Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c158' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8442249-fedora-40-x86_64 --chroot fedora-40-x86_64 Version: 1.2 PID: 18548 Logging PID: 18549 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8442249, 'buildroot_pkgs': [], 'chroot': 'fedora-40-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd5fdc1eb321b10b68578564dd788dc67f7af84ba', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:10/python-biopython', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-biopython', 'package_version': '1.84-4', 'project_dirname': 'openblas-0.3.23:pr:10', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-40-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/gui1ty', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/gui1ty', 'tags': [], 'task_id': '8442249-fedora-40-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:10/python-biopython /var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:10/python-biopython', '/var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython'... Running: git checkout d5fdc1eb321b10b68578564dd788dc67f7af84ba -- cmd: ['git', 'checkout', 'd5fdc1eb321b10b68578564dd788dc67f7af84ba', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython rc: 0 stdout: stderr: Note: switching to 'd5fdc1eb321b10b68578564dd788dc67f7af84ba'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d5fdc1e automatic import of python-biopython Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading biopython-1.84.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o biopython-1.84.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23:pr:10/python-biopython/biopython-1.84.tar.gz/md5/92e639d2f3627759f12f0d000131c24d/biopython-1.84.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 24.5M 100 24.5M 0 0 26.0M 0 --:--:-- --:--:-- --:--:-- 26.0M INFO: Reading stdout from command: md5sum biopython-1.84.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734980640.696983 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython/python-biopython.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734980640.696983 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython/python-biopython.spec) Config(fedora-40-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-bootstrap-1734980640.696983/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:40 INFO: Pulling image: registry.fedoraproject.org/fedora:40 INFO: Tagging container image as mock-bootstrap-1f235b06-3f77-4935-89ff-9c29b110105b INFO: Checking that 8efbdaefad5ef42cb0cd0293958256c4ba95bc6958f4fba9352b173aa0cfe224 image matches host's architecture INFO: Copy content of container 8efbdaefad5ef42cb0cd0293958256c4ba95bc6958f4fba9352b173aa0cfe224 to /var/lib/mock/fedora-40-x86_64-bootstrap-1734980640.696983/root INFO: mounting 8efbdaefad5ef42cb0cd0293958256c4ba95bc6958f4fba9352b173aa0cfe224 with podman image mount INFO: image 8efbdaefad5ef42cb0cd0293958256c4ba95bc6958f4fba9352b173aa0cfe224 as /var/lib/containers/storage/overlay/067ae9a6353e2abae7a189dd1b77bca228e629705d2c2848a66122c40e5bd1b7/merged INFO: umounting image 8efbdaefad5ef42cb0cd0293958256c4ba95bc6958f4fba9352b173aa0cfe224 (/var/lib/containers/storage/overlay/067ae9a6353e2abae7a189dd1b77bca228e629705d2c2848a66122c40e5bd1b7/merged) with podman image umount INFO: Removing image mock-bootstrap-1f235b06-3f77-4935-89ff-9c29b110105b INFO: Using 'dnf4' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf4 detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 22 MB/s | 3.2 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 48 MB/s | 14 MB 00:00 fedora 19 MB/s | 20 MB 00:01 updates 7.9 MB/s | 12 MB 00:01 Last metadata expiration check: 0:00:01 ago on Mon Dec 23 19:04:13 2024. Dependencies resolved. ============================================================================================================= Package Arch Version Repository Size ============================================================================================================= Installing: dnf5 x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 754 k replacing dnf.noarch 4.22.0-1.fc40 replacing yum.noarch 4.22.0-1.fc40 dnf5-plugins x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 399 k Installing dependencies: fmt x86_64 11.0.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k libdnf5 x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M libdnf5-cli x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 330 k sdbus-cpp x86_64 1.5.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k Transaction Summary ============================================================================================================= Install 6 Packages Total download size: 2.8 M Downloading Packages: (1/6): fmt-11.0.2-2.fc42.x86_64.rpm 1.2 MB/s | 100 kB 00:00 (2/6): dnf5-5.2.8.1-2.fc42.x86_64.rpm 7.8 MB/s | 754 kB 00:00 (3/6): dnf5-plugins-5.2.8.1-2.fc42.x86_64.rpm 4.0 MB/s | 399 kB 00:00 (4/6): sdbus-cpp-1.5.0-3.fc41.x86_64.rpm 5.2 MB/s | 113 kB 00:00 (5/6): libdnf5-cli-5.2.8.1-2.fc42.x86_64.rpm 13 MB/s | 330 kB 00:00 (6/6): libdnf5-5.2.8.1-2.fc42.x86_64.rpm 24 MB/s | 1.1 MB 00:00 -------------------------------------------------------------------------------- Total 21 MB/s | 2.8 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Error: Transaction test error: file /etc/dnf/dnf.conf from install of libdnf5-5.2.8.1-2.fc42.x86_64 conflicts with file from package dnf-data-4.22.0-1.fc40.noarch WARNING: DNF4 command failed, retrying, attempt #2, sleeping 10s No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 34 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 46 kB/s | 3.5 kB 00:00 fedora 738 kB/s | 31 kB 00:00 updates 846 kB/s | 29 kB 00:00 Dependencies resolved. ============================================================================================================= Package Arch Version Repository Size ============================================================================================================= Installing: dnf5 x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 754 k replacing dnf.noarch 4.22.0-1.fc40 replacing yum.noarch 4.22.0-1.fc40 dnf5-plugins x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 399 k Installing dependencies: fmt x86_64 11.0.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k libdnf5 x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M libdnf5-cli x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 330 k sdbus-cpp x86_64 1.5.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k Transaction Summary ============================================================================================================= Install 6 Packages Total size: 2.8 M Downloading Packages: [SKIPPED] dnf5-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] dnf5-plugins-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] fmt-11.0.2-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] libdnf5-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] libdnf5-cli-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] sdbus-cpp-1.5.0-3.fc41.x86_64.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Error: Transaction test error: file /etc/dnf/dnf.conf from install of libdnf5-5.2.8.1-2.fc42.x86_64 conflicts with file from package dnf-data-4.22.0-1.fc40.noarch WARNING: DNF4 command failed, retrying, attempt #3, sleeping 10s No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 43 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 65 kB/s | 3.5 kB 00:00 fedora 1.3 MB/s | 31 kB 00:00 updates 1.1 MB/s | 29 kB 00:00 Dependencies resolved. ============================================================================================================= Package Arch Version Repository Size ============================================================================================================= Installing: dnf5 x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 754 k replacing dnf.noarch 4.22.0-1.fc40 replacing yum.noarch 4.22.0-1.fc40 dnf5-plugins x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 399 k Installing dependencies: fmt x86_64 11.0.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k libdnf5 x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M libdnf5-cli x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 330 k sdbus-cpp x86_64 1.5.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k Transaction Summary ============================================================================================================= Install 6 Packages Total size: 2.8 M Downloading Packages: [SKIPPED] dnf5-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] dnf5-plugins-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] fmt-11.0.2-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] libdnf5-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] libdnf5-cli-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] sdbus-cpp-1.5.0-3.fc41.x86_64.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Error: Transaction test error: file /etc/dnf/dnf.conf from install of libdnf5-5.2.8.1-2.fc42.x86_64 conflicts with file from package dnf-data-4.22.0-1.fc40.noarch ERROR: Exception(/var/lib/copr-rpmbuild/workspace/workdir-_ex2pkyz/python-biopython/python-biopython.spec) Config(fedora-40-x86_64) 0 minutes 40 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 344cb5c3ba4d4b69b892aaaa1e41651f -D /var/lib/mock/fedora-40-x86_64-bootstrap-1734980640.696983/root -a --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/var/lib/mock/fedora-40-x86_64-bootstrap-1734980640.696983/root/installation-homedir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --setenv=LC_MESSAGES=C.UTF-8 --setenv=SYSTEMD_NSPAWN_TMPFS_TMP=0 --setenv=SYSTEMD_SECCOMP=0 --resolv-conf=off /usr/bin/dnf-3 --releasever 40 --setopt=deltarpm=False --setopt=allow_vendor_change=yes --allowerasing --disableplugin=local --disableplugin=spacewalk --disableplugin=versionlock install dnf5 dnf5-plugins --setopt=tsflags=nocontexts --setopt=tsflags=nocontexts --setopt=tsflags=nocontexts No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 43 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 65 kB/s | 3.5 kB 00:00 fedora 1.3 MB/s | 31 kB 00:00 updates 1.1 MB/s | 29 kB 00:00 Dependencies resolved. ============================================================================================================= Package Arch Version Repository Size ============================================================================================================= Installing: dnf5 x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 754 k replacing dnf.noarch 4.22.0-1.fc40 replacing yum.noarch 4.22.0-1.fc40 dnf5-plugins x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 399 k Installing dependencies: fmt x86_64 11.0.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k libdnf5 x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M libdnf5-cli x86_64 5.2.8.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 330 k sdbus-cpp x86_64 1.5.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k Transaction Summary ============================================================================================================= Install 6 Packages Total size: 2.8 M Downloading Packages: [SKIPPED] dnf5-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] dnf5-plugins-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] fmt-11.0.2-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] libdnf5-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] libdnf5-cli-5.2.8.1-2.fc42.x86_64.rpm: Already downloaded [SKIPPED] sdbus-cpp-1.5.0-3.fc41.x86_64.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test Error: Transaction test error: file /etc/dnf/dnf.conf from install of libdnf5-5.2.8.1-2.fc42.x86_64 conflicts with file from package dnf-data-4.22.0-1.fc40.noarch Copr build error: Build failed