Warning: Permanently added '18.207.166.241' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8442249-fedora-40-aarch64 --chroot fedora-40-aarch64 Version: 1.2 PID: 8930 Logging PID: 8931 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8442249, 'buildroot_pkgs': [], 'chroot': 'fedora-40-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd5fdc1eb321b10b68578564dd788dc67f7af84ba', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:10/python-biopython', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-biopython', 'package_version': '1.84-4', 'project_dirname': 'openblas-0.3.23:pr:10', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-40-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/gui1ty', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/gui1ty', 'tags': [], 'task_id': '8442249-fedora-40-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:10/python-biopython /var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:10/python-biopython', '/var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython'... Running: git checkout d5fdc1eb321b10b68578564dd788dc67f7af84ba -- cmd: ['git', 'checkout', 'd5fdc1eb321b10b68578564dd788dc67f7af84ba', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython rc: 0 stdout: stderr: Note: switching to 'd5fdc1eb321b10b68578564dd788dc67f7af84ba'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d5fdc1e automatic import of python-biopython Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading biopython-1.84.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o biopython-1.84.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23:pr:10/python-biopython/biopython-1.84.tar.gz/md5/92e639d2f3627759f12f0d000131c24d/biopython-1.84.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 24.5M 100 24.5M 0 0 381M 0 --:--:-- --:--:-- --:--:-- 384M INFO: Reading stdout from command: md5sum biopython-1.84.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734979390.465506 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734979390.465506 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython/python-biopython.spec) Config(fedora-40-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-aarch64-bootstrap-1734979390.465506/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:40 INFO: Pulling image: registry.fedoraproject.org/fedora:40 INFO: Tagging container image as mock-bootstrap-750a5c51-bab2-4cfd-9cfc-07bb850cd851 INFO: Checking that d9320fe3de2d807274437919c3e4ad8a724bfbd16349083969359b5deb9590fb image matches host's architecture INFO: Copy content of container d9320fe3de2d807274437919c3e4ad8a724bfbd16349083969359b5deb9590fb to /var/lib/mock/fedora-40-aarch64-bootstrap-1734979390.465506/root INFO: mounting d9320fe3de2d807274437919c3e4ad8a724bfbd16349083969359b5deb9590fb with podman image mount INFO: image d9320fe3de2d807274437919c3e4ad8a724bfbd16349083969359b5deb9590fb as /var/lib/containers/storage/overlay/2912837ecf2839b80b3d3827494e4ca285e8e097b6caf25f9ca7fa1b0591ca42/merged INFO: umounting image d9320fe3de2d807274437919c3e4ad8a724bfbd16349083969359b5deb9590fb (/var/lib/containers/storage/overlay/2912837ecf2839b80b3d3827494e4ca285e8e097b6caf25f9ca7fa1b0591ca42/merged) with podman image umount INFO: Removing image mock-bootstrap-750a5c51-bab2-4cfd-9cfc-07bb850cd851 INFO: Using 'dnf4' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf4 detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 70 MB/s | 3.1 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 151 MB/s | 14 MB 00:00 fedora 34 MB/s | 19 MB 00:00 updates 43 MB/s | 11 MB 00:00 Last metadata expiration check: 0:00:01 ago on Mon Dec 23 18:43:22 2024. Dependencies resolved. ============================================================================================================== Package Arch Version Repository Size ============================================================================================================== Installing: dnf5 aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 709 k replacing dnf.noarch 4.22.0-1.fc40 replacing yum.noarch 4.22.0-1.fc40 dnf5-plugins aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 375 k Installing dependencies: fmt aarch64 11.0.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98 k libdnf5 aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M libdnf5-cli aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 313 k sdbus-cpp aarch64 1.5.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103 k Transaction Summary ============================================================================================================== Install 6 Packages Total download size: 2.6 M Downloading Packages: (1/6): fmt-11.0.2-2.fc42.aarch64.rpm 3.5 MB/s | 98 kB 00:00 (2/6): dnf5-plugins-5.2.8.1-2.fc42.aarch64.rpm 12 MB/s | 375 kB 00:00 (3/6): dnf5-5.2.8.1-2.fc42.aarch64.rpm 19 MB/s | 709 kB 00:00 (4/6): libdnf5-5.2.8.1-2.fc42.aarch64.rpm 97 MB/s | 1.0 MB 00:00 (5/6): libdnf5-cli-5.2.8.1-2.fc42.aarch64.rpm 23 MB/s | 313 kB 00:00 (6/6): sdbus-cpp-1.5.0-3.fc41.aarch64.rpm 13 MB/s | 103 kB 00:00 -------------------------------------------------------------------------------- Total 57 MB/s | 2.6 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Error: Transaction test error: file /etc/dnf/dnf.conf from install of libdnf5-5.2.8.1-2.fc42.aarch64 conflicts with file from package dnf-data-4.22.0-1.fc40.noarch WARNING: DNF4 command failed, retrying, attempt #2, sleeping 10s No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 77 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 186 kB/s | 3.5 kB 00:00 fedora 171 kB/s | 16 kB 00:00 updates 161 kB/s | 15 kB 00:00 Dependencies resolved. ============================================================================================================== Package Arch Version Repository Size ============================================================================================================== Installing: dnf5 aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 709 k replacing dnf.noarch 4.22.0-1.fc40 replacing yum.noarch 4.22.0-1.fc40 dnf5-plugins aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 375 k Installing dependencies: fmt aarch64 11.0.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98 k libdnf5 aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M libdnf5-cli aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 313 k sdbus-cpp aarch64 1.5.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103 k Transaction Summary ============================================================================================================== Install 6 Packages Total size: 2.6 M Downloading Packages: [SKIPPED] dnf5-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] dnf5-plugins-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] fmt-11.0.2-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] libdnf5-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] libdnf5-cli-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] sdbus-cpp-1.5.0-3.fc41.aarch64.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Error: Transaction test error: file /etc/dnf/dnf.conf from install of libdnf5-5.2.8.1-2.fc42.aarch64 conflicts with file from package dnf-data-4.22.0-1.fc40.noarch WARNING: DNF4 command failed, retrying, attempt #3, sleeping 10s No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 94 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 194 kB/s | 3.5 kB 00:00 fedora 60 kB/s | 16 kB 00:00 updates 268 kB/s | 15 kB 00:00 Dependencies resolved. ============================================================================================================== Package Arch Version Repository Size ============================================================================================================== Installing: dnf5 aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 709 k replacing dnf.noarch 4.22.0-1.fc40 replacing yum.noarch 4.22.0-1.fc40 dnf5-plugins aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 375 k Installing dependencies: fmt aarch64 11.0.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98 k libdnf5 aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M libdnf5-cli aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 313 k sdbus-cpp aarch64 1.5.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103 k Transaction Summary ============================================================================================================== Install 6 Packages Total size: 2.6 M Downloading Packages: [SKIPPED] dnf5-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] dnf5-plugins-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] fmt-11.0.2-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] libdnf5-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] libdnf5-cli-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] sdbus-cpp-1.5.0-3.fc41.aarch64.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Error: Transaction test error: file /etc/dnf/dnf.conf from install of libdnf5-5.2.8.1-2.fc42.aarch64 conflicts with file from package dnf-data-4.22.0-1.fc40.noarch ERROR: Exception(/var/lib/copr-rpmbuild/workspace/workdir-axbsv7ub/python-biopython/python-biopython.spec) Config(fedora-40-aarch64) 0 minutes 40 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 127aa55c513f4cecb593c09ac6d9266e -D /var/lib/mock/fedora-40-aarch64-bootstrap-1734979390.465506/root -a --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/var/lib/mock/fedora-40-aarch64-bootstrap-1734979390.465506/root/installation-homedir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --setenv=LC_MESSAGES=C.UTF-8 --setenv=SYSTEMD_NSPAWN_TMPFS_TMP=0 --setenv=SYSTEMD_SECCOMP=0 --resolv-conf=off /usr/bin/dnf-3 --releasever 40 --setopt=deltarpm=False --setopt=allow_vendor_change=yes --allowerasing --disableplugin=local --disableplugin=spacewalk --disableplugin=versionlock install dnf5 dnf5-plugins --setopt=tsflags=nocontexts --setopt=tsflags=nocontexts --setopt=tsflags=nocontexts No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 94 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 194 kB/s | 3.5 kB 00:00 fedora 60 kB/s | 16 kB 00:00 updates 268 kB/s | 15 kB 00:00 Dependencies resolved. ============================================================================================================== Package Arch Version Repository Size ============================================================================================================== Installing: dnf5 aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 709 k replacing dnf.noarch 4.22.0-1.fc40 replacing yum.noarch 4.22.0-1.fc40 dnf5-plugins aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 375 k Installing dependencies: fmt aarch64 11.0.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98 k libdnf5 aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M libdnf5-cli aarch64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 313 k sdbus-cpp aarch64 1.5.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103 k Transaction Summary ============================================================================================================== Install 6 Packages Total size: 2.6 M Downloading Packages: [SKIPPED] dnf5-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] dnf5-plugins-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] fmt-11.0.2-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] libdnf5-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] libdnf5-cli-5.2.8.1-2.fc42.aarch64.rpm: Already downloaded [SKIPPED] sdbus-cpp-1.5.0-3.fc41.aarch64.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Error: Transaction test error: file /etc/dnf/dnf.conf from install of libdnf5-5.2.8.1-2.fc42.aarch64 conflicts with file from package dnf-data-4.22.0-1.fc40.noarch Copr build error: Build failed