.x86_64 libgomp-13.2.1-5.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-0.rc2.1.fc40.x86_64 libsemanage-3.6-0.rc2.1.fc40.x86_64 libsepol-3.6-0.rc2.1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-5.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.1-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-8.fc40.x86_64 pam-libs-1.5.3-8.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.1-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.0-3.fc40.x86_64 rpm-build-4.19.0-3.fc40.x86_64 rpm-build-libs-4.19.0-3.fc40.x86_64 rpm-libs-4.19.0-3.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.5-1.fc40.noarch shadow-utils-2:4.14.0-2.fc40.x86_64 sqlite-libs-3.44.1-1.fc40.x86_64 systemd-libs-255~rc4-3.fc40.x86_64 tar-2:1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-15.fc40.x86_64 binutils-gold-2.41-15.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc40.noarch curl-8.4.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-11.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.x86_64 elfutils-debuginfod-client-0.190-4.fc40.x86_64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.x86_64 elfutils-libs-0.190-4.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc40.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-12.fc40.x86_64 gdbm-1.23-4.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-26.fc40.x86_64 glibc-common-2.38.9000-26.fc40.x86_64 glibc-gconv-extra-2.38.9000-26.fc40.x86_64 glibc-minimal-langpack-2.38.9000-26.fc40.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-11.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.4.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-5.fc40.x86_64 libgomp-13.2.1-5.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-0.rc2.1.fc40.x86_64 libsemanage-3.6-0.rc2.1.fc40.x86_64 libsepol-3.6-0.rc2.1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-5.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.12.1-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-8.fc40.x86_64 pam-libs-1.5.3-8.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.10.0-1.fc40.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.1-1.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-271-1.fc40.noarch rpm-4.19.0-3.fc40.x86_64 rpm-build-4.19.0-3.fc40.x86_64 rpm-build-libs-4.19.0-3.fc40.x86_64 rpm-libs-4.19.0-3.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.x86_64 sqlite-libs-3.44.1-1.fc40.x86_64 systemd-libs-255~rc4-3.fc40.x86_64 tar-1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zip-3.0-39.fc40.x86_64 zlib-1.2.13-5.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1692316800 Wrote: /builddir/build/SRPMS/smoldyn-2.72-2.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1701749674.331883/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1701749674.331883/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1701749674.331883/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-os4frpp6/smoldyn/smoldyn.spec) Config(child) 0 minutes 54 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.72-2.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1701749674.331883/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1701749674.331883/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1701749674.331883/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-3.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 python3-dnf-4.18.1-2.fc40.noarch python3-dnf-plugins-core-4.4.3-1.fc40.noarch yum-4.18.1-2.fc40.noarch Start: build phase for smoldyn-2.72-2.fc40.src.rpm Start: build setup for smoldyn-2.72-2.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1692316800 Wrote: /builddir/build/SRPMS/smoldyn-2.72-2.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 95 kB/s | 1.5 kB 00:00 Copr repository 126 MB/s | 5.6 MB 00:00 fedora 189 kB/s | 24 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: boost-devel x86_64 1.83.0-0.fc40 copr_base 12 M cmake x86_64 3.27.7-1.fc40 fedora 8.0 M freeglut-devel x86_64 3.4.0-4.fc39 fedora 945 k gcc x86_64 13.2.1-5.fc40 fedora 34 M gcc-c++ x86_64 13.2.1-5.fc40 fedora 13 M libXi-devel x86_64 1.8.1-3.fc40 fedora 116 k libXmu-devel x86_64 1.1.4-4.fc40 fedora 27 k libglvnd-devel x86_64 1:1.7.0-1.fc40 fedora 162 k libtiff-devel x86_64 4.5.0-3.fc40 fedora 251 k make x86_64 1:4.4.1-2.fc39 fedora 589 k perl-macros noarch 4:5.38.2-503.fc40 fedora 13 k pybind11-devel x86_64 2.11.1-1.fc39 fedora 176 k python3-devel x86_64 3.12.0-2.fc40 fedora 311 k python3-flaky noarch 3.7.0-12.fc39 fedora 45 k python3-matplotlib x86_64 3.8.1-1.fc40 fedora 4.4 M python3-setuptools noarch 68.2.2-1.fc40 fedora 1.5 M python3-wheel noarch 1:0.41.2-1.fc40 fedora 163 k xorg-x11-server-Xvfb x86_64 1.20.14-27.fc40 fedora 895 k zlib-devel x86_64 1.2.13-5.fc40 fedora 45 k Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k annobin-docs noarch 12.32-1.fc40 fedora 92 k annobin-plugin-gcc x86_64 12.32-1.fc40 fedora 959 k boost x86_64 1.83.0-0.fc40 copr_base 14 k boost-atomic x86_64 1.83.0-0.fc40 copr_base 20 k boost-chrono x86_64 1.83.0-0.fc40 copr_base 26 k boost-container x86_64 1.83.0-0.fc40 copr_base 40 k boost-context x86_64 1.83.0-0.fc40 copr_base 17 k boost-contract x86_64 1.83.0-0.fc40 copr_base 46 k boost-coroutine x86_64 1.83.0-0.fc40 copr_base 20 k boost-date-time x86_64 1.83.0-0.fc40 copr_base 16 k boost-fiber x86_64 1.83.0-0.fc40 copr_base 42 k boost-filesystem x86_64 1.83.0-0.fc40 copr_base 68 k boost-graph x86_64 1.83.0-0.fc40 copr_base 152 k boost-iostreams x86_64 1.83.0-0.fc40 copr_base 42 k boost-json x86_64 1.83.0-0.fc40 copr_base 143 k boost-locale x86_64 1.83.0-0.fc40 copr_base 212 k boost-log x86_64 1.83.0-0.fc40 copr_base 493 k boost-math x86_64 1.83.0-0.fc40 copr_base 218 k boost-nowide x86_64 1.83.0-0.fc40 copr_base 21 k boost-numpy3 x86_64 1.83.0-0.fc40 copr_base 30 k boost-program-options x86_64 1.83.0-0.fc40 copr_base 110 k boost-python3 x86_64 1.83.0-0.fc40 copr_base 97 k boost-random x86_64 1.83.0-0.fc40 copr_base 24 k boost-regex x86_64 1.83.0-0.fc40 copr_base 112 k boost-serialization x86_64 1.83.0-0.fc40 copr_base 135 k boost-stacktrace x86_64 1.83.0-0.fc40 copr_base 30 k boost-system x86_64 1.83.0-0.fc40 copr_base 16 k boost-test x86_64 1.83.0-0.fc40 copr_base 240 k boost-thread x86_64 1.83.0-0.fc40 copr_base 62 k boost-timer x86_64 1.83.0-0.fc40 copr_base 22 k boost-type_erasure x86_64 1.83.0-0.fc40 copr_base 34 k boost-wave x86_64 1.83.0-0.fc40 copr_base 225 k cairo x86_64 1.18.0-1.fc40 fedora 710 k cmake-data noarch 3.27.7-1.fc40 fedora 2.2 M cmake-filesystem x86_64 3.27.7-1.fc40 fedora 19 k cmake-rpm-macros noarch 3.27.7-1.fc40 fedora 19 k cpp x86_64 13.2.1-5.fc40 fedora 11 M default-fonts-core-sans noarch 4.0-9.fc40 fedora 32 k dejavu-sans-fonts noarch 2.37-21.fc40 fedora 1.3 M emacs-filesystem noarch 1:29.1-14.fc40 fedora 7.4 k expat x86_64 2.5.0-3.fc39 fedora 110 k flexiblas x86_64 3.3.1-5.fc39 fedora 33 k flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k fontconfig x86_64 2.14.2-5.fc40 fedora 297 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freeglut x86_64 3.4.0-4.fc39 fedora 154 k freetype x86_64 2.13.1-2.fc39 fedora 414 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc-plugin-annobin x86_64 13.2.1-5.fc40 fedora 49 k gl-manpages noarch 1.1-29.20190306.fc40 fedora 1.2 M glib2 x86_64 2.78.1-1.fc40 fedora 2.8 M glibc-devel x86_64 2.38.9000-26.fc40 fedora 100 k glibc-headers-x86 noarch 2.38.9000-26.fc40 fedora 585 k gnutls x86_64 3.8.2-2.fc40 fedora 1.1 M google-noto-fonts-common noarch 20230801-4.fc40 fedora 17 k google-noto-sans-vf-fonts noarch 20230801-4.fc40 fedora 583 k graphite2 x86_64 1.3.14-13.fc40 fedora 95 k groff-base x86_64 1.23.0-3.fc40 fedora 1.1 M guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.3.0-2.fc40 fedora 995 k hwdata noarch 0.376-1.fc40 fedora 1.6 M jbigkit-libs x86_64 2.1-27.fc40 fedora 53 k jsoncpp x86_64 1.9.5-5.fc39 fedora 99 k kernel-headers x86_64 6.7.0-0.rc3.git0.1.fc40 fedora 1.6 M lcms2 x86_64 2.15-2.fc39 fedora 177 k libICE x86_64 1.1.1-1.fc40 fedora 74 k libICE-devel x86_64 1.1.1-1.fc40 fedora 46 k libSM x86_64 1.2.4-1.fc40 fedora 43 k libSM-devel x86_64 1.2.4-1.fc40 fedora 12 k libX11 x86_64 1.8.7-1.fc40 fedora 647 k libX11-common noarch 1.8.7-1.fc40 fedora 176 k libX11-devel x86_64 1.8.7-1.fc40 fedora 1.0 M libX11-xcb x86_64 1.8.7-1.fc40 fedora 12 k libXau x86_64 1.0.11-4.fc40 fedora 31 k libXau-devel x86_64 1.0.11-4.fc40 fedora 14 k libXdmcp x86_64 1.1.4-1.fc40 fedora 36 k libXext x86_64 1.3.5-4.fc40 fedora 39 k libXext-devel x86_64 1.3.5-4.fc40 fedora 86 k libXfixes x86_64 6.0.1-1.fc40 fedora 19 k libXfixes-devel x86_64 6.0.1-1.fc40 fedora 12 k libXfont2 x86_64 2.0.6-1.fc40 fedora 147 k libXft x86_64 2.3.8-4.fc40 fedora 72 k libXi x86_64 1.8.1-3.fc40 fedora 40 k libXmu x86_64 1.1.4-4.fc40 fedora 76 k libXrender x86_64 0.9.11-4.fc40 fedora 27 k libXt x86_64 1.3.0-1.fc40 fedora 179 k libXt-devel x86_64 1.3.0-1.fc40 fedora 460 k libXxf86vm x86_64 1.1.5-4.fc40 fedora 18 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libdrm x86_64 2.4.117-1.fc40 fedora 156 k libdrm-devel x86_64 2.4.117-1.fc40 fedora 178 k libfontenc x86_64 1.1.7-1.fc40 fedora 32 k libgfortran x86_64 13.2.1-5.fc40 fedora 906 k libglvnd x86_64 1:1.7.0-1.fc40 fedora 133 k libglvnd-core-devel x86_64 1:1.7.0-1.fc40 fedora 17 k libglvnd-egl x86_64 1:1.7.0-1.fc40 fedora 36 k libglvnd-gles x86_64 1:1.7.0-1.fc40 fedora 31 k libglvnd-glx x86_64 1:1.7.0-1.fc40 fedora 142 k libglvnd-opengl x86_64 1:1.7.0-1.fc40 fedora 42 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libimagequant x86_64 4.0.3-1.fc40 fedora 321 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k libjpeg-turbo-devel x86_64 2.1.4-3.fc39 fedora 98 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpciaccess x86_64 0.16-9.fc39 fedora 26 k libpciaccess-devel x86_64 0.16-9.fc39 fedora 12 k libpng x86_64 2:1.6.40-1.fc40 fedora 119 k libqhull_r x86_64 1:8.0.2-2.fc40 fedora 199 k libquadmath x86_64 13.2.1-5.fc40 fedora 197 k libquadmath-devel x86_64 13.2.1-5.fc40 fedora 39 k libraqm x86_64 0.8.0-5.fc39 fedora 20 k libstdc++-devel x86_64 13.2.1-5.fc40 fedora 2.6 M libtiff x86_64 4.5.0-3.fc40 fedora 305 k libtool-ltdl x86_64 2.4.7-8.fc40 fedora 36 k libunwind x86_64 1.7.2-1.fc40 fedora 70 k libuuid-devel x86_64 2.39.2-1.fc40 fedora 24 k libuv x86_64 1:1.47.0-3.fc40 fedora 250 k libwayland-client x86_64 1.22.0-2.fc39 fedora 34 k libwayland-server x86_64 1.22.0-2.fc39 fedora 42 k libwebp x86_64 1.3.2-2.fc40 fedora 284 k libwebp-devel x86_64 1.3.2-2.fc40 fedora 39 k libxcb x86_64 1.16-2.fc40 fedora 238 k libxcb-devel x86_64 1.16-2.fc40 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxkbfile x86_64 1.1.2-1.fc40 fedora 90 k libxshmfence x86_64 1.3.2-1.fc40 fedora 12 k libxslt x86_64 1.1.39-1.fc40 fedora 187 k libzstd-devel x86_64 1.5.5-4.fc39 fedora 51 k mesa-libEGL x86_64 23.3.0-1.fc40 fedora 133 k mesa-libGL x86_64 23.3.0-1.fc40 fedora 175 k mesa-libGL-devel x86_64 23.3.0-1.fc40 fedora 36 k mesa-libGLU x86_64 9.0.3-1.fc39 fedora 160 k mesa-libGLU-devel x86_64 9.0.3-1.fc39 fedora 12 k mesa-libgbm x86_64 23.3.0-1.fc40 fedora 45 k mesa-libglapi x86_64 23.3.0-1.fc40 fedora 52 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k ncurses x86_64 6.4-8.20231001.fc40 fedora 418 k nettle x86_64 3.9.1-2.fc39 fedora 425 k openblas x86_64 0.3.25-1.fc40 fedora 38 k openblas-openmp x86_64 0.3.25-1.fc40 fedora 5.0 M openjpeg2 x86_64 2.5.0-5.fc40 fedora 178 k perl-AutoLoader noarch 5.74-503.fc40 fedora 21 k perl-B x86_64 1.88-503.fc40 fedora 177 k perl-Carp noarch 1.54-500.fc39 fedora 29 k perl-Class-Struct noarch 0.68-503.fc40 fedora 22 k perl-Data-Dumper x86_64 2.188-501.fc39 fedora 56 k perl-Digest noarch 1.20-500.fc39 fedora 25 k perl-Digest-MD5 x86_64 2.58-501.fc40 fedora 35 k perl-DynaLoader x86_64 1.54-503.fc40 fedora 26 k perl-Encode x86_64 4:3.20-501.fc40 fedora 1.7 M perl-Errno x86_64 1.37-503.fc40 fedora 15 k perl-Exporter noarch 5.77-500.fc39 fedora 31 k perl-Fcntl x86_64 1.15-503.fc40 fedora 21 k perl-File-Basename noarch 2.86-503.fc40 fedora 17 k perl-File-Path noarch 2.18-501.fc40 fedora 35 k perl-File-Temp noarch 1:0.231.100-501.fc40 fedora 59 k perl-File-stat noarch 1.13-503.fc40 fedora 17 k perl-FileHandle noarch 2.05-503.fc40 fedora 16 k perl-Getopt-Long noarch 1:2.57-1.fc40 fedora 63 k perl-Getopt-Std noarch 1.13-503.fc40 fedora 16 k perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k perl-IO x86_64 1.52-503.fc40 fedora 82 k perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k perl-IO-Socket-SSL noarch 2.084-1.fc40 fedora 225 k perl-IPC-Open3 noarch 1.22-503.fc40 fedora 22 k perl-MIME-Base64 x86_64 3.16-501.fc40 fedora 29 k perl-Mozilla-CA noarch 20230821-1.fc40 fedora 13 k perl-Net-SSLeay x86_64 1.92-10.fc39 fedora 360 k perl-POSIX x86_64 2.13-503.fc40 fedora 97 k perl-PathTools x86_64 3.89-500.fc39 fedora 87 k perl-Pod-Escapes noarch 1:1.07-501.fc40 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k perl-Scalar-List-Utils x86_64 5:1.63-500.fc39 fedora 72 k perl-SelectSaver noarch 1.02-503.fc40 fedora 12 k perl-Socket x86_64 4:2.037-3.fc39 fedora 55 k perl-Storable x86_64 1:3.32-500.fc39 fedora 99 k perl-Symbol noarch 1.09-503.fc40 fedora 14 k perl-Term-ANSIColor noarch 5.01-502.fc40 fedora 47 k perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k perl-URI noarch 5.21-1.fc40 fedora 125 k perl-base noarch 2.27-503.fc40 fedora 16 k perl-constant noarch 1.33-501.fc39 fedora 22 k perl-if noarch 0.61.000-503.fc40 fedora 14 k perl-interpreter x86_64 4:5.38.2-503.fc40 fedora 72 k perl-libnet noarch 3.15-501.fc39 fedora 129 k perl-libs x86_64 4:5.38.2-503.fc40 fedora 2.3 M perl-locale noarch 1.10-503.fc40 fedora 14 k perl-mro x86_64 1.28-503.fc40 fedora 29 k perl-overload noarch 1.37-503.fc40 fedora 46 k perl-overloading noarch 0.02-503.fc40 fedora 13 k perl-parent noarch 1:0.241-500.fc39 fedora 14 k perl-podlators noarch 1:5.01-500.fc39 fedora 125 k perl-vars noarch 1.05-503.fc40 fedora 13 k pixman x86_64 0.42.2-2.fc39 fedora 288 k pyproject-rpm-macros noarch 1.10.0-1.fc40 fedora 41 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python-rpm-macros noarch 3.12-4.fc40 fedora 19 k python3 x86_64 3.12.0-2.fc40 fedora 26 k python3-appdirs noarch 1.4.4-11.fc39 fedora 23 k python3-brotli x86_64 1.1.0-1.fc40 fedora 337 k python3-cairo x86_64 1.25.1-1.fc40 fedora 128 k python3-charset-normalizer noarch 3.3.2-1.fc40 fedora 107 k python3-contourpy x86_64 1.2.0-1.fc40 fedora 265 k python3-cycler noarch 0.11.0-9.fc39 fedora 21 k python3-dateutil noarch 1:2.8.2-11.fc40 fedora 356 k python3-fonttools x86_64 4.44.3-1.fc40 fedora 2.9 M python3-fs noarch 2.4.16-5.fc39 fedora 302 k python3-idna noarch 3.6-1.fc40 fedora 107 k python3-kiwisolver x86_64 1.4.5-1.fc40 fedora 68 k python3-libs x86_64 3.12.0-2.fc40 fedora 9.2 M python3-lxml x86_64 4.9.3-4.fc40 fedora 1.4 M python3-matplotlib-data noarch 3.8.1-1.fc40 fedora 524 k python3-matplotlib-data-fonts noarch 3.8.1-1.fc40 fedora 2.3 M python3-matplotlib-tk x86_64 3.8.1-1.fc40 fedora 48 k python3-numpy x86_64 1:1.26.0-2.fc40 fedora 7.5 M python3-numpy-f2py x86_64 1:1.26.0-2.fc40 fedora 509 k python3-olefile noarch 0.47-1.fc40 fedora 73 k python3-packaging noarch 23.2-2.fc40 fedora 125 k python3-pillow x86_64 10.1.0-1.fc40 fedora 927 k python3-pillow-tk x86_64 10.1.0-1.fc40 fedora 29 k python3-pooch noarch 1.5.2-12.fc39 fedora 126 k python3-pyparsing noarch 3.0.9-11.fc39 fedora 254 k python3-requests noarch 2.28.2-7.fc40 fedora 152 k python3-rpm-generators noarch 14-8.fc40 fedora 30 k python3-rpm-macros noarch 3.12-4.fc40 fedora 14 k python3-scipy x86_64 1.11.3-3.fc40 fedora 16 M python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-tkinter x86_64 3.12.0-2.fc40 fedora 407 k python3-urllib3 noarch 1.26.18-1.fc40 fedora 274 k rhash x86_64 1.4.3-3.fc39 fedora 194 k tcl x86_64 1:8.6.13-1.fc40 fedora 1.1 M tk x86_64 1:8.6.13-1.fc40 fedora 1.6 M tzdata noarch 2023c-4.fc40 fedora 717 k vim-filesystem noarch 2:9.0.2120-1.fc40 fedora 18 k xkbcomp x86_64 1.4.6-7.fc40 fedora 101 k xkeyboard-config noarch 2.40-2.fc40 fedora 972 k xml-common noarch 0.6.3-62.fc40 fedora 31 k xorg-x11-proto-devel noarch 2023.2-3.fc40 fedora 298 k xorg-x11-server-common x86_64 1.20.14-27.fc40 fedora 36 k xorg-x11-xauth x86_64 1:1.1.2-5.fc40 fedora 35 k Transaction Summary ================================================================================ Install 269 Packages Total size: 207 M Total download size: 44 M Installed size: 863 M Downloading Packages: [SKIPPED] boost-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-atomic-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-chrono-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-container-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-context-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-contract-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-coroutine-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-date-time-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-devel-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-fiber-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-filesystem-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-graph-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-iostreams-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-json-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-locale-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-log-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-math-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-nowide-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-numpy3-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-program-options-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-python3-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-random-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-regex-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-serialization-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-stacktrace-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-system-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-test-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-thread-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-timer-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-type_erasure-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] boost-wave-1.83.0-0.fc40.x86_64.rpm: Already downloaded [SKIPPED] abattis-cantarell-vf-fonts-0.301-10.fc39.noarch.rpm: Already downloaded [SKIPPED] annobin-docs-12.32-1.fc40.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.32-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cairo-1.18.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cmake-3.27.7-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cmake-data-3.27.7-1.fc40.noarch.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.27.7-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cmake-rpm-macros-3.27.7-1.fc40.noarch.rpm: Already downloaded [SKIPPED] cpp-13.2.1-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] default-fonts-core-sans-4.0-9.fc40.noarch.rpm: Already downloaded [SKIPPED] emacs-filesystem-29.1-14.fc40.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-2.14.2-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gc-8.2.2-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] gcc-13.2.1-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] gcc-c++-13.2.1-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.2.1-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] glib2-2.78.1-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] glibc-devel-2.38.9000-26.fc40.x86_64.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.38.9000-26.fc40.noarch.rpm: Already downloaded [SKIPPED] gnutls-3.8.2-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] google-noto-fonts-common-20230801-4.fc40.noarch.rpm: Already downloaded [SKIPPED] google-noto-sans-vf-fonts-20230801-4.fc40.noarch.rpm: Already downloaded [SKIPPED] graphite2-1.3.14-13.fc40.x86_64.rpm: Already downloaded [SKIPPED] groff-base-1.23.0-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-8.3.0-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] hwdata-0.376-1.fc40.noarch.rpm: Already downloaded [SKIPPED] jsoncpp-1.9.5-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] kernel-headers-6.7.0-0.rc3.git0.1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libICE-1.1.1-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libSM-1.2.4-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libX11-1.8.7-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libX11-common-1.8.7-1.fc40.noarch.rpm: Already downloaded [SKIPPED] libX11-devel-1.8.7-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libX11-xcb-1.8.7-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libXau-1.0.11-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] libXau-devel-1.0.11-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] libXext-1.3.5-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] libXfixes-6.0.1-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libXrender-0.9.11-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] libXxf86vm-1.1.5-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] libdrm-2.4.117-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libgfortran-13.2.1-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-1.7.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-core-devel-1.7.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-devel-1.7.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-egl-1.7.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-gles-1.7.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-glx-1.7.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-opengl-1.7.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libicu-73.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libicu-devel-73.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libjpeg-turbo-2.1.4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libmpc-1.3.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpciaccess-0.16-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpng-1.6.40-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libquadmath-13.2.1-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] libquadmath-devel-13.2.1-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] libstdc++-devel-13.2.1-5.fc40.x86_64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-8.fc40.x86_64.rpm: Already downloaded [SKIPPED] libuv-1.47.0-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] libwayland-client-1.22.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libwayland-server-1.22.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxcb-1.16-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] libxcb-devel-1.16-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.36-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxshmfence-1.3.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] make-4.4.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] mesa-libEGL-23.3.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] mesa-libGL-23.3.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] mesa-libgbm-23.3.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] mesa-libglapi-23.3.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] ncurses-6.4-8.20231001.fc40.x86_64.rpm: Already downloaded [SKIPPED] nettle-3.9.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] openblas-0.3.25-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] openblas-openmp-0.3.25-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-AutoLoader-5.74-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-B-1.88-503.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-Carp-1.54-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.68-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Dumper-2.188-501.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Digest-1.20-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Digest-MD5-2.58-501.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-DynaLoader-1.54-503.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-Encode-3.20-501.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-Errno-1.37-503.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-Exporter-5.77-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.15-503.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-File-Basename-2.86-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-File-Path-2.18-501.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-File-Temp-0.231.100-501.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-File-stat-1.13-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-FileHandle-2.05-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Long-2.57-1.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Std-1.13-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Tiny-0.088-3.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-IO-1.52-503.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-IO-Socket-IP-0.42-1.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-IO-Socket-SSL-2.084-1.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-IPC-Open3-1.22-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-MIME-Base64-3.16-501.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-Mozilla-CA-20230821-1.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Net-SSLeay-1.92-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-POSIX-2.13-503.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-PathTools-3.89-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Pod-Escapes-1.07-501.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Perldoc-3.28.01-501.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Simple-3.45-4.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Usage-2.03-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Scalar-List-Utils-1.63-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-SelectSaver-1.02-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Socket-2.037-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Storable-3.32-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Symbol-1.09-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Term-ANSIColor-5.01-502.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Term-Cap-1.18-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Text-ParseWords-3.31-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Time-Local-1.350-3.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-URI-5.21-1.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-base-2.27-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-constant-1.33-501.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-if-0.61.000-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-interpreter-5.38.2-503.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-libnet-3.15-501.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-libs-5.38.2-503.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-locale-1.10-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-mro-1.28-503.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-overload-1.37-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-overloading-0.02-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-parent-0.241-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-podlators-5.01-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-vars-1.05-503.fc40.noarch.rpm: Already downloaded [SKIPPED] pixman-0.42.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] pyproject-rpm-macros-1.10.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] python-pip-wheel-23.2.1-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python-rpm-macros-3.12-4.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-3.12.0-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] python3-devel-3.12.0-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] python3-libs-3.12.0-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] python3-numpy-1.26.0-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] python3-packaging-23.2-2.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-generators-14-8.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-macros-3.12-4.fc40.noarch.rpm: Already downloaded [SKIPPED] python3-setuptools-68.2.2-1.fc40.noarch.rpm: Already downloaded [SKIPPED] rhash-1.4.3-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2023c-4.fc40.noarch.rpm: Already downloaded [SKIPPED] vim-filesystem-9.0.2120-1.fc40.noarch.rpm: Already downloaded [SKIPPED] xkeyboard-config-2.40-2.fc40.noarch.rpm: Already downloaded [SKIPPED] xml-common-0.6.3-62.fc40.noarch.rpm: Already downloaded [SKIPPED] xorg-x11-proto-devel-2023.2-3.fc40.noarch.rpm: Already downloaded [SKIPPED] zlib-devel-1.2.13-5.fc40.x86_64.rpm: Already downloaded (192/269): freeglut-3.4.0-4.fc39.x86_64.rpm 5.0 MB/s | 154 kB 00:00 (193/269): fribidi-1.0.13-2.fc39.x86_64.rpm 22 MB/s | 91 kB 00:00 (194/269): dejavu-sans-fonts-2.37-21.fc40.noarc 33 MB/s | 1.3 MB 00:00 (195/269): freeglut-devel-3.4.0-4.fc39.x86_64.r 22 MB/s | 945 kB 00:00 (196/269): jbigkit-libs-2.1-27.fc40.x86_64.rpm 13 MB/s | 53 kB 00:00 (197/269): libICE-devel-1.1.1-1.fc40.x86_64.rpm 12 MB/s | 46 kB 00:00 (198/269): lcms2-2.15-2.fc39.x86_64.rpm 16 MB/s | 177 kB 00:00 (199/269): libSM-devel-1.2.4-1.fc40.x86_64.rpm 2.7 MB/s | 12 kB 00:00 (200/269): libXdmcp-1.1.4-1.fc40.x86_64.rpm 9.9 MB/s | 36 kB 00:00 (201/269): libXext-devel-1.3.5-4.fc40.x86_64.rp 18 MB/s | 86 kB 00:00 (202/269): libXfixes-devel-6.0.1-1.fc40.x86_64. 4.2 MB/s | 12 kB 00:00 (203/269): libXfont2-2.0.6-1.fc40.x86_64.rpm 30 MB/s | 147 kB 00:00 (204/269): libXft-2.3.8-4.fc40.x86_64.rpm 13 MB/s | 72 kB 00:00 (205/269): libXi-1.8.1-3.fc40.x86_64.rpm 2.7 MB/s | 40 kB 00:00 (206/269): gl-manpages-1.1-29.20190306.fc40.noa 27 MB/s | 1.2 MB 00:00 (207/269): libXi-devel-1.8.1-3.fc40.x86_64.rpm 7.7 MB/s | 116 kB 00:00 (208/269): libXmu-1.1.4-4.fc40.x86_64.rpm 16 MB/s | 76 kB 00:00 (209/269): libXmu-devel-1.1.4-4.fc40.x86_64.rpm 8.8 MB/s | 27 kB 00:00 (210/269): libXt-1.3.0-1.fc40.x86_64.rpm 31 MB/s | 179 kB 00:00 (211/269): libfontenc-1.1.7-1.fc40.x86_64.rpm 11 MB/s | 32 kB 00:00 (212/269): libdrm-devel-2.4.117-1.fc40.x86_64.r 17 MB/s | 178 kB 00:00 (213/269): libXt-devel-1.3.0-1.fc40.x86_64.rpm 35 MB/s | 460 kB 00:00 (214/269): libimagequant-4.0.3-1.fc40.x86_64.rp 41 MB/s | 321 kB 00:00 (215/269): libjpeg-turbo-devel-2.1.4-3.fc39.x86 16 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libxslt-1.1.39-1.fc40.x86_64.rpm 17 MB/s | 187 kB 00:00 (231/269): mesa-libGLU-9.0.3-1.fc39.x86_64.rpm 22 MB/s | 160 kB 00:00 (232/269): perl-macros-5.38.2-503.fc40.noarch.r 5.0 MB/s | 13 kB 00:00 (233/269): openjpeg2-2.5.0-5.fc40.x86_64.rpm 31 MB/s | 178 kB 00:00 (234/269): pybind11-devel-2.11.1-1.fc39.x86_64. 51 MB/s | 176 kB 00:00 (235/269): python3-appdirs-1.4.4-11.fc39.noarch 7.3 MB/s | 23 kB 00:00 (236/269): python3-charset-normalizer-3.3.2-1.f 42 MB/s | 107 kB 00:00 (237/269): python3-cairo-1.25.1-1.fc40.x86_64.r 33 MB/s | 128 kB 00:00 (238/269): python3-cycler-0.11.0-9.fc39.noarch. 6.6 MB/s | 21 kB 00:00 (239/269): python3-dateutil-2.8.2-11.fc40.noarc 133 MB/s | 356 kB 00:00 (240/269): python3-brotli-1.1.0-1.fc40.x86_64.r 27 MB/s | 337 kB 00:00 (241/269): python3-contourpy-1.2.0-1.fc40.x86_6 25 MB/s | 265 kB 00:00 (242/269): python3-flaky-3.7.0-12.fc39.noarch.r 12 MB/s | 45 kB 00:00 (243/269): python3-idna-3.6-1.fc40.noarch.rpm 10 MB/s | 107 kB 00:00 (244/269): python3-fs-2.4.16-5.fc39.noarch.rpm 23 MB/s | 302 kB 00:00 (245/269): python3-kiwisolver-1.4.5-1.fc40.x86_ 3.3 MB/s | 68 kB 00:00 (246/269): python3-lxml-4.9.3-4.fc40.x86_64.rpm 47 MB/s | 1.4 MB 00:00 (247/269): python3-fonttools-4.44.3-1.fc40.x86_ 56 MB/s | 2.9 MB 00:00 (248/269): python3-matplotlib-data-3.8.1-1.fc40 23 MB/s | 524 kB 00:00 (249/269): python3-matplotlib-tk-3.8.1-1.fc40.x 5.2 MB/s | 48 kB 00:00 (250/269): python3-numpy-f2py-1.26.0-2.fc40.x86 114 MB/s | 509 kB 00:00 (251/269): python3-olefile-0.47-1.fc40.noarch.r 28 MB/s | 73 kB 00:00 (252/269): python3-matplotlib-data-fonts-3.8.1- 49 MB/s | 2.3 MB 00:00 (253/269): python3-pillow-tk-10.1.0-1.fc40.x86_ 7.1 MB/s | 29 kB 00:00 (254/269): python3-pillow-10.1.0-1.fc40.x86_64. 49 MB/s | 927 kB 00:00 (255/269): python3-pooch-1.5.2-12.fc39.noarch.r 42 MB/s | 126 kB 00:00 (256/269): python3-pyparsing-3.0.9-11.fc39.noar 56 MB/s | 254 kB 00:00 (257/269): python3-requests-2.28.2-7.fc40.noarc 34 MB/s | 152 kB 00:00 (258/269): 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cmake-data-3.27.7-1.fc40.noarch 245/269 Installing : annobin-docs-12.32-1.fc40.noarch 246/269 Installing : boost-test-1.83.0-0.fc40.x86_64 247/269 Installing : boost-stacktrace-1.83.0-0.fc40.x86_64 248/269 Installing : boost-serialization-1.83.0-0.fc40.x86_64 249/269 Installing : boost-random-1.83.0-0.fc40.x86_64 250/269 Installing : boost-program-options-1.83.0-0.fc40.x86_64 251/269 Installing : boost-nowide-1.83.0-0.fc40.x86_64 252/269 Installing : boost-math-1.83.0-0.fc40.x86_64 253/269 Installing : boost-iostreams-1.83.0-0.fc40.x86_64 254/269 Installing : boost-contract-1.83.0-0.fc40.x86_64 255/269 Installing : boost-1.83.0-0.fc40.x86_64 256/269 Installing : boost-devel-1.83.0-0.fc40.x86_64 257/269 Installing : annobin-plugin-gcc-12.32-1.fc40.x86_64 258/269 Running scriptlet: annobin-plugin-gcc-12.32-1.fc40.x86_64 258/269 Installing : pybind11-devel-2.11.1-1.fc39.x86_64 259/269 Installing : gcc-c++-13.2.1-5.fc40.x86_64 260/269 Installing : gcc-plugin-annobin-13.2.1-5.fc40.x86_64 261/269 Running scriptlet: gcc-plugin-annobin-13.2.1-5.fc40.x86_64 261/269 Installing : xorg-x11-server-Xvfb-1.20.14-27.fc40.x86_64 262/269 Installing : python3-flaky-3.7.0-12.fc39.noarch 263/269 Installing : python3-wheel-1:0.41.2-1.fc40.noarch 264/269 Installing : perl-macros-4:5.38.2-503.fc40.noarch 265/269 Installing : freeglut-devel-3.4.0-4.fc39.x86_64 266/269 Installing : libtiff-devel-4.5.0-3.fc40.x86_64 267/269 Installing : libXi-devel-1.8.1-3.fc40.x86_64 268/269 Installing : libXmu-devel-1.1.4-4.fc40.x86_64 269/269 Running scriptlet: fontconfig-2.14.2-5.fc40.x86_64 269/269 Running scriptlet: libXmu-devel-1.1.4-4.fc40.x86_64 269/269 Installed: abattis-cantarell-vf-fonts-0.301-10.fc39.noarch annobin-docs-12.32-1.fc40.noarch annobin-plugin-gcc-12.32-1.fc40.x86_64 boost-1.83.0-0.fc40.x86_64 boost-atomic-1.83.0-0.fc40.x86_64 boost-chrono-1.83.0-0.fc40.x86_64 boost-container-1.83.0-0.fc40.x86_64 boost-context-1.83.0-0.fc40.x86_64 boost-contract-1.83.0-0.fc40.x86_64 boost-coroutine-1.83.0-0.fc40.x86_64 boost-date-time-1.83.0-0.fc40.x86_64 boost-devel-1.83.0-0.fc40.x86_64 boost-fiber-1.83.0-0.fc40.x86_64 boost-filesystem-1.83.0-0.fc40.x86_64 boost-graph-1.83.0-0.fc40.x86_64 boost-iostreams-1.83.0-0.fc40.x86_64 boost-json-1.83.0-0.fc40.x86_64 boost-locale-1.83.0-0.fc40.x86_64 boost-log-1.83.0-0.fc40.x86_64 boost-math-1.83.0-0.fc40.x86_64 boost-nowide-1.83.0-0.fc40.x86_64 boost-numpy3-1.83.0-0.fc40.x86_64 boost-program-options-1.83.0-0.fc40.x86_64 boost-python3-1.83.0-0.fc40.x86_64 boost-random-1.83.0-0.fc40.x86_64 boost-regex-1.83.0-0.fc40.x86_64 boost-serialization-1.83.0-0.fc40.x86_64 boost-stacktrace-1.83.0-0.fc40.x86_64 boost-system-1.83.0-0.fc40.x86_64 boost-test-1.83.0-0.fc40.x86_64 boost-thread-1.83.0-0.fc40.x86_64 boost-timer-1.83.0-0.fc40.x86_64 boost-type_erasure-1.83.0-0.fc40.x86_64 boost-wave-1.83.0-0.fc40.x86_64 cairo-1.18.0-1.fc40.x86_64 cmake-3.27.7-1.fc40.x86_64 cmake-data-3.27.7-1.fc40.noarch cmake-filesystem-3.27.7-1.fc40.x86_64 cmake-rpm-macros-3.27.7-1.fc40.noarch cpp-13.2.1-5.fc40.x86_64 default-fonts-core-sans-4.0-9.fc40.noarch dejavu-sans-fonts-2.37-21.fc40.noarch emacs-filesystem-1:29.1-14.fc40.noarch expat-2.5.0-3.fc39.x86_64 flexiblas-3.3.1-5.fc39.x86_64 flexiblas-netlib-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 fontconfig-2.14.2-5.fc40.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freeglut-3.4.0-4.fc39.x86_64 freeglut-devel-3.4.0-4.fc39.x86_64 freetype-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-5.fc40.x86_64 gcc-c++-13.2.1-5.fc40.x86_64 gcc-plugin-annobin-13.2.1-5.fc40.x86_64 gl-manpages-1.1-29.20190306.fc40.noarch glib2-2.78.1-1.fc40.x86_64 glibc-devel-2.38.9000-26.fc40.x86_64 glibc-headers-x86-2.38.9000-26.fc40.noarch gnutls-3.8.2-2.fc40.x86_64 google-noto-fonts-common-20230801-4.fc40.noarch google-noto-sans-vf-fonts-20230801-4.fc40.noarch graphite2-1.3.14-13.fc40.x86_64 groff-base-1.23.0-3.fc40.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.3.0-2.fc40.x86_64 hwdata-0.376-1.fc40.noarch jbigkit-libs-2.1-27.fc40.x86_64 jsoncpp-1.9.5-5.fc39.x86_64 kernel-headers-6.7.0-0.rc3.git0.1.fc40.x86_64 lcms2-2.15-2.fc39.x86_64 libICE-1.1.1-1.fc40.x86_64 libICE-devel-1.1.1-1.fc40.x86_64 libSM-1.2.4-1.fc40.x86_64 libSM-devel-1.2.4-1.fc40.x86_64 libX11-1.8.7-1.fc40.x86_64 libX11-common-1.8.7-1.fc40.noarch libX11-devel-1.8.7-1.fc40.x86_64 libX11-xcb-1.8.7-1.fc40.x86_64 libXau-1.0.11-4.fc40.x86_64 libXau-devel-1.0.11-4.fc40.x86_64 libXdmcp-1.1.4-1.fc40.x86_64 libXext-1.3.5-4.fc40.x86_64 libXext-devel-1.3.5-4.fc40.x86_64 libXfixes-6.0.1-1.fc40.x86_64 libXfixes-devel-6.0.1-1.fc40.x86_64 libXfont2-2.0.6-1.fc40.x86_64 libXft-2.3.8-4.fc40.x86_64 libXi-1.8.1-3.fc40.x86_64 libXi-devel-1.8.1-3.fc40.x86_64 libXmu-1.1.4-4.fc40.x86_64 libXmu-devel-1.1.4-4.fc40.x86_64 libXrender-0.9.11-4.fc40.x86_64 libXt-1.3.0-1.fc40.x86_64 libXt-devel-1.3.0-1.fc40.x86_64 libXxf86vm-1.1.5-4.fc40.x86_64 libb2-0.98.1-9.fc39.x86_64 libdrm-2.4.117-1.fc40.x86_64 libdrm-devel-2.4.117-1.fc40.x86_64 libfontenc-1.1.7-1.fc40.x86_64 libgfortran-13.2.1-5.fc40.x86_64 libglvnd-1:1.7.0-1.fc40.x86_64 libglvnd-core-devel-1:1.7.0-1.fc40.x86_64 libglvnd-devel-1:1.7.0-1.fc40.x86_64 libglvnd-egl-1:1.7.0-1.fc40.x86_64 libglvnd-gles-1:1.7.0-1.fc40.x86_64 libglvnd-glx-1:1.7.0-1.fc40.x86_64 libglvnd-opengl-1:1.7.0-1.fc40.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libimagequant-4.0.3-1.fc40.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 libjpeg-turbo-devel-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpciaccess-0.16-9.fc39.x86_64 libpciaccess-devel-0.16-9.fc39.x86_64 libpng-2:1.6.40-1.fc40.x86_64 libqhull_r-1:8.0.2-2.fc40.x86_64 libquadmath-13.2.1-5.fc40.x86_64 libquadmath-devel-13.2.1-5.fc40.x86_64 libraqm-0.8.0-5.fc39.x86_64 libstdc++-devel-13.2.1-5.fc40.x86_64 libtiff-4.5.0-3.fc40.x86_64 libtiff-devel-4.5.0-3.fc40.x86_64 libtool-ltdl-2.4.7-8.fc40.x86_64 libunwind-1.7.2-1.fc40.x86_64 libuuid-devel-2.39.2-1.fc40.x86_64 libuv-1:1.47.0-3.fc40.x86_64 libwayland-client-1.22.0-2.fc39.x86_64 libwayland-server-1.22.0-2.fc39.x86_64 libwebp-1.3.2-2.fc40.x86_64 libwebp-devel-1.3.2-2.fc40.x86_64 libxcb-1.16-2.fc40.x86_64 libxcb-devel-1.16-2.fc40.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxkbfile-1.1.2-1.fc40.x86_64 libxshmfence-1.3.2-1.fc40.x86_64 libxslt-1.1.39-1.fc40.x86_64 libzstd-devel-1.5.5-4.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mesa-libEGL-23.3.0-1.fc40.x86_64 mesa-libGL-23.3.0-1.fc40.x86_64 mesa-libGL-devel-23.3.0-1.fc40.x86_64 mesa-libGLU-9.0.3-1.fc39.x86_64 mesa-libGLU-devel-9.0.3-1.fc39.x86_64 mesa-libgbm-23.3.0-1.fc40.x86_64 mesa-libglapi-23.3.0-1.fc40.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 ncurses-6.4-8.20231001.fc40.x86_64 nettle-3.9.1-2.fc39.x86_64 openblas-0.3.25-1.fc40.x86_64 openblas-openmp-0.3.25-1.fc40.x86_64 openjpeg2-2.5.0-5.fc40.x86_64 perl-AutoLoader-5.74-503.fc40.noarch perl-B-1.88-503.fc40.x86_64 perl-Carp-1.54-500.fc39.noarch perl-Class-Struct-0.68-503.fc40.noarch perl-Data-Dumper-2.188-501.fc39.x86_64 perl-Digest-1.20-500.fc39.noarch perl-Digest-MD5-2.58-501.fc40.x86_64 perl-DynaLoader-1.54-503.fc40.x86_64 perl-Encode-4:3.20-501.fc40.x86_64 perl-Errno-1.37-503.fc40.x86_64 perl-Exporter-5.77-500.fc39.noarch perl-Fcntl-1.15-503.fc40.x86_64 perl-File-Basename-2.86-503.fc40.noarch perl-File-Path-2.18-501.fc40.noarch perl-File-Temp-1:0.231.100-501.fc40.noarch perl-File-stat-1.13-503.fc40.noarch perl-FileHandle-2.05-503.fc40.noarch perl-Getopt-Long-1:2.57-1.fc40.noarch perl-Getopt-Std-1.13-503.fc40.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-IO-1.52-503.fc40.x86_64 perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.084-1.fc40.noarch perl-IPC-Open3-1.22-503.fc40.noarch perl-MIME-Base64-3.16-501.fc40.x86_64 perl-Mozilla-CA-20230821-1.fc40.noarch perl-Net-SSLeay-1.92-10.fc39.x86_64 perl-POSIX-2.13-503.fc40.x86_64 perl-PathTools-3.89-500.fc39.x86_64 perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.x86_64 perl-SelectSaver-1.02-503.fc40.noarch perl-Socket-4:2.037-3.fc39.x86_64 perl-Storable-1:3.32-500.fc39.x86_64 perl-Symbol-1.09-503.fc40.noarch perl-Term-ANSIColor-5.01-502.fc40.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-base-2.27-503.fc40.noarch perl-constant-1.33-501.fc39.noarch perl-if-0.61.000-503.fc40.noarch perl-interpreter-4:5.38.2-503.fc40.x86_64 perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.2-503.fc40.x86_64 perl-locale-1.10-503.fc40.noarch perl-macros-4:5.38.2-503.fc40.noarch perl-mro-1.28-503.fc40.x86_64 perl-overload-1.37-503.fc40.noarch perl-overloading-0.02-503.fc40.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-vars-1.05-503.fc40.noarch pixman-0.42.2-2.fc39.x86_64 pybind11-devel-2.11.1-1.fc39.x86_64 pyproject-rpm-macros-1.10.0-1.fc40.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0-2.fc40.x86_64 python3-appdirs-1.4.4-11.fc39.noarch python3-brotli-1.1.0-1.fc40.x86_64 python3-cairo-1.25.1-1.fc40.x86_64 python3-charset-normalizer-3.3.2-1.fc40.noarch python3-contourpy-1.2.0-1.fc40.x86_64 python3-cycler-0.11.0-9.fc39.noarch python3-dateutil-1:2.8.2-11.fc40.noarch python3-devel-3.12.0-2.fc40.x86_64 python3-flaky-3.7.0-12.fc39.noarch python3-fonttools-4.44.3-1.fc40.x86_64 python3-fs-2.4.16-5.fc39.noarch python3-idna-3.6-1.fc40.noarch python3-kiwisolver-1.4.5-1.fc40.x86_64 python3-libs-3.12.0-2.fc40.x86_64 python3-lxml-4.9.3-4.fc40.x86_64 python3-matplotlib-3.8.1-1.fc40.x86_64 python3-matplotlib-data-3.8.1-1.fc40.noarch python3-matplotlib-data-fonts-3.8.1-1.fc40.noarch python3-matplotlib-tk-3.8.1-1.fc40.x86_64 python3-numpy-1:1.26.0-2.fc40.x86_64 python3-numpy-f2py-1:1.26.0-2.fc40.x86_64 python3-olefile-0.47-1.fc40.noarch python3-packaging-23.2-2.fc40.noarch python3-pillow-10.1.0-1.fc40.x86_64 python3-pillow-tk-10.1.0-1.fc40.x86_64 python3-pooch-1.5.2-12.fc39.noarch python3-pyparsing-3.0.9-11.fc39.noarch python3-requests-2.28.2-7.fc40.noarch python3-rpm-generators-14-8.fc40.noarch python3-rpm-macros-3.12-4.fc40.noarch python3-scipy-1.11.3-3.fc40.x86_64 python3-setuptools-68.2.2-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-tkinter-3.12.0-2.fc40.x86_64 python3-urllib3-1.26.18-1.fc40.noarch python3-wheel-1:0.41.2-1.fc40.noarch rhash-1.4.3-3.fc39.x86_64 tcl-1:8.6.13-1.fc40.x86_64 tk-1:8.6.13-1.fc40.x86_64 tzdata-2023c-4.fc40.noarch vim-filesystem-2:9.0.2120-1.fc40.noarch xkbcomp-1.4.6-7.fc40.x86_64 xkeyboard-config-2.40-2.fc40.noarch xml-common-0.6.3-62.fc40.noarch xorg-x11-proto-devel-2023.2-3.fc40.noarch xorg-x11-server-Xvfb-1.20.14-27.fc40.x86_64 xorg-x11-server-common-1.20.14-27.fc40.x86_64 xorg-x11-xauth-1:1.1.2-5.fc40.x86_64 zlib-devel-1.2.13-5.fc40.x86_64 Complete! Finish: build setup for smoldyn-2.72-2.fc40.src.rpm Start: rpmbuild smoldyn-2.72-2.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1692316800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.EN7Nmh + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.72 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.72.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.72 + rm -rf /builddir/build/BUILD/Smoldyn-2.72-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Smoldyn-2.72-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (smoldyn-fix_libpaths.patch): + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 370 (offset 44 lines). + echo 'Patch #2 (smoldyn-create_soname.patch):' Patch #2 (smoldyn-create_soname.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 490 (offset 5 lines). Hunk #2 succeeded at 522 (offset 52 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.eMNnCW + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.72 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 13.2.1 -- The C compiler identification is GNU 13.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.72' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.5.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.11.1") -- [TEST] Found 15 test scripts -- Configuring done (1.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.72 -B/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend /usr/bin/gmake -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/libSteve /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 2%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o [ 2%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o [ 4%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o [ 4%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/StructuredGrid.cpp cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Geometry.c cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Species.cpp cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/ReactionEquation.cpp [ 6%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.cpp [ 7%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Kairos.cpp [ 8%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Io.cpp [ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Geometry.cpp [ 11%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/nsvc.cpp [ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/List.c [ 13%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/math2.c [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/opengl2.c [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/parse.c [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/queue.c [ 18%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.c [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Rn.c [ 20%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/RnSort.c [ 22%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/rxnparam.c [ 23%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SimCommand.c [ 24%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Sphere.c [ 25%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/string2.c [ 27%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SurfaceParam.c [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Zn.c gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 28%] Built target nsv [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SFMT/SFMT.c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/string2.c: In function ‘strmatheval’: /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/string2.c:1415:9: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] 1415 | strncpy(expr,expression,STRCHAR); | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 29%] Built target Steve /usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/gmake -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend /usr/bin/gmake -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build /usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 32%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o [ 32%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c [ 33%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o [ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 35%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcmd.c In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ In file included from /usr/include/stdio.h:980, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:980, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ In file included from /usr/include/stdio.h:980, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 37%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c [ 38%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c [ 39%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:980, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 40%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 41%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcmd.c [ 43%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcmd.c [ 44%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 45%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 46%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolport.c [ 48%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 49%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c [ 50%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c [ 51%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolreact.c In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:980, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:980, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 53%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 54%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 55%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 56%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp [ 58%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 59%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolgraphics.c In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes] /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes] [ 60%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 61%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 62%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolmolec.c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13/cstdio:42, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 64%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolport.c [ 65%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolport.c [ 66%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 67%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 69%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolreact.c [ 70%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolreact.c [ 71%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 72%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes] /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes] [ 74%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 75%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 76%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp [ 77%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13/cstdio:42, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/13/cstdio:42, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 79%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 80%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 81%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 82%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp [ 83%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 85%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp [ 86%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.72 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o 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source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’ 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’ 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ [ 87%] Linking CXX static library libsmoldyn_static.a /usr/bin/cmake -P CMakeFiles/smoldyn_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsmoldyn_static.a CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 87%] Built target smoldyn_static [ 88%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib lib_pysmoldyn.a gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 88%] Built target _pysmoldyn /usr/bin/gmake -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 90%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/CallbackFunc.cpp [ 91%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/Command.cpp [ 92%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/Simulation.cpp /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/module.cpp /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.72 libsmoldyn_shared.so.2 libsmoldyn_shared.so gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 93%] Built target smoldyn_shared /usr/bin/gmake -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 95%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.cpp [ 96%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.72 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 96%] Built target smoldyn [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /builddir/build/BUILD/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1045:16: warning: type ‘struct simstruct’ violates the C++ One Definition Rule [-Wodr] 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a different type is defined in another translation unit 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1106:19: note: the first difference of corresponding definitions is field ‘callbacks’ 1106 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a type with different number of fields is defined in another translation unit 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’ 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’ 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 97%] Built target _smoldyn /usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build /usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py/smoldyn [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [100%] Built target copy_python_tree running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn creating build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-312/smoldyn running build_ext /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.72-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.72.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/smoldyn-2.72-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.72.dist-info/METADATA' adding 'smoldyn-2.72.dist-info/WHEEL' adding 'smoldyn-2.72.dist-info/top_level.txt' adding 'smoldyn-2.72.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [100%] Built target wheel gmake[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.MyCTbe + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64/libsmoldyn_shared.so.2.72 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/include/smoldyn/smoldynconfigure.h ~/build/BUILD/Smoldyn-2.72/redhat-linux-build/py ~/build/BUILD/Smoldyn-2.72 + pushd redhat-linux-build/py + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64/python3.12/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64/python3.12/site-packages/ ~/build/BUILD/Smoldyn-2.72 + popd + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.72-2.fc40 --unique-debug-suffix -2.72-2.fc40.x86_64 --unique-debug-src-base smoldyn-2.72-2.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.72 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.72-2.fc40.x86_64 3558 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.FWzSfC + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS ~/build/BUILD/Smoldyn-2.72/redhat-linux-build ~/build/BUILD/Smoldyn-2.72 + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + pushd redhat-linux-build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64/python3.12/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/lib64/python3.12/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:424 Here: 424 /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:436 Here: 436 /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:408 Test project /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_actions /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_api /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_func /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_var /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_getters /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sanity /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestMultiProcessHandler.cxx:1414 Checking test dependency graph... /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestMultiProcessHandler.cxx:1443 Checking test dependency graph end /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 2 /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:526 Start 2: test_api /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:687 2: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.72/tests/test_api.py" /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:807 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:986 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:989 Testing test_api ... /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.18 sec /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 3 /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:526 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:687 3: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.72/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:807 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 3: /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:986 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:989 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.21 sec /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 14 /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:526 Start 14: test_sanity /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:687 14: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.72/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:807 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 14: /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:39 14: (, '') /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:986 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:989 Testing test_sanity ... /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.16 sec /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/cmCTest.cxx:309 Current_Time: Dec 05 04:16 UTC /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:447 The following tests passed: /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:452 test_api /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:452 test_biosimulators /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:452 test_sanity /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:613 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.27.7/Source/CTest/cmCTestTestHandler.cxx:629 Total Test time (real) = 0.56 sec + popd + RPM_EC=0 ~/build/BUILD/Smoldyn-2.72 ++ jobs -p + exit 0 Processing files: smoldyn-2.72-2.fc40.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.s1YRoY + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/README.md /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.72-2.fc40 smoldyn(x86-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.72-2.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.izbYJG + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/BioNetGen /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/CMakeLists.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/Doxyfile.in /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/README.md /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/SmolCrowd /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/SmolEmulate /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/Smoldyn /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/_static /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/build_doxygen /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/conf.py /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/doxygen /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/examples /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/index.rst /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/libSteve /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/python /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/requirements.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/tikz /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/user /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.72-2.fc40.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.FoclGa + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/smoldyn-libs + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.72/License.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.72/LICENSE /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.72-2.fc40 smoldyn-libs(x86-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.72-2.fc40.x86_64 Provides: smoldyn-libs-devel = 2.72-2.fc40 smoldyn-libs-devel(x86-64) = 2.72-2.fc40 smoldyn-libs-static = 0:2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.72-2.fc40.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.4EQa7K + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/python3-smoldyn + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/License.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/LICENSE /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.72-2.fc40 python3-smoldyn = 2.72-2.fc40 python3-smoldyn(x86-64) = 2.72-2.fc40 python3.12-smoldyn = 2.72-2.fc40 python3.12dist(smoldyn) = 2.72 python3dist(smoldyn) = 2.72 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.72-2.fc40 Processing files: smoldyn-debugsource-2.72-2.fc40.x86_64 Provides: smoldyn-debugsource = 2.72-2.fc40 smoldyn-debugsource(x86-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.72-2.fc40.x86_64 Provides: debuginfo(build-id) = 5c9ca336819c78ee63fdf24e22fa12c112fd3947 smoldyn-debuginfo = 2.72-2.fc40 smoldyn-debuginfo(x86-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.72-2.fc40 Processing files: smoldyn-libs-debuginfo-2.72-2.fc40.x86_64 Provides: debuginfo(build-id) = e87738328835665743e8e3924b1689a7155cc1e5 libsmoldyn_shared.so.2.72-2.72-2.fc40.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.72-2.fc40 smoldyn-libs-debuginfo(x86-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.72-2.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64 Wrote: /builddir/build/RPMS/python3-smoldyn-2.72-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.72-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.72-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.72-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.72-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-2.72-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.72-2.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.72-2.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.lA0S0g + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.LWt4tr + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Smoldyn-2.72-SPECPARTS + rm -rf Smoldyn-2.72 Smoldyn-2.72.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild smoldyn-2.72-2.fc40.src.rpm Finish: build phase for smoldyn-2.72-2.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1701749674.331883/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1701749674.331883/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1701749674.331883/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.72-2.fc40.src.rpm) Config(child) 1 minutes 24 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "smoldyn-debugsource", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "x86_64" }, { "name": "smoldyn-debuginfo", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "x86_64" }, { "name": "smoldyn-libs", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "x86_64" }, { "name": "smoldyn-libs-debuginfo", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "x86_64" }, { "name": "smoldyn", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "src" }, { "name": "smoldyn-libs-devel", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "x86_64" }, { "name": "smoldyn-doc", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "noarch" }, { "name": "python3-smoldyn", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "x86_64" }, { "name": "smoldyn", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "x86_64" } ] } RPMResults finished