Warning: Permanently added '44.201.136.143' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7989576-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.73 PID: 12328 Logging PID: 12329 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7989576, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ee255563984fcb72a27985f21524dd27d5aa80ad', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:3/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-7', 'project_dirname': 'openblas-0.3.23:pr:3', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/msuchy', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/msuchy', 'tags': [], 'task_id': '7989576-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:3/ProDy /var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23:pr:3/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy'... Running: git checkout ee255563984fcb72a27985f21524dd27d5aa80ad -- cmd: ['git', 'checkout', 'ee255563984fcb72a27985f21524dd27d5aa80ad', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy rc: 0 stdout: stderr: Note: switching to 'ee255563984fcb72a27985f21524dd27d5aa80ad'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ee25556 automatic import of ProDy Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23:pr:3/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 25.9M 100 25.9M 0 0 384M 0 --:--:-- --:--:-- --:--:-- 387M INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633489.452927 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633489.452927 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy/ProDy.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1725633489.452927/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1725633489.452927/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/d3c513cc9c079daa4915dff871501a2918b9936f70c4e817aef7ba20374f3661/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/d3c513cc9c079daa4915dff871501a2918b9936f70c4e817aef7ba20374f3661/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725633489.452927/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 10.0 MiB/s | 21.7 MiB | 00m02s Copr repository 100% | 76.4 MiB/s | 3.4 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 68.8 MiB/s | 14.2 MiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB which x86_64 2.21-42.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.2 KiB xz x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Installing dependencies: add-determinism x86_64 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB alternatives x86_64 1.30-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66.3 KiB ansible-srpm-macros noarch 1-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 331.3 KiB authselect x86_64 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 153.5 KiB authselect-libs x86_64 1.5.0-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.3 KiB basesystem noarch 11-21.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils x86_64 2.43.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27.5 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.7 KiB ca-certificates noarch 2024.2.68_v8.0.302-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common x86_64 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib x86_64 2.9.11-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.9 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB curl x86_64 8.9.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 796.2 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB debugedit x86_64 5.0-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 199.3 KiB dwz x86_64 0.15-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290.9 KiB ed x86_64 1.20.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.9 KiB efi-srpm-macros noarch 5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB elfutils-debuginfod-client x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs x86_64 0.191-8.fc41 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6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap x86_64 2.6.8-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 644.2 KiB openssl-libs x86_64 1:3.2.2-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 MiB p11-kit x86_64 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB p11-kit-trust x86_64 0.25.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 391.4 KiB package-notes-srpm-macros noarch 0.5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam x86_64 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB pam-libs x86_64 1.6.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493.1 KiB rpm x86_64 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB rpm-build-libs x86_64 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.7 KiB rpm-libs x86_64 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 721.9 KiB rpm-sequoia x86_64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB systemd-libs x86_64 256.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 180 MiB will be used (install 180 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-19.fc41.x86_64 100% | 1.9 MiB/s | 52.5 KiB | 00m00s [ 2/153] coreutils-0:9.5-9.fc42.x86_64 100% | 35.1 MiB/s | 1.1 MiB | 00m00s [ 3/153] cpio-0:2.15-2.fc41.x86_64 100% | 23.2 MiB/s | 285.2 KiB | 00m00s [ 4/153] diffutils-0:3.10-8.fc41.x86_6 100% | 35.3 MiB/s | 397.2 KiB | 00m00s [ 5/153] fedora-release-common-0:42-0. 100% | 5.6 MiB/s | 23.0 KiB | 00m00s [ 6/153] gawk-0:5.3.0-4.fc41.x86_64 100% | 88.3 MiB/s | 1.1 MiB | 00m00s [ 7/153] findutils-1:4.10.0-4.fc41.x86 100% | 40.5 MiB/s | 539.8 KiB | 00m00s [ 8/153] glibc-minimal-langpack-0:2.40 100% | 16.9 MiB/s | 120.9 KiB | 00m00s [ 9/153] grep-0:3.11-9.fc41.x86_64 100% | 35.4 MiB/s | 289.7 KiB | 00m00s [ 10/153] gzip-0:1.13-2.fc41.x86_64 100% | 20.0 MiB/s | 164.1 KiB | 00m00s [ 11/153] info-0:7.1-3.fc41.x86_64 100% | 19.8 MiB/s | 182.5 KiB | 00m00s [ 12/153] redhat-rpm-config-0:294-1.fc4 100% | 18.4 MiB/s | 75.5 KiB | 00m00s [ 13/153] patch-0:2.7.6-25.fc41.x86_64 100% | 18.3 MiB/s | 131.0 KiB | 00m00s [ 14/153] bash-0:5.2.32-2.fc42.x86_64 100% | 21.0 MiB/s | 1.8 MiB | 00m00s [ 15/153] rpm-build-0:4.19.93-1.fc42.x8 100% | 12.3 MiB/s | 75.8 KiB | 00m00s [ 16/153] sed-0:4.9-3.fc41.x86_64 100% | 30.2 MiB/s | 309.3 KiB | 00m00s [ 17/153] tar-2:1.35-4.fc41.x86_64 100% | 75.6 MiB/s | 852.1 KiB | 00m00s [ 18/153] unzip-0:6.0-64.fc41.x86_64 100% | 22.6 MiB/s | 184.9 KiB | 00m00s [ 19/153] which-0:2.21-42.fc41.x86_64 100% | 4.5 MiB/s | 41.6 KiB | 00m00s [ 20/153] shadow-utils-2:4.15.1-9.fc41. 100% | 42.1 MiB/s | 1.3 MiB | 00m00s [ 21/153] xz-1:5.6.2-2.fc41.x86_64 100% | 44.7 MiB/s | 457.8 KiB | 00m00s [ 22/153] util-linux-0:2.40.2-8.fc42.x8 100% | 48.6 MiB/s | 1.1 MiB | 00m00s [ 23/153] glibc-common-0:2.40.9000-1.fc 100% | 56.5 MiB/s | 404.7 KiB | 00m00s [ 24/153] xz-libs-1:5.6.2-2.fc41.x86_64 100% | 9.9 MiB/s | 111.8 KiB | 00m00s [ 25/153] glibc-gconv-extra-0:2.40.9000 100% | 87.2 MiB/s | 1.7 MiB | 00m00s [ 26/153] audit-libs-0:4.0.2-1.fc41.x86 100% | 20.5 MiB/s | 126.2 KiB | 00m00s [ 27/153] authselect-libs-0:1.5.0-7.fc4 100% | 28.6 MiB/s | 204.9 KiB | 00m00s [ 28/153] libblkid-0:2.40.2-8.fc42.x86_ 100% | 24.4 MiB/s | 125.0 KiB | 00m00s [ 29/153] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 5.3 MiB/s | 32.6 KiB | 00m00s [ 30/153] libfdisk-0:2.40.2-8.fc42.x86_ 100% | 26.0 MiB/s | 159.6 KiB | 00m00s [ 31/153] glibc-0:2.40.9000-1.fc42.x86_ 100% | 47.6 MiB/s | 2.2 MiB | 00m00s [ 32/153] libmount-0:2.40.2-8.fc42.x86_ 100% | 21.8 MiB/s | 156.1 KiB | 00m00s [ 33/153] libselinux-0:3.7-5.fc41.x86_6 100% | 17.1 MiB/s | 87.8 KiB | 00m00s [ 34/153] libuuid-0:2.40.2-8.fc42.x86_6 100% | 9.4 MiB/s | 29.0 KiB | 00m00s [ 35/153] libsmartcols-0:2.40.2-8.fc42. 100% | 16.4 MiB/s | 83.9 KiB | 00m00s [ 36/153] ncurses-libs-0:6.5-2.20240629 100% | 29.6 MiB/s | 334.0 KiB | 00m00s [ 37/153] pam-libs-0:1.6.1-6.fc42.x86_6 100% | 9.3 MiB/s | 57.2 KiB | 00m00s [ 38/153] pam-0:1.6.1-6.fc42.x86_64 100% | 46.0 MiB/s | 518.0 KiB | 00m00s [ 39/153] readline-0:8.2-11.fc42.x86_64 100% | 14.9 MiB/s | 213.4 KiB | 00m00s [ 40/153] util-linux-core-0:2.40.2-8.fc 100% | 46.3 MiB/s | 521.5 KiB | 00m00s [ 41/153] systemd-libs-0:256.5-1.fc42.x 100% | 44.6 MiB/s | 730.4 KiB | 00m00s [ 42/153] zlib-ng-compat-0:2.1.7-2.fc41 100% | 10.9 MiB/s | 77.8 KiB | 00m00s [ 43/153] libacl-0:2.3.2-2.fc41.x86_64 100% | 4.0 MiB/s | 24.5 KiB | 00m00s [ 44/153] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 5.7 MiB/s | 41.1 KiB | 00m00s [ 45/153] libcap-0:2.70-4.fc41.x86_64 100% | 12.1 MiB/s | 86.7 KiB | 00m00s [ 46/153] libattr-0:2.5.2-4.fc41.x86_64 100% | 2.5 MiB/s | 18.2 KiB | 00m00s [ 47/153] libgcc-0:14.2.1-1.fc42.x86_64 100% | 12.9 MiB/s | 132.3 KiB | 00m00s [ 48/153] libeconf-0:0.6.2-3.fc41.x86_6 100% | 4.5 MiB/s | 32.2 KiB | 00m00s [ 49/153] libsemanage-0:3.7-2.fc41.x86_ 100% | 14.2 MiB/s | 116.3 KiB | 00m00s [ 50/153] libxcrypt-0:4.4.36-7.fc41.x86 100% | 19.3 MiB/s | 118.5 KiB | 00m00s [ 51/153] setup-0:2.15.0-5.fc41.noarch 100% | 36.2 MiB/s | 148.3 KiB | 00m00s [ 52/153] debugedit-0:5.0-17.fc41.x86_6 100% | 9.8 MiB/s | 80.1 KiB | 00m00s [ 53/153] elfutils-0:0.191-8.fc41.x86_6 100% | 36.6 MiB/s | 524.4 KiB | 00m00s [ 54/153] elfutils-libelf-0:0.191-8.fc4 100% | 18.4 MiB/s | 207.6 KiB | 00m00s [ 55/153] file-0:5.45-7.fc41.x86_64 100% | 8.0 MiB/s | 49.1 KiB | 00m00s [ 56/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 2.0 MiB/s | 10.0 KiB | 00m00s [ 57/153] libarchive-0:3.7.4-3.fc41.x86 100% | 40.0 MiB/s | 409.2 KiB | 00m00s [ 58/153] popt-0:1.19-7.fc41.x86_64 100% | 9.7 MiB/s | 59.3 KiB | 00m00s [ 59/153] rpm-0:4.19.93-1.fc42.x86_64 100% | 85.0 MiB/s | 522.2 KiB | 00m00s [ 60/153] rpm-build-libs-0:4.19.93-1.fc 100% | 24.2 MiB/s | 99.2 KiB | 00m00s [ 61/153] rpm-libs-0:4.19.93-1.fc42.x86 100% | 60.5 MiB/s | 309.6 KiB | 00m00s [ 62/153] zstd-0:1.5.6-2.fc41.x86_64 100% | 52.2 MiB/s | 481.5 KiB | 00m00s [ 63/153] curl-0:8.9.1-3.fc42.x86_64 100% | 38.5 MiB/s | 315.3 KiB | 00m00s [ 64/153] ansible-srpm-macros-0:1-16.fc 100% | 5.1 MiB/s | 20.8 KiB | 00m00s [ 65/153] build-reproducibility-srpm-ma 100% | 2.6 MiB/s | 10.6 KiB | 00m00s [ 66/153] efi-srpm-macros-0:5-12.fc41.n 100% | 5.5 MiB/s | 22.4 KiB | 00m00s [ 67/153] dwz-0:0.15-7.fc41.x86_64 100% | 19.3 MiB/s | 138.0 KiB | 00m00s [ 68/153] fonts-srpm-macros-1:2.0.5-17. 100% | 6.6 MiB/s | 27.0 KiB | 00m00s [ 69/153] forge-srpm-macros-0:0.3.2-1.f 100% | 4.8 MiB/s | 19.7 KiB | 00m00s [ 70/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 2.6 MiB/s | 8.0 KiB | 00m00s [ 71/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 2.2 MiB/s | 9.1 KiB | 00m00s [ 72/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 2.9 MiB/s | 9.0 KiB | 00m00s [ 73/153] kernel-srpm-macros-0:1.0-24.f 100% | 2.4 MiB/s | 9.9 KiB | 00m00s [ 74/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 5.5 MiB/s | 28.0 KiB | 00m00s [ 75/153] lua-srpm-macros-0:1-14.fc41.n 100% | 2.9 MiB/s | 8.9 KiB | 00m00s [ 76/153] ocaml-srpm-macros-0:10-3.fc41 100% | 3.0 MiB/s | 9.2 KiB | 00m00s [ 77/153] openblas-srpm-macros-0:2-18.f 100% | 1.9 MiB/s | 7.7 KiB | 00m00s [ 78/153] package-notes-srpm-macros-0:0 100% | 2.4 MiB/s | 9.8 KiB | 00m00s [ 79/153] perl-srpm-macros-0:1-56.fc41. 100% | 2.1 MiB/s | 8.5 KiB | 00m00s [ 80/153] pyproject-srpm-macros-0:1.14. 100% | 3.3 MiB/s | 13.4 KiB | 00m00s [ 81/153] python-srpm-macros-0:3.13-3.f 100% | 7.7 MiB/s | 23.7 KiB | 00m00s [ 82/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 2.9 MiB/s | 8.9 KiB | 00m00s [ 83/153] rust-srpm-macros-0:26.3-3.fc4 100% | 3.9 MiB/s | 12.1 KiB | 00m00s [ 84/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 3.0 MiB/s | 9.1 KiB | 00m00s [ 85/153] binutils-0:2.43.1-1.fc42.x86_ 100% | 60.6 MiB/s | 6.4 MiB | 00m00s [ 86/153] zig-srpm-macros-0:1-3.fc41.no 100% | 902.6 KiB/s | 8.1 KiB | 00m00s [ 87/153] pkgconf-0:2.3.0-1.fc42.x86_64 100% | 11.0 MiB/s | 45.2 KiB | 00m00s [ 88/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 3.5 MiB/s | 14.3 KiB | 00m00s [ 89/153] zip-0:3.0-41.fc41.x86_64 100% | 18.5 MiB/s | 264.8 KiB | 00m00s [ 90/153] libpkgconf-0:2.3.0-1.fc42.x86 100% | 9.4 MiB/s | 38.5 KiB | 00m00s [ 91/153] ed-0:1.20.2-2.fc41.x86_64 100% | 13.3 MiB/s | 81.8 KiB | 00m00s [ 92/153] authselect-0:1.5.0-7.fc41.x86 100% | 19.7 MiB/s | 141.2 KiB | 00m00s [ 93/153] gdbm-1:1.23-7.fc41.x86_64 100% | 24.0 MiB/s | 147.2 KiB | 00m00s [ 94/153] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 7.9 MiB/s | 56.3 KiB | 00m00s [ 95/153] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 4.1 MiB/s | 29.6 KiB | 00m00s [ 96/153] libpwquality-0:1.4.5-11.fc41. 100% | 17.6 MiB/s | 108.2 KiB | 00m00s [ 97/153] libtirpc-0:1.3.5-0.fc41.x86_6 100% | 15.3 MiB/s | 94.2 KiB | 00m00s [ 98/153] crypto-policies-0:20240828-1. 100% | 9.7 MiB/s | 69.9 KiB | 00m00s [ 99/153] ca-certificates-0:2024.2.68_v 100% | 70.7 MiB/s | 868.2 KiB | 00m00s [100/153] ncurses-base-0:6.5-2.20240629 100% | 15.6 MiB/s | 63.8 KiB | 00m00s [101/153] libcom_err-0:1.47.1-3.fc41.x8 100% | 5.2 MiB/s | 26.4 KiB | 00m00s [102/153] krb5-libs-0:1.21.3-2.fc41.x86 100% | 66.9 MiB/s | 753.3 KiB | 00m00s [103/153] libsepol-0:3.7-2.fc41.x86_64 100% | 47.7 MiB/s | 342.2 KiB | 00m00s [104/153] pcre2-0:10.44-1.fc41.1.x86_64 100% | 33.9 MiB/s | 243.1 KiB | 00m00s [105/153] openssl-libs-1:3.2.2-5.fc41.x 100% | 60.8 MiB/s | 2.3 MiB | 00m00s [106/153] cracklib-0:2.9.11-6.fc41.x86_ 100% | 10.0 MiB/s | 81.7 KiB | 00m00s [107/153] libxml2-0:2.12.8-2.fc41.x86_6 100% | 61.0 MiB/s | 687.3 KiB | 00m00s [108/153] lz4-libs-0:1.10.0-1.fc41.x86_ 100% | 13.8 MiB/s | 70.7 KiB | 00m00s [109/153] libzstd-0:1.5.6-2.fc41.x86_64 100% | 33.7 MiB/s | 310.3 KiB | 00m00s [110/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 6.2 MiB/s | 31.6 KiB | 00m00s [111/153] basesystem-0:11-21.fc41.noarc 100% | 2.4 MiB/s | 7.4 KiB | 00m00s [112/153] libverto-0:0.3.2-9.fc41.x86_6 100% | 2.9 MiB/s | 20.7 KiB | 00m00s [113/153] mpfr-0:4.2.1-5.fc41.x86_64 100% | 42.3 MiB/s | 346.3 KiB | 00m00s [114/153] filesystem-0:3.18-23.fc41.x86 100% | 97.3 MiB/s | 1.1 MiB | 00m00s [115/153] fedora-repos-0:42-0.1.noarch 100% | 2.2 MiB/s | 9.2 KiB | 00m00s [116/153] elfutils-debuginfod-client-0: 100% | 9.1 MiB/s | 37.2 KiB | 00m00s [117/153] file-libs-0:5.45-7.fc41.x86_6 100% | 49.6 MiB/s | 762.0 KiB | 00m00s [118/153] elfutils-libs-0:0.191-8.fc41. 100% | 41.9 MiB/s | 257.5 KiB | 00m00s [119/153] libstdc++-0:14.2.1-1.fc42.x86 100% | 123.7 MiB/s | 886.7 KiB | 00m00s [120/153] p11-kit-0:0.25.5-3.fc41.x86_6 100% | 31.1 MiB/s | 477.3 KiB | 00m00s [121/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 9.2 MiB/s | 132.1 KiB | 00m00s [122/153] alternatives-0:1.30-1.fc41.x8 100% | 5.2 MiB/s | 42.5 KiB | 00m00s [123/153] add-determinism-0:0.3.6-1.fc4 100% | 55.5 MiB/s | 851.8 KiB | 00m00s [124/153] jansson-0:2.13.1-10.fc41.x86_ 100% | 7.2 MiB/s | 44.4 KiB | 00m00s [125/153] coreutils-common-0:9.5-9.fc42 100% | 53.8 MiB/s | 2.1 MiB | 00m00s [126/153] lua-libs-0:5.4.6-6.fc41.x86_6 100% | 16.1 MiB/s | 132.0 KiB | 00m00s [127/153] rpm-sequoia-0:1.7.0-2.fc41.x8 100% | 67.0 MiB/s | 892.5 KiB | 00m00s [128/153] libgomp-0:14.2.1-1.fc42.x86_6 100% | 38.3 MiB/s | 353.0 KiB | 00m00s [129/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 24.4 MiB/s | 149.9 KiB | 00m00s [130/153] sqlite-libs-0:3.46.0-4.fc41.x 100% | 40.9 MiB/s | 712.4 KiB | 00m00s [131/153] libtasn1-0:4.19.0-9.fc41.x86_ 100% | 14.5 MiB/s | 74.2 KiB | 00m00s [132/153] libffi-0:3.4.6-3.fc42.x86_64 100% | 7.8 MiB/s | 40.0 KiB | 00m00s [133/153] fedora-gpg-keys-0:42-0.1.noar 100% | 30.1 MiB/s | 123.3 KiB | 00m00s [134/153] fedora-repos-rawhide-0:42-0.1 100% | 2.1 MiB/s | 8.7 KiB | 00m00s [135/153] elfutils-default-yama-scope-0 100% | 3.0 MiB/s | 12.3 KiB | 00m00s [136/153] fedora-release-0:42-0.3.noarc 100% | 2.4 MiB/s | 12.2 KiB | 00m00s [137/153] fedora-release-identity-basic 100% | 2.5 MiB/s | 13.0 KiB | 00m00s [138/153] gdb-minimal-0:15.1-1.fc42.x86 100% | 253.7 MiB/s | 4.3 MiB | 00m00s [139/153] gmp-1:6.3.0-2.fc41.x86_64 100% | 20.7 MiB/s | 318.0 KiB | 00m00s [140/153] libcurl-0:8.9.1-3.fc42.x86_64 100% | 35.4 MiB/s | 362.0 KiB | 00m00s [141/153] xxhash-libs-0:0.8.2-3.fc41.x8 100% | 6.0 MiB/s | 37.1 KiB | 00m00s [142/153] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 33.2 MiB/s | 340.5 KiB | 00m00s [143/153] libidn2-0:2.3.7-2.fc41.x86_64 100% | 12.2 MiB/s | 112.6 KiB | 00m00s [144/153] libnghttp2-0:1.63.0-1.fc42.x8 100% | 9.4 MiB/s | 76.7 KiB | 00m00s [145/153] libpsl-0:0.21.5-4.fc41.x86_64 100% | 7.8 MiB/s | 64.1 KiB | 00m00s [146/153] libssh-0:0.11.1-1.fc42.x86_64 100% | 28.3 MiB/s | 231.9 KiB | 00m00s [147/153] openldap-0:2.6.8-5.fc41.x86_6 100% | 35.7 MiB/s | 255.6 KiB | 00m00s [148/153] libevent-0:2.1.12-14.fc41.x86 100% | 31.4 MiB/s | 257.5 KiB | 00m00s [149/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 5.8 MiB/s | 35.6 KiB | 00m00s [150/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 55.4 MiB/s | 794.9 KiB | 00m00s [151/153] libssh-config-0:0.11.1-1.fc42 100% | 2.3 MiB/s | 9.4 KiB | 00m00s [152/153] libunistring-0:1.1-8.fc41.x86 100% | 48.4 MiB/s | 544.8 KiB | 00m00s [153/153] publicsuffix-list-dafsa-0:202 100% | 8.1 MiB/s | 58.3 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 97.6 MiB/s | 52.6 MiB | 00m01s Running transaction [ 1/155] Verify package files 100% | 845.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 [ 2/155] Prepare transaction 100% | 4.0 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-1. 100% | 269.8 MiB/s | 276.3 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc42.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc42.x86_64 [ 4/155] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 5/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 56.1 MiB/s | 172.2 KiB | 00m00s [ 8/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 23.1 MiB/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 64.5 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 13/155] Installing filesystem-0:3.18- 100% | 3.3 MiB/s | 212.5 KiB | 00m00s [ 14/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/155] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s [ 16/155] Installing coreutils-common-0 100% | 399.7 MiB/s | 11.2 MiB | 00m00s [ 17/155] Installing ncurses-base-0:6.5 100% | 85.9 MiB/s | 351.7 KiB | 00m00s [ 18/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 19/155] Installing ncurses-libs-0:6.5 100% | 239.7 MiB/s | 981.8 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40.9000-1.fc42.x86_64 >>> Stop pre-install scriptlet: glibc-0:2.40.9000-1.fc42.x86_64 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 20/155] Installing glibc-0:2.40.9000- 100% | 231.2 MiB/s | 6.7 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40.9000-1.fc42.x86_64 >>> Stop post-install scriptlet: glibc-0:2.40.9000-1.fc42.x86_64 [ 21/155] Installing bash-0:5.2.32-2.fc 100% | 389.0 MiB/s | 8.2 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.x86_64 >>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.x86_64 [ 22/155] Installing glibc-common-0:2.4 100% | 174.5 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 23/155] Installing glibc-gconv-extra- 100% | 234.7 MiB/s | 8.2 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.x86_64 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40.9000-1.fc42.x86_64 [ 24/155] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.8 KiB | 00m00s [ 25/155] Installing xz-libs-1:5.6.2-2. 100% | 210.4 MiB/s | 215.5 KiB | 00m00s [ 26/155] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 81.8 KiB | 00m00s [ 27/155] Installing libuuid-0:2.40.2-8 100% | 0.0 B/s | 42.5 KiB | 00m00s [ 28/155] Installing readline-0:8.2-11. 100% | 241.8 MiB/s | 495.3 KiB | 00m00s [ 29/155] Installing popt-0:1.19-7.fc41 100% | 70.1 MiB/s | 143.5 KiB | 00m00s [ 30/155] Installing libblkid-0:2.40.2- 100% | 257.5 MiB/s | 263.6 KiB | 00m00s [ 31/155] Installing libattr-0:2.5.2-4. 100% | 0.0 B/s | 29.5 KiB | 00m00s [ 32/155] Installing libacl-0:2.3.2-2.f 100% | 0.0 B/s | 40.7 KiB | 00m00s [ 33/155] Installing libxcrypt-0:4.4.36 100% | 263.2 MiB/s | 269.5 KiB | 00m00s [ 34/155] Installing libzstd-0:1.5.6-2. 100% | 389.3 MiB/s | 797.2 KiB | 00m00s [ 35/155] Installing elfutils-libelf-0: 100% | 389.7 MiB/s | 1.2 MiB | 00m00s [ 36/155] Installing libstdc++-0:14.2.1 100% | 346.3 MiB/s | 2.8 MiB | 00m00s [ 37/155] Installing gmp-1:6.3.0-2.fc41 100% | 397.3 MiB/s | 813.7 KiB | 00m00s [ 38/155] Installing libeconf-0:0.6.2-3 100% | 0.0 B/s | 59.7 KiB | 00m00s [ 39/155] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB | 00m00s [ 40/155] Installing mpfr-0:4.2.1-5.fc4 100% | 271.4 MiB/s | 833.7 KiB | 00m00s [ 41/155] Installing gawk-0:5.3.0-4.fc4 100% | 288.7 MiB/s | 1.7 MiB | 00m00s [ 42/155] Installing dwz-0:0.15-7.fc41. 100% | 285.5 MiB/s | 292.3 KiB | 00m00s [ 43/155] Installing unzip-0:6.0-64.fc4 100% | 190.6 MiB/s | 390.3 KiB | 00m00s [ 44/155] Installing file-libs-0:5.45-7 100% | 620.9 MiB/s | 9.9 MiB | 00m00s [ 45/155] Installing file-0:5.45-7.fc41 100% | 14.7 MiB/s | 105.0 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42. >>> Stop pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.noa [ 46/155] Installing crypto-policies-0: 100% | 31.9 MiB/s | 163.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42 >>> Stop post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.no [ 47/155] Installing libcap-ng-0:0.8.5- 100% | 69.4 MiB/s | 71.0 KiB | 00m00s [ 48/155] Installing audit-libs-0:4.0.2 100% | 325.6 MiB/s | 333.4 KiB | 00m00s [ 49/155] Installing pam-libs-0:1.6.1-6 100% | 138.0 MiB/s | 141.3 KiB | 00m00s [ 50/155] Installing libcap-0:2.70-4.fc 100% | 110.0 MiB/s | 225.2 KiB | 00m00s [ 51/155] Installing systemd-libs-0:256 100% | 338.9 MiB/s | 2.0 MiB | 00m00s [ 52/155] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB | 00m00s [ 53/155] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 54/155] Installing libsepol-0:3.7-2.f 100% | 399.8 MiB/s | 818.8 KiB | 00m00s [ 55/155] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB | 00m00s [ 56/155] Installing libselinux-0:3.7-5 100% | 178.0 MiB/s | 182.3 KiB | 00m00s [ 57/155] Installing sed-0:4.9-3.fc41.x 100% | 212.3 MiB/s | 869.7 KiB | 00m00s [ 58/155] Installing grep-0:3.11-9.fc41 100% | 250.8 MiB/s | 1.0 MiB | 00m00s [ 59/155] Installing findutils-1:4.10.0 100% | 309.7 MiB/s | 1.9 MiB | 00m00s [ 60/155] Installing xz-1:5.6.2-2.fc41. 100% | 241.0 MiB/s | 1.2 MiB | 00m00s [ 61/155] Installing libmount-0:2.40.2- 100% | 348.6 MiB/s | 356.9 KiB | 00m00s [ 62/155] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB | 00m00s [ 63/155] Installing alternatives-0:1.3 100% | 66.3 MiB/s | 67.9 KiB | 00m00s [ 64/155] Installing lua-libs-0:5.4.6-6 100% | 279.5 MiB/s | 286.2 KiB | 00m00s [ 65/155] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s [ 66/155] Installing libunistring-0:1.1 100% | 346.1 MiB/s | 1.7 MiB | 00m00s [ 67/155] Installing libidn2-0:2.3.7-2. 100% | 163.6 MiB/s | 335.1 KiB | 00m00s [ 68/155] Installing libpsl-0:0.21.5-4. 100% | 79.7 MiB/s | 81.7 KiB | 00m00s [ 69/155] Installing zstd-0:1.5.6-2.fc4 100% | 422.9 MiB/s | 1.7 MiB | 00m00s [ 70/155] Installing util-linux-core-0: 100% | 254.6 MiB/s | 1.5 MiB | 00m00s [ 71/155] Installing tar-2:1.35-4.fc41. 100% | 369.8 MiB/s | 3.0 MiB | 00m00s [ 72/155] Installing libsemanage-0:3.7- 100% | 144.2 MiB/s | 295.2 KiB | 00m00s [ 73/155] Installing shadow-utils-2:4.1 100% | 246.7 MiB/s | 4.2 MiB | 00m00s [ 74/155] Installing zip-0:3.0-41.fc41. 100% | 345.2 MiB/s | 707.1 KiB | 00m00s [ 75/155] Installing gdbm-1:1.23-7.fc41 100% | 227.4 MiB/s | 465.8 KiB | 00m00s [ 76/155] Installing cyrus-sasl-lib-0:2 100% | 329.4 MiB/s | 2.3 MiB | 00m00s [ 77/155] Installing libfdisk-0:2.40.2- 100% | 355.5 MiB/s | 364.0 KiB | 00m00s [ 78/155] Installing bzip2-0:1.0.8-19.f 100% | 97.8 MiB/s | 100.2 KiB | 00m00s [ 79/155] Installing libxml2-0:2.12.8-2 100% | 342.4 MiB/s | 1.7 MiB | 00m00s [ 80/155] Installing add-determinism-0: 100% | 374.3 MiB/s | 2.2 MiB | 00m00s [ 81/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 82/155] Installing sqlite-libs-0:3.46 100% | 357.3 MiB/s | 1.4 MiB | 00m00s [ 83/155] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB | 00m00s [ 84/155] Installing patch-0:2.7.6-25.f 100% | 261.9 MiB/s | 268.2 KiB | 00m00s [ 85/155] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar [ 86/155] Installing elfutils-libs-0:0. 100% | 210.9 MiB/s | 648.0 KiB | 00m00s [ 87/155] Installing cpio-0:2.15-2.fc41 100% | 274.9 MiB/s | 1.1 MiB | 00m00s [ 88/155] Installing diffutils-0:3.10-8 100% | 318.1 MiB/s | 1.6 MiB | 00m00s [ 89/155] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 79.3 KiB | 00m00s [ 90/155] Installing pkgconf-0:2.3.0-1. 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [ 91/155] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.8 KiB | 00m00s [ 92/155] Installing libverto-0:0.3.2-9 100% | 0.0 B/s | 31.3 KiB | 00m00s [ 93/155] Installing jansson-0:2.13.1-1 100% | 87.6 MiB/s | 89.7 KiB | 00m00s [ 94/155] Installing libgomp-0:14.2.1-1 100% | 256.2 MiB/s | 524.8 KiB | 00m00s [ 95/155] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s [ 96/155] Installing p11-kit-0:0.25.5-3 100% | 245.3 MiB/s | 2.2 MiB | 00m00s [ 97/155] Installing p11-kit-trust-0:0. 100% | 54.8 MiB/s | 393.1 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64 [ 98/155] Installing openssl-libs-1:3.2 100% | 372.6 MiB/s | 7.8 MiB | 00m00s [ 99/155] Installing coreutils-0:9.5-9. 100% | 272.3 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [100/155] Installing ca-certificates-0: 100% | 3.8 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [101/155] Installing krb5-libs-0:1.21.3 100% | 255.5 MiB/s | 2.3 MiB | 00m00s [102/155] Installing libarchive-0:3.7.4 100% | 301.0 MiB/s | 924.6 KiB | 00m00s [103/155] Installing libtirpc-0:1.3.5-0 100% | 199.7 MiB/s | 204.5 KiB | 00m00s [104/155] Installing gzip-0:1.13-2.fc41 100% | 192.7 MiB/s | 394.6 KiB | 00m00s [105/155] Installing authselect-libs-0: 100% | 162.7 MiB/s | 833.2 KiB | 00m00s [106/155] Installing cracklib-0:2.9.11- 100% | 81.5 MiB/s | 250.3 KiB | 00m00s [107/155] Installing libpwquality-0:1.4 100% | 105.0 MiB/s | 430.1 KiB | 00m00s [108/155] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [109/155] Installing pam-0:1.6.1-6.fc42 100% | 170.7 MiB/s | 1.9 MiB | 00m00s [110/155] Installing libssh-0:0.11.1-1. 100% | 279.2 MiB/s | 571.7 KiB | 00m00s [111/155] Installing rpm-sequoia-0:1.7. 100% | 338.2 MiB/s | 2.4 MiB | 00m00s [112/155] Installing rpm-libs-0:4.19.93 100% | 353.2 MiB/s | 723.4 KiB | 00m00s [113/155] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB | 00m00s [114/155] Installing libevent-0:2.1.12- 100% | 292.8 MiB/s | 899.5 KiB | 00m00s [115/155] Installing xxhash-libs-0:0.8. 100% | 0.0 B/s | 89.9 KiB | 00m00s [116/155] Installing libbrotli-0:1.1.0- 100% | 273.4 MiB/s | 839.9 KiB | 00m00s [117/155] Installing libnghttp2-0:1.63. 100% | 167.2 MiB/s | 171.2 KiB | 00m00s [118/155] Installing libtool-ltdl-0:2.4 100% | 0.0 B/s | 67.3 KiB | 00m00s [119/155] Installing openldap-0:2.6.8-5 100% | 210.9 MiB/s | 648.0 KiB | 00m00s [120/155] Installing libcurl-0:8.9.1-3. 100% | 266.7 MiB/s | 819.2 KiB | 00m00s [121/155] Installing elfutils-debuginfo 100% | 65.3 MiB/s | 66.9 KiB | 00m00s [122/155] Installing binutils-0:2.43.1- 100% | 372.1 MiB/s | 27.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 [123/155] Installing elfutils-0:0.191-8 100% | 320.0 MiB/s | 2.6 MiB | 00m00s [124/155] Installing gdb-minimal-0:15.1 100% | 382.1 MiB/s | 13.0 MiB | 00m00s [125/155] Installing debugedit-0:5.0-17 100% | 197.3 MiB/s | 202.0 KiB | 00m00s [126/155] Installing curl-0:8.9.1-3.fc4 100% | 70.9 MiB/s | 798.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 [127/155] Installing rpm-0:4.19.93-1.fc 100% | 178.6 MiB/s | 2.5 MiB | 00m00s [128/155] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [129/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [130/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [131/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [132/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [133/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [134/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 188.4 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 99.0 MiB/s | 202.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 168.9 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 [153/155] Installing authselect-0:1.5.0 100% | 77.1 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [155/155] Installing info-0:7.1-3.fc41. 100% | 428.1 KiB/s | 362.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 Complete! Warning: skipped PGP checks for 153 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.1-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.x86_64 coreutils-common-9.5-9.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-1.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40.9000-1.fc42.x86_64 glibc-common-2.40.9000-1.fc42.x86_64 glibc-gconv-extra-2.40.9000-1.fc42.x86_64 glibc-minimal-langpack-2.40.9000-1.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-3.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.9.1-3.fc42.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-1.fc42.x86_64 libgomp-14.2.1-1.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.63.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-5.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.x86_64 pam-libs-1.6.1-6.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.x86_64 rpm-build-4.19.93-1.fc42.x86_64 rpm-build-libs-4.19.93-1.fc42.x86_64 rpm-libs-4.19.93-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.x86_64 sqlite-libs-3.46.0-4.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-2.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1725633489.452927/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725633489.452927/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-vfasz5n6/ProDy/ProDy.spec) Config(child) 0 minutes 22 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1725633489.452927/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1725633489.452927/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1725633489.452927/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Finish: chroot init Start: build phase for ProDy-2.4.1-7.fc42.src.rpm Start: build setup for ProDy-2.4.1-7.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725580800 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc42.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 191.5 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 109.8 KiB/s | 1.5 KiB | 00m00s fedora 100% | 78.7 KiB/s | 21.2 KiB | 00m00s fedora 100% | 3.0 MiB/s | 2.7 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: gcc x86_64 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.1 MiB gcc-c++ x86_64 14.2.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.2 MiB python3-biopython x86_64 1.84-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30.0 MiB python3-devel x86_64 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-matplotlib x86_64 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.1 MiB python3-nose noarch 1.3.7-59.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-numpy x86_64 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43.8 MiB python3-scipy x86_64 1.11.3-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62.5 MiB python3-setuptools noarch 69.2.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 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MiB python3-lxml x86_64 5.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 MiB python3-matplotlib-data noarch 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 741.5 KiB python3-matplotlib-data-fonts noarch 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.9 MiB python3-matplotlib-tk x86_64 3.9.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.7 KiB python3-numpy-f2py x86_64 1:1.26.4-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB python3-olefile noarch 0.47-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 340.4 KiB python3-packaging noarch 24.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 422.3 KiB python3-pillow x86_64 10.4.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB python3-pillow-tk x86_64 10.4.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.4 KiB python3-platformdirs noarch 4.2.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-requests noarch 2.32.3-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.9 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB python3-six noarch 1.16.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB python3-tkinter x86_64 3.13.0~rc1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB tcl x86_64 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.2 MiB tk x86_64 1:8.6.14-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.6 MiB tzdata noarch 2024a-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB Transaction Summary: Installing: 105 packages Total size of inbound packages is 159 MiB. Need to download 159 MiB. After this operation 571 MiB will be used (install 571 MiB, remove 0 B). [ 1/105] gcc-c++-0:14.2.1-1.fc42.x86_6 100% | 172.8 MiB/s | 14.2 MiB | 00m00s [ 2/105] python3-devel-0:3.13.0~rc1-3. 100% | 38.7 MiB/s | 356.6 KiB | 00m00s [ 3/105] python3-biopython-0:1.84-3.fc 100% | 93.3 MiB/s | 11.6 MiB | 00m00s [ 4/105] python3-matplotlib-0:3.9.1-2. 100% | 115.5 MiB/s | 4.5 MiB | 00m00s [ 5/105] python3-nose-0:1.3.7-59.fc41. 100% | 35.5 MiB/s | 327.2 KiB | 00m00s [ 6/105] python3-numpy-1:1.26.4-8.fc41 100% | 121.1 MiB/s | 7.4 MiB | 00m00s [ 7/105] python3-setuptools-0:69.2.0-8 100% | 80.5 MiB/s | 1.4 MiB | 00m00s [ 8/105] python3-urllib3-0:1.26.19-2.f 100% | 28.1 MiB/s | 259.0 KiB | 00m00s [ 9/105] glibc-devel-0:2.40.9000-1.fc4 100% | 21.4 MiB/s | 131.6 KiB | 00m00s [ 10/105] glibc-headers-x86-0:2.40.9000 100% | 59.9 MiB/s | 552.4 KiB | 00m00s [ 11/105] python3-0:3.13.0~rc1-3.fc42.x 100% | 5.3 MiB/s | 27.4 KiB | 00m00s [ 12/105] python3-idna-0:3.8-1.fc42.noa 100% | 27.0 MiB/s | 110.5 KiB | 00m00s [ 13/105] python3-scipy-0:1.11.3-15.fc4 100% | 102.4 MiB/s | 15.9 MiB | 00m00s [ 14/105] flexiblas-netlib-0:3.4.4-3.fc 100% | 74.8 MiB/s | 3.2 MiB | 00m00s [ 15/105] libgfortran-0:14.2.1-1.fc42.x 100% | 61.1 MiB/s | 938.1 KiB | 00m00s [ 16/105] python3-numpy-f2py-1:1.26.4-8 100% | 35.0 MiB/s | 501.2 KiB | 00m00s [ 17/105] python3-pooch-0:1.8.2-3.fc41. 100% | 30.9 MiB/s | 126.4 KiB | 00m00s [ 18/105] python3-platformdirs-0:4.2.2- 100% | 8.0 MiB/s | 41.0 KiB | 00m00s [ 19/105] python3-packaging-0:24.1-2.fc 100% | 16.2 MiB/s | 116.2 KiB | 00m00s [ 20/105] python3-requests-0:2.32.3-3.f 100% | 20.8 MiB/s | 149.0 KiB | 00m00s [ 21/105] gcc-0:14.2.1-1.fc42.x86_64 100% | 103.2 MiB/s | 37.0 MiB | 00m00s [ 22/105] dejavu-sans-fonts-0:2.37-24.f 100% | 29.5 MiB/s | 1.3 MiB | 00m00s [ 23/105] freetype-0:2.13.2-6.fc41.x86_ 100% | 9.1 MiB/s | 410.7 KiB | 00m00s [ 24/105] libqhull_r-1:8.0.2-5.fc41.x86 100% | 21.9 MiB/s | 201.8 KiB | 00m00s [ 25/105] python3-cairo-0:1.25.1-5.fc41 100% | 12.2 MiB/s | 124.6 KiB | 00m00s [ 26/105] python3-cycler-0:0.11.0-13.fc 100% | 5.2 MiB/s | 21.3 KiB | 00m00s [ 27/105] python3-contourpy-0:1.3.0-1.f 100% | 32.2 MiB/s | 264.2 KiB | 00m00s [ 28/105] python3-dateutil-1:2.8.2-16.f 100% | 56.8 MiB/s | 349.0 KiB | 00m00s [ 29/105] python3-kiwisolver-0:1.4.7-1. 100% | 10.9 MiB/s | 66.7 KiB | 00m00s [ 30/105] python3-matplotlib-data-0:3.9 100% | 99.4 MiB/s | 508.9 KiB | 00m00s [ 31/105] python3-matplotlib-tk-0:3.9.1 100% | 21.8 MiB/s | 111.6 KiB | 00m00s [ 32/105] python3-pyparsing-0:3.1.2-7.f 100% | 44.0 MiB/s | 270.3 KiB | 00m00s [ 33/105] python3-pillow-0:10.4.0-2.fc4 100% | 76.4 MiB/s | 939.4 KiB | 00m00s [ 34/105] python-rpm-macros-0:3.13-3.fc 100% | 5.8 MiB/s | 17.7 KiB | 00m00s [ 35/105] pyproject-rpm-macros-0:1.14.0 100% | 10.4 MiB/s | 42.6 KiB | 00m00s [ 36/105] python3-rpm-macros-0:3.13-3.f 100% | 4.1 MiB/s | 12.4 KiB | 00m00s [ 37/105] python3-rpm-generators-0:14-1 100% | 9.5 MiB/s | 29.3 KiB | 00m00s [ 38/105] python3-six-0:1.16.0-23.fc41. 100% | 13.4 MiB/s | 41.2 KiB | 00m00s [ 39/105] tzdata-0:2024a-9.fc41.noarch 100% | 52.6 MiB/s | 430.6 KiB | 00m00s [ 40/105] python3-fonttools-0:4.53.1-2. 100% | 52.9 MiB/s | 2.9 MiB | 00m00s [ 41/105] cairo-0:1.18.0-4.fc41.x86_64 100% | 49.5 MiB/s | 709.9 KiB | 00m00s [ 42/105] flex-0:2.6.4-18.fc41.x86_64 100% | 23.8 MiB/s | 292.5 KiB | 00m00s [ 43/105] libxcrypt-devel-0:4.4.36-7.fc 100% | 4.0 MiB/s | 28.9 KiB | 00m00s [ 44/105] kernel-headers-0:6.11.0-0.rc6 100% | 70.1 MiB/s | 1.5 MiB | 00m00s [ 45/105] python3-libs-0:3.13.0~rc1-3.f 100% | 148.9 MiB/s | 8.8 MiB | 00m00s [ 46/105] libmpc-0:1.3.1-6.fc41.x86_64 100% | 5.0 MiB/s | 71.1 KiB | 00m00s [ 47/105] gcc-plugin-annobin-0:14.2.1-1 100% | 6.6 MiB/s | 54.2 KiB | 00m00s [ 48/105] annobin-plugin-gcc-0:12.70-1. 100% | 79.1 MiB/s | 971.7 KiB | 00m00s [ 49/105] make-1:4.4.1-8.fc41.x86_64 100% | 80.8 MiB/s | 579.1 KiB | 00m00s [ 50/105] libstdc++-devel-0:14.2.1-1.fc 100% | 74.7 MiB/s | 2.6 MiB | 00m00s [ 51/105] harfbuzz-0:9.0.0-3.fc42.x86_6 100% | 59.2 MiB/s | 1.0 MiB | 00m00s [ 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make-1:4.4.1-8.fc4 100% | 257.2 MiB/s | 1.8 MiB | 00m00s [ 94/107] Installing libstdc++-devel-0: 100% | 370.3 MiB/s | 15.6 MiB | 00m00s [ 95/107] Installing kernel-headers-0:6 100% | 225.6 MiB/s | 6.5 MiB | 00m00s [ 96/107] Installing libqhull_r-1:8.0.2 100% | 236.4 MiB/s | 484.2 KiB | 00m00s [ 97/107] Installing python3-matplotlib 100% | 86.4 MiB/s | 265.3 KiB | 00m00s [ 98/107] Installing python3-matplotlib 100% | 338.6 MiB/s | 21.3 MiB | 00m00s [ 99/107] Installing glibc-headers-x86- 100% | 190.5 MiB/s | 2.3 MiB | 00m00s [100/107] Installing libxcrypt-devel-0: 100% | 31.8 MiB/s | 32.6 KiB | 00m00s [101/107] Installing glibc-devel-0:2.40 100% | 40.5 MiB/s | 41.5 KiB | 00m00s [102/107] Installing gcc-0:14.2.1-1.fc4 100% | 410.2 MiB/s | 104.2 MiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [103/107] Installing gcc-c++-0:14.2.1-1 100% | 367.0 MiB/s | 38.2 MiB | 00m00s [104/107] Installing annobin-plugin-gcc 100% | 64.3 MiB/s | 987.3 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [105/107] Installing gcc-plugin-annobin 100% | 3.8 MiB/s | 62.7 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [106/107] Installing python3-biopython- 100% | 344.6 MiB/s | 30.3 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [107/107] Installing python3-nose-0:1.3 100% | 6.9 MiB/s | 1.3 MiB | 00m00s >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40.9000-1.fc42.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc42.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64 Complete! Warning: skipped PGP checks for 105 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for ProDy-2.4.1-7.fc42.src.rpm Start: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725580800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.mKRJjJ + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.6gfIll + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.np6C6j + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/prody copying prody/__init__.py -> build/lib.linux-x86_64-cpython-313/prody creating build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/select.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-x86_64-cpython-313/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/atomic creating build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/uniprot.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/quartataweb.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/pfam.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/goa.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/dali.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/cath.py -> build/lib.linux-x86_64-cpython-313/prody/database copying prody/database/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/database creating build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics creating build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble creating build/lib.linux-x86_64-cpython-313/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-x86_64-cpython-313/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/kdtree creating build/lib.linux-x86_64-cpython-313/prody/measure copying prody/measure/transform.py -> build/lib.linux-x86_64-cpython-313/prody/measure copying prody/measure/measure.py -> build/lib.linux-x86_64-cpython-313/prody/measure copying prody/measure/contacts.py -> build/lib.linux-x86_64-cpython-313/prody/measure copying prody/measure/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/measure creating build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/header.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/proteins creating build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-x86_64-cpython-313/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/sequence creating build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory creating build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin creating build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-x86_64-cpython-313/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/compounds creating build/lib.linux-x86_64-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-x86_64-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/domain_decomposition creating build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-x86_64-cpython-313/prody/utilities creating build/lib.linux-x86_64-cpython-313/prody/apps copying prody/apps/apptools.py -> build/lib.linux-x86_64-cpython-313/prody/apps copying prody/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps creating build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps creating build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps creating build/lib.linux-x86_64-cpython-313/prody/tests copying prody/tests/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests creating build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps creating build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic creating build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles creating build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics creating build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble creating build/lib.linux-x86_64-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-x86_64-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/kdtree creating build/lib.linux-x86_64-cpython-313/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure creating build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins creating build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence creating build/lib.linux-x86_64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory creating build/lib.linux-x86_64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities creating build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-x86_64-cpython-313 creating build/temp.linux-x86_64-cpython-313/prody creating build/temp.linux-x86_64-cpython-313/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-x86_64-cpython-313/prody/dynamics/rtbtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/dynamics/rtbtools.cpython-313-x86_64-linux-gnu.so building 'prody.dynamics.smtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-x86_64-cpython-313/prody/dynamics/smtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/dynamics/smtools.cpython-313-x86_64-linux-gnu.so building 'prody.sequence.msatools' extension creating build/temp.linux-x86_64-cpython-313/prody/sequence gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/msatools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/msatools.cpython-313-x86_64-linux-gnu.so building 'prody.sequence.msaio' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/msaio.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/msaio.cpython-313-x86_64-linux-gnu.so building 'prody.sequence.seqtools' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/seqtools.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/seqtools.cpython-313-x86_64-linux-gnu.so building 'prody.kdtree._CKDTree' extension creating build/temp.linux-x86_64-cpython-313/prody/kdtree gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTree.o gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTreemodule.o gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTree.o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/kdtree/_CKDTree.cpython-313-x86_64-linux-gnu.so building 'prody.proteins.ccealign' extension creating build/temp.linux-x86_64-cpython-313/prody/proteins creating build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign/ccealignmodule.o In file included from prody/utilities/tnt/tnt.h:41, from prody/proteins/ccealign/ccealignmodule.h:43, from prody/proteins/ccealign/ccealignmodule.cpp:38: In member function ‘TNT::Array1D::set_(double*, double*, double const&)’, inlined from ‘TNT::Array1D::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ~~~^~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/proteins/ccealign.cpython-313-x86_64-linux-gnu.so In member function ‘set_’, inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6, inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26: prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 260 | *p = a; | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.b7nAFn + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-313/prody/tests/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree copying build/lib.linux-x86_64-cpython-313/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps copying build/lib.linux-x86_64-cpython-313/prody/tests/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps copying build/lib.linux-x86_64-cpython-313/prody/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps copying build/lib.linux-x86_64-cpython-313/prody/apps/apptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles copying build/lib.linux-x86_64-cpython-313/prody/utilities/TreeConstruction.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/catchall.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/doctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/drawtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/eigtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/laptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/legacy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/logger.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/seqtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities copying build/lib.linux-x86_64-cpython-313/prody/utilities/settings.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-313/prody/domain_decomposition/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition copying build/lib.linux-x86_64-cpython-313/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/bird.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/ccd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds copying build/lib.linux-x86_64-cpython-313/prody/compounds/pdbligands.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/cluster.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/hic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/norm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin copying build/lib.linux-x86_64-cpython-313/prody/chromatin/straw.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/psffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajbase.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajectory.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/seqtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/msaio.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/msatools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence copying build/lib.linux-x86_64-cpython-313/prody/sequence/sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/ccealign.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/blastpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/cifheader.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/emdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/pdbclusters.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/starfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/stride.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins copying build/lib.linux-x86_64-cpython-313/prody/proteins/wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-313/prody/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-313/prody/measure/contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-313/prody/measure/measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure copying build/lib.linux-x86_64-cpython-313/prody/measure/transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-313/prody/kdtree/_CKDTree.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-313/prody/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree copying build/lib.linux-x86_64-cpython-313/prody/kdtree/kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble copying build/lib.linux-x86_64-cpython-313/prody/ensemble/pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/smtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/rtbtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/adaptive.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/bbenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/bildfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/entropy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/essa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/exanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/exgnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/gamma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/heatmapper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/imanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/mechstiff.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/mode.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/modeset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/nma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/nmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/perturb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/rtb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/sampling.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics copying build/lib.linux-x86_64-cpython-313/prody/dynamics/vmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/cath.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/dali.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/goa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/pfam.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/quartataweb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database copying build/lib.linux-x86_64-cpython-313/prody/database/uniprot.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/acceptor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/angle.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/atom.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/atomgroup.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/bond.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/chain.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/crossterm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/dihedral.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/donor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/fields.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/flags.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/improper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/nbexclusion.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/pointer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/residue.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/segment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/selection.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/atomic/subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic copying build/lib.linux-x86_64-cpython-313/prody/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/apptools.py to apptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/catchall.py to catchall.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/checkers.py to checkers.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/doctools.py to doctools.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/drawtools.py to drawtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/eigtools.py to eigtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/laptools.py to laptools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/legacy.py to legacy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/logger.py to logger.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/misctools.py to misctools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/pathtools.py to pathtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/seqtools.py to seqtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/settings.py to settings.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/bird.py to bird.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/ccd.py to ccd.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/cluster.py to cluster.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/hic.py to hic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/norm.py to norm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/straw.py to straw.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/frame.py to frame.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/psffile.py to psffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py to analysis.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msa.py to msa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msafile.py to msafile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/sequence.py to sequence.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/ciffile.py to ciffile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/cifheader.py to cifheader.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py to dssp.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/emdfile.py to emdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/fixer.py to fixer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/header.py to header.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py to localpdb.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/starfile.py to starfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/stride.py to stride.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/contacts.py to contacts.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/measure.py to measure.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/transform.py to transform.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/conformation.py to conformation.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/analysis.py to analysis.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/anm.py to anm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/compare.py to compare.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/editing.py to editing.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/entropy.py to entropy.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/essa.py to essa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exanm.py to exanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gamma.py to gamma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gnm.py to gnm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/imanm.py to imanm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mode.py to mode.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/modeset.py to modeset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nma.py to nma.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py to pca.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/perturb.py to perturb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/rtb.py to rtb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/sampling.py to sampling.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/signature.py to signature.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/cath.py to cath.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/dali.py to dali.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/goa.py to goa.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/pfam.py to pfam.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/quartataweb.py to quartataweb.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/uniprot.py to uniprot.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/acceptor.py to acceptor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/angle.py to angle.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atom.py to atom.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomic.py to atomic.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atommap.py to atommap.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/bond.py to bond.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/chain.py to chain.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/crossterm.py to crossterm.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/dihedral.py to dihedral.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/donor.py to donor.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/fields.py to fields.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/flags.py to flags.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/functions.py to functions.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/hierview.py to hierview.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/improper.py to improper.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/pointer.py to pointer.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/residue.py to residue.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/segment.py to segment.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/select.py to select.cpython-313.pyc /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/selection.py to selection.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/subset.py to subset.cpython-313.pyc byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmpf82k3u9n.py' /usr/bin/python3 /tmp/tmpf82k3u9n.py /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' removing /tmp/tmpf82k3u9n.py running install_egg_info running egg_info creating ProDy.egg-info writing ProDy.egg-info/PKG-INFO writing dependency_links to ProDy.egg-info/dependency_links.txt writing entry points to ProDy.egg-info/entry_points.txt writing requirements to ProDy.egg-info/requires.txt writing top-level names to ProDy.egg-info/top_level.txt writing manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest file 'ProDy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'prody/*/*/*.c' warning: no files found matching 'prody/*/*.cpp' warning: no files found matching 'prody/utilities/datafiles/*.txt' adding license file 'LICENSE.rst' writing manifest file 'ProDy.egg-info/SOURCES.txt' Copying ProDy.egg-info to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1-py3.13.egg-info running install_scripts Installing evol script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin Installing prody script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__ + mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody + cd scripts + cp -pr ./prody ./python3.13-prody + cp -pr ./evol ./python3.13-evol + sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol + for i in prody-3.13 + touch -r ./python3.13-prody prody-3.13 + install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13 + for i in evol-3.13 + touch -r ./python3.13-evol evol-3.13 + install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin + ln -sf /usr/bin/python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13 + cd .. + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-7.fc42 --unique-debug-suffix -2.4.1-7.fc42.x86_64 --unique-debug-src-base ProDy-2.4.1-7.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1 find-debuginfo: starting Extracting debug info from 7 files DWARF-compressing 7 files sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-7.fc42.x86_64 464 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13 /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.' /usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{' /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' /usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i' + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomic.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/select.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/subset.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/selection.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomgroup.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/flags.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/nbexclusion.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/segment.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/residue.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/improper.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/pointer.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/hierview.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/functions.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/crossterm.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/chain.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/donor.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/bond.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/dihedral.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/acceptor.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atom.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atommap.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents 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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_sequence.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_msafile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_dcdfile.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_frame.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_pathtools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_analysis.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_misctools.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_checkers.cpython-313.opt-1.pyc: rewriting with normalized contents /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents Scanned 89 directories and 714 files, processed 233 inodes, 233 modified (52 replaced + 181 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-ProDy-2.4.1-7.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.D26sSS + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.GHFoBS + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd ProDy-2.4.1 + LICENSEDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol warning: absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Provides: ProDy = 0:2.4.1-7.fc42 python-ProDy = 2.4.1-7.fc42 python3-ProDy = 2.4.1-7.fc42 python3-ProDy(x86-64) = 2.4.1-7.fc42 python3.13-ProDy = 2.4.1-7.fc42 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) python3.13dist(scipy) python3.13dist(setuptools) Obsoletes: python-ProDy < 2.4.1-7.fc42 Processing files: ProDy-debugsource-2.4.1-7.fc42.x86_64 Provides: ProDy-debugsource = 2.4.1-7.fc42 ProDy-debugsource(x86-64) = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-ProDy-debuginfo-2.4.1-7.fc42.x86_64 Provides: debuginfo(build-id) = 2baf88c744401c5935a5cdb28109e85b50cf299d debuginfo(build-id) = 8c784f2ae43f5c1f739d7818a5144907e384bf1c debuginfo(build-id) = c83378d63aa4cf48446133b759a755be86bb6d18 debuginfo(build-id) = c9a6732cf727949739292f71f5d8d50c818e76c7 debuginfo(build-id) = cb2efbe02b6f4c8086366c104660d43666993be0 debuginfo(build-id) = eeed50f9d53622a9f95b1eac40950fb7faed9c1a debuginfo(build-id) = fb175cc44310a5798c56d88b8b0b756d5c278f44 python-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo = 2.4.1-7.fc42 python3-ProDy-debuginfo(x86-64) = 2.4.1-7.fc42 python3.13-ProDy-debuginfo = 2.4.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: ProDy-debugsource(x86-64) = 2.4.1-7.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-7.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-7.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-7.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Irt2vr + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody Finish: rpmbuild ProDy-2.4.1-7.fc42.src.rpm Finish: build phase for ProDy-2.4.1-7.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1725633489.452927/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc42.src.rpm) Config(child) 1 minutes 38 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "ProDy-debugsource", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "x86_64" }, { "name": "ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "src" }, { "name": "python3-ProDy-debuginfo", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "x86_64" }, { "name": "python3-ProDy", "epoch": null, "version": "2.4.1", "release": "7.fc42", "arch": "x86_64" } ] } RPMResults finished