Warning: Permanently added '3.236.208.101' (ED25519) to the list of known hosts. Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vn_wkrel/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vn_wkrel/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1732210666.501820 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vn_wkrel/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vn_wkrel/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1732210666.501820 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-vn_wkrel/morphio/morphio.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1732210666.501820/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Copy content of container registry.fedoraproject.org/fedora:41 to /var/lib/mock/fedora-41-x86_64-bootstrap-1732210666.501820/root INFO: Checking that registry.fedoraproject.org/fedora:41 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:41 with podman image mount INFO: image registry.fedoraproject.org/fedora:41 as /var/lib/containers/storage/overlay/fbf251198d865bcc0302539eac8fc14533bce6e70eaa008da56576c9bd2c73ac/merged INFO: umounting image registry.fedoraproject.org/fedora:41 (/var/lib/containers/storage/overlay/fbf251198d865bcc0302539eac8fc14533bce6e70eaa008da56576c9bd2c73ac/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1732210666.501820/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.7.0-1.fc41.x86_64 dnf5-plugins-5.2.7.0-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 25.4 MiB/s | 5.3 MiB | 00m00s fedora 100% | 57.2 MiB/s | 35.3 MiB | 00m01s Copr repository 100% | 53.2 MiB/s | 3.3 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 142.3 MiB/s | 14.2 MiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs x86_64 3.47.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs x86_64 257~rc2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB util-linux-core x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.4 KiB xz-libs x86_64 1:5.6.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation, 178 MiB extra will be used (install 178 MiB, remove 0 B). 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redhat-rpm-config-0:296-1.fc4 100% | 18.5 MiB/s | 75.7 KiB | 00m00s [ 15/154] rpm-build-0:4.20.0-1.fc42.x86 100% | 10.5 MiB/s | 75.2 KiB | 00m00s [ 16/154] sed-0:4.9-3.fc41.x86_64 100% | 43.1 MiB/s | 309.3 KiB | 00m00s [ 17/154] shadow-utils-2:4.16.0-7.fc42. 100% | 114.3 MiB/s | 1.3 MiB | 00m00s [ 18/154] unzip-0:6.0-64.fc41.x86_64 100% | 22.6 MiB/s | 184.9 KiB | 00m00s [ 19/154] which-0:2.21-42.fc41.x86_64 100% | 8.1 MiB/s | 41.6 KiB | 00m00s [ 20/154] util-linux-0:2.40.2-8.fc42.x8 100% | 111.8 MiB/s | 1.1 MiB | 00m00s [ 21/154] tar-2:1.35-4.fc41.x86_64 100% | 43.8 MiB/s | 852.1 KiB | 00m00s [ 22/154] fedora-repos-0:42-0.3.noarch 100% | 1.5 MiB/s | 9.2 KiB | 00m00s [ 23/154] xz-1:5.6.3-2.fc42.x86_64 100% | 50.1 MiB/s | 461.7 KiB | 00m00s [ 24/154] coreutils-common-0:9.5-11.fc4 100% | 123.4 MiB/s | 2.1 MiB | 00m00s [ 25/154] glibc-common-0:2.40.9000-19.f 100% | 35.7 MiB/s | 402.5 KiB | 00m00s [ 26/154] rpm-0:4.20.0-1.fc42.x86_64 100% | 63.4 MiB/s | 519.3 KiB | 00m00s [ 27/154] libblkid-0:2.40.2-8.fc42.x86_ 100% | 20.3 MiB/s | 125.0 KiB | 00m00s [ 28/154] glibc-0:2.40.9000-19.fc42.x86 100% | 97.0 MiB/s | 2.2 MiB | 00m00s [ 29/154] libfdisk-0:2.40.2-8.fc42.x86_ 100% | 26.0 MiB/s | 159.6 KiB | 00m00s [ 30/154] libmount-0:2.40.2-8.fc42.x86_ 100% | 19.1 MiB/s | 156.1 KiB | 00m00s [ 31/154] libsmartcols-0:2.40.2-8.fc42. 100% | 16.4 MiB/s | 83.9 KiB | 00m00s [ 32/154] libuuid-0:2.40.2-8.fc42.x86_6 100% | 7.1 MiB/s | 29.0 KiB | 00m00s [ 33/154] xz-libs-1:5.6.3-2.fc42.x86_64 100% | 21.9 MiB/s | 111.9 KiB | 00m00s [ 34/154] util-linux-core-0:2.40.2-8.fc 100% | 63.7 MiB/s | 521.5 KiB | 00m00s [ 35/154] fedora-gpg-keys-0:42-0.3.noar 100% | 20.1 MiB/s | 123.4 KiB | 00m00s [ 36/154] fedora-repos-rawhide-0:42-0.3 100% | 2.1 MiB/s | 8.8 KiB | 00m00s [ 37/154] rpm-libs-0:4.20.0-1.fc42.x86_ 100% | 43.2 MiB/s | 309.5 KiB | 00m00s [ 38/154] rpm-build-libs-0:4.20.0-1.fc4 100% | 16.1 MiB/s | 98.7 KiB | 00m00s [ 39/154] glibc-gconv-extra-0:2.40.9000 100% | 135.1 MiB/s | 1.6 MiB | 00m00s [ 40/154] libxcrypt-0:4.4.36-10.fc42.x8 100% | 19.4 MiB/s | 119.0 KiB | 00m00s [ 41/154] libselinux-0:3.7-6.fc42.x86_6 100% | 14.4 MiB/s | 88.6 KiB | 00m00s [ 42/154] systemd-libs-0:257~rc2-2.fc42 100% | 72.2 MiB/s | 813.0 KiB | 00m00s [ 43/154] ncurses-libs-0:6.5-2.20240629 100% | 46.6 MiB/s | 334.0 KiB | 00m00s [ 44/154] pam-0:1.7.0-2.fc42.x86_64 100% | 63.9 MiB/s | 523.5 KiB | 00m00s [ 45/154] libeconf-0:0.7.4-3.fc42.x86_6 100% | 5.6 MiB/s | 34.6 KiB | 00m00s [ 46/154] pam-libs-0:1.7.0-2.fc42.x86_6 100% | 9.4 MiB/s | 57.9 KiB | 00m00s [ 47/154] audit-libs-0:4.0.2-1.fc41.x86 100% | 20.5 MiB/s | 126.2 KiB | 00m00s [ 48/154] authselect-libs-0:1.5.0-8.fc4 100% | 33.3 MiB/s | 204.7 KiB | 00m00s [ 49/154] authselect-0:1.5.0-8.fc42.x86 100% | 23.0 MiB/s | 141.2 KiB | 00m00s [ 50/154] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 4.5 MiB/s | 32.6 KiB | 00m00s [ 51/154] zlib-ng-compat-0:2.2.2-1.fc42 100% | 15.0 MiB/s | 76.9 KiB | 00m00s [ 52/154] readline-0:8.2-11.fc42.x86_64 100% | 29.8 MiB/s 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binutils-0:2.43.50-8.fc42.x86 100% | 205.5 MiB/s | 5.8 MiB | 00m00s [ 79/154] libpkgconf-0:2.3.0-1.fc42.x86 100% | 5.4 MiB/s | 38.5 KiB | 00m00s [ 80/154] zstd-0:1.5.6-2.fc41.x86_64 100% | 39.2 MiB/s | 481.5 KiB | 00m00s [ 81/154] build-reproducibility-srpm-ma 100% | 2.2 MiB/s | 11.2 KiB | 00m00s [ 82/154] curl-0:8.10.1-2.fc42.x86_64 100% | 36.0 MiB/s | 221.3 KiB | 00m00s [ 83/154] pyproject-srpm-macros-0:1.16. 100% | 2.7 MiB/s | 13.9 KiB | 00m00s [ 84/154] qt6-srpm-macros-0:6.8.0-1.fc4 100% | 1.8 MiB/s | 9.0 KiB | 00m00s [ 85/154] add-determinism-0:0.4.3-1.fc4 100% | 98.1 MiB/s | 904.4 KiB | 00m00s [ 86/154] dwz-0:0.15-8.fc42.x86_64 100% | 22.6 MiB/s | 139.1 KiB | 00m00s [ 87/154] ansible-srpm-macros-0:1-16.fc 100% | 2.9 MiB/s | 20.8 KiB | 00m00s [ 88/154] efi-srpm-macros-0:5-12.fc41.n 100% | 4.4 MiB/s | 22.4 KiB | 00m00s [ 89/154] fonts-srpm-macros-1:2.0.5-17. 100% | 5.3 MiB/s | 27.0 KiB | 00m00s [ 90/154] forge-srpm-macros-0:0.4.0-1.f 100% | 3.2 MiB/s | 19.8 KiB | 00m00s [ 91/154] 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zig-srpm-macros-0:1-3.fc41.no 100% | 2.0 MiB/s | 8.1 KiB | 00m00s [105/154] zip-0:3.0-41.fc41.x86_64 100% | 36.9 MiB/s | 264.8 KiB | 00m00s [106/154] ed-0:1.20.2-2.fc41.x86_64 100% | 13.3 MiB/s | 81.8 KiB | 00m00s [107/154] libtirpc-0:1.3.6-1.fc42.x86_6 100% | 18.5 MiB/s | 94.9 KiB | 00m00s [108/154] gdbm-1:1.23-7.fc41.x86_64 100% | 28.8 MiB/s | 147.2 KiB | 00m00s [109/154] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 5.8 MiB/s | 29.6 KiB | 00m00s [110/154] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 9.2 MiB/s | 56.3 KiB | 00m00s [111/154] libpwquality-0:1.4.5-11.fc41. 100% | 17.6 MiB/s | 108.2 KiB | 00m00s [112/154] ncurses-base-0:6.5-2.20240629 100% | 10.4 MiB/s | 63.8 KiB | 00m00s [113/154] openssl-libs-1:3.2.2-9.fc41.x 100% | 165.1 MiB/s | 2.3 MiB | 00m00s [114/154] libcom_err-0:1.47.1-6.fc42.x8 100% | 3.2 MiB/s | 26.6 KiB | 00m00s [115/154] krb5-libs-0:1.21.3-3.fc42.x86 100% | 73.9 MiB/s | 756.3 KiB | 00m00s [116/154] libsepol-0:3.7-3.fc42.x86_64 100% | 55.7 MiB/s | 342.2 KiB | 00m00s [117/154] cracklib-0:2.9.11-6.fc41.x86_ 100% | 13.3 MiB/s | 81.7 KiB | 00m00s [118/154] pcre2-0:10.44-1.fc41.1.x86_64 100% | 33.9 MiB/s | 243.1 KiB | 00m00s [119/154] crypto-policies-0:20241106-1. 100% | 14.3 MiB/s | 73.3 KiB | 00m00s [120/154] lz4-libs-0:1.10.0-1.fc41.x86_ 100% | 11.5 MiB/s | 70.7 KiB | 00m00s [121/154] libxml2-0:2.12.8-2.fc41.x86_6 100% | 95.9 MiB/s | 687.3 KiB | 00m00s [122/154] basesystem-0:11-21.fc41.noarc 100% | 1.4 MiB/s | 7.4 KiB | 00m00s [123/154] keyutils-libs-0:1.6.3-4.fc41. 100% | 4.4 MiB/s | 31.6 KiB | 00m00s [124/154] libverto-0:0.3.2-9.fc41.x86_6 100% | 2.9 MiB/s | 20.7 KiB | 00m00s [125/154] elfutils-default-yama-scope-0 100% | 2.4 MiB/s | 12.3 KiB | 00m00s [126/154] mpfr-0:4.2.1-5.fc41.x86_64 100% | 48.3 MiB/s | 346.3 KiB | 00m00s [127/154] filesystem-0:3.18-29.fc42.x86 100% | 107.0 MiB/s | 1.1 MiB | 00m00s [128/154] json-c-0:0.18-1.fc42.x86_64 100% | 8.7 MiB/s | 44.4 KiB | 00m00s [129/154] libstdc++-0:14.2.1-6.fc42.x86 100% | 108.7 MiB/s | 890.1 KiB | 00m00s 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KiB | 00m00s [143/154] libssh-config-0:0.11.1-1.fc42 100% | 1.3 MiB/s | 9.4 KiB | 00m00s [144/154] xxhash-libs-0:0.8.2-4.fc42.x8 100% | 7.2 MiB/s | 36.8 KiB | 00m00s [145/154] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 55.4 MiB/s | 340.5 KiB | 00m00s [146/154] gdb-minimal-0:15.2-3.fc42.x86 100% | 126.8 MiB/s | 4.3 MiB | 00m00s [147/154] libidn2-0:2.3.7-2.fc41.x86_64 100% | 13.7 MiB/s | 112.6 KiB | 00m00s [148/154] libpsl-0:0.21.5-4.fc41.x86_64 100% | 7.8 MiB/s | 64.1 KiB | 00m00s [149/154] openldap-0:2.6.8-5.fc41.x86_6 100% | 41.6 MiB/s | 255.6 KiB | 00m00s [150/154] libevent-0:2.1.12-14.fc41.x86 100% | 41.9 MiB/s | 257.5 KiB | 00m00s [151/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 70.6 MiB/s | 794.9 KiB | 00m00s [152/154] libtool-ltdl-0:2.4.7-12.fc41. 100% | 7.0 MiB/s | 35.6 KiB | 00m00s [153/154] libunistring-0:1.1-8.fc41.x86 100% | 76.0 MiB/s | 544.8 KiB | 00m00s [154/154] publicsuffix-list-dafsa-0:202 100% | 9.5 MiB/s | 58.3 KiB | 00m00s -------------------------------------------------------------------------------- [154/154] Total 100% | 101.6 MiB/s | 52.1 MiB | 00m01s Running transaction Importing PGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. [ 1/156] Verify package files 100% | 974.0 B/s | 154.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64 >>> Finished pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64 >>> [RPM] /var/lib/mock/fedora-41-x86_64-1732210666.501820/root/var/cache/dnf/co [ 2/156] Prepare transaction 100% | 4.2 KiB/s | 154.0 B | 00m00s [ 3/156] Installing libgcc-0:14.2.1-6. 100% | 265.9 MiB/s | 272.3 KiB | 00m00s [ 4/156] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 5/156] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/156] Installing fedora-release-ide 100% | 0.0 B/s | 976.0 B | 00m00s [ 7/156] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/156] Installing fedora-gpg-keys-0: 100% | 56.1 MiB/s | 172.2 KiB | 00m00s [ 9/156] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/156] Installing fedora-release-com 100% | 23.4 MiB/s | 24.0 KiB | 00m00s [ 11/156] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/156] Installing setup-0:2.15.0-5.f 100% | 70.9 MiB/s | 726.1 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/156] Installing filesystem-0:3.18- 100% | 3.9 MiB/s | 212.6 KiB | 00m00s [ 14/156] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/156] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s [ 16/156] Installing ncurses-base-0:6.5 100% | 85.9 MiB/s | 351.7 KiB | 00m00s [ 17/156] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 18/156] Installing ncurses-libs-0:6.5 100% | 239.7 MiB/s | 981.8 KiB | 00m00s [ 19/156] Installing glibc-0:2.40.9000- 100% | 320.2 MiB/s | 6.7 MiB | 00m00s [ 20/156] Installing bash-0:5.2.37-1.fc 100% | 453.9 MiB/s | 8.2 MiB | 00m00s [ 21/156] Installing glibc-common-0:2.4 100% | 211.8 MiB/s | 1.1 MiB | 00m00s [ 22/156] Installing glibc-gconv-extra- 100% | 313.1 MiB/s | 8.1 MiB | 00m00s [ 23/156] Installing zlib-ng-compat-0:2 100% | 0.0 B/s | 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00m00s [ 62/156] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB | 00m00s [ 63/156] Installing alternatives-0:1.3 100% | 0.0 B/s | 67.9 KiB | 00m00s [ 64/156] Installing libffi-0:3.4.6-3.f 100% | 0.0 B/s | 87.8 KiB | 00m00s [ 65/156] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s [ 66/156] Installing p11-kit-0:0.25.5-4 100% | 316.6 MiB/s | 2.2 MiB | 00m00s [ 67/156] Installing libunistring-0:1.1 100% | 432.7 MiB/s | 1.7 MiB | 00m00s [ 68/156] Installing libidn2-0:2.3.7-2. 100% | 163.6 MiB/s | 335.1 KiB | 00m00s [ 69/156] Installing libpsl-0:0.21.5-4. 100% | 0.0 B/s | 81.7 KiB | 00m00s [ 70/156] Installing p11-kit-trust-0:0. 100% | 56.6 MiB/s | 405.5 KiB | 00m00s [ 71/156] Installing zstd-0:1.5.6-2.fc4 100% | 422.9 MiB/s | 1.7 MiB | 00m00s [ 72/156] Installing util-linux-core-0: 100% | 254.6 MiB/s | 1.5 MiB | 00m00s [ 73/156] Installing tar-2:1.35-4.fc41. 100% | 422.6 MiB/s | 3.0 MiB | 00m00s [ 74/156] Installing libsemanage-0:3.7- 100% | 146.4 MiB/s 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libpwquality-0:1.4 100% | 140.0 MiB/s | 430.1 KiB | 00m00s [127/156] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [128/156] Installing pam-0:1.7.0-2.fc42 100% | 170.8 MiB/s | 1.7 MiB | 00m00s [129/156] Installing libssh-0:0.11.1-1. 100% | 279.2 MiB/s | 571.7 KiB | 00m00s [130/156] Installing rpm-sequoia-0:1.7. 100% | 394.5 MiB/s | 2.4 MiB | 00m00s [131/156] Installing rpm-libs-0:4.20.0- 100% | 355.3 MiB/s | 727.7 KiB | 00m00s [132/156] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB | 00m00s [133/156] Installing libevent-0:2.1.12- 100% | 439.2 MiB/s | 899.5 KiB | 00m00s [134/156] Installing openldap-0:2.6.8-5 100% | 316.4 MiB/s | 648.0 KiB | 00m00s [135/156] Installing libcurl-0:8.10.1-2 100% | 409.9 MiB/s | 839.5 KiB | 00m00s [136/156] Installing elfutils-debuginfo 100% | 80.7 MiB/s | 82.6 KiB | 00m00s [137/156] Installing elfutils-0:0.192-6 100% | 377.8 MiB/s | 2.6 MiB | 00m00s [138/156] Installing binutils-0:2.43.50 100% | 410.6 MiB/s | 25.5 MiB | 00m00s [139/156] Installing gdb-minimal-0:15.2 100% | 419.0 MiB/s | 13.0 MiB | 00m00s [140/156] Installing debugedit-0:5.1-1. 100% | 190.8 MiB/s | 195.4 KiB | 00m00s [141/156] Installing curl-0:8.10.1-2.fc 100% | 49.5 MiB/s | 455.8 KiB | 00m00s [142/156] Installing rpm-0:4.20.0-1.fc4 100% | 208.8 MiB/s | 2.5 MiB | 00m00s [143/156] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [144/156] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/156] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 94.4 MiB/s | 193.2 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.0 100% | 99.1 MiB/s | 202.9 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 185.8 MiB/s | 3.7 MiB | 00m00s [154/156] Installing authselect-0:1.5.0 100% | 158.1 MiB/s | 161.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s [156/156] Installing info-0:7.1.1-2.fc4 100% | 248.5 KiB/s | 362.2 KiB | 00m01s Warning: skipped PGP checks for 153 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-8.fc42.x86_64 authselect-libs-1.5.0-8.fc42.x86_64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.43.50-8.fc42.x86_64 build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-2.fc42.noarch coreutils-9.5-11.fc42.x86_64 coreutils-common-9.5-11.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241106-1.git35892de.fc42.noarch curl-8.10.1-2.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-1.fc42.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc42.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.192-6.fc42.x86_64 elfutils-debuginfod-client-0.192-6.fc42.x86_64 elfutils-default-yama-scope-0.192-6.fc42.noarch elfutils-libelf-0.192-6.fc42.x86_64 elfutils-libs-0.192-6.fc42.x86_64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.8.noarch fedora-release-common-42-0.8.noarch fedora-release-identity-basic-42-0.8.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.2-3.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-19.fc42.x86_64 glibc-common-2.40.9000-19.fc42.x86_64 glibc-gconv-extra-2.40.9000-19.fc42.x86_64 glibc-minimal-langpack-2.40.9000-19.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-2.fc42.x86_64 jansson-2.14-1.fc42.x86_64 json-c-0.18-1.fc42.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-3.fc42.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.7-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.71-1.fc42.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc42.x86_64 libcurl-8.10.1-2.fc42.x86_64 libeconf-0.7.4-3.fc42.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-6.fc42.x86_64 libgomp-14.2.1-6.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.64.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-6.fc42.x86_64 libsemanage-3.7-3.fc42.x86_64 libsepol-3.7-3.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-6.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-1.fc42.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-10.fc42.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.7-1.fc42.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-9.fc41.x86_64 p11-kit-0.25.5-4.fc42.x86_64 p11-kit-trust-0.25.5-4.fc42.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-2.fc42.x86_64 pam-libs-1.7.0-2.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.2-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.0-1.fc42.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-296-1.fc42.noarch rpm-4.20.0-1.fc42.x86_64 rpm-build-4.20.0-1.fc42.x86_64 rpm-build-libs-4.20.0-1.fc42.x86_64 rpm-libs-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-7.fc42.x86_64 sqlite-libs-3.47.0-1.fc42.x86_64 systemd-libs-257~rc2-2.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-4.fc42.x86_64 xz-5.6.3-2.fc42.x86_64 xz-libs-5.6.3-2.fc42.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.2.2-1.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1732210666.501820/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-vn_wkrel/morphio/morphio.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/morphio-3.4.0-4.fc42.src.rpm) Config(fedora-41-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1732210666.501820/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1732210666.501820/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1732210666.501820/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.7.0-1.fc41.x86_64 dnf5-plugins-5.2.7.0-1.fc41.x86_64 Finish: chroot init Start: build phase for morphio-3.4.0-4.fc42.src.rpm Start: build setup for morphio-3.4.0-4.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc42.src.rpm Updating and loading repositories: fedora 100% | 784.6 KiB/s | 27.5 KiB | 00m00s updates 100% | 929.2 KiB/s | 29.7 KiB | 00m00s Copr repository 100% | 128.1 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel x86_64 1.83.0-8.fc41 copr_base 143.0 MiB catch2-devel x86_64 2.13.10-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 952.8 KiB cmake x86_64 3.30.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.7 MiB gcc-c++ x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38.1 MiB gsl-lite-devel x86_64 0.41.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308.1 KiB gulrak-filesystem-devel x86_64 1.5.14-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.2 KiB hdf5-devel x86_64 1.14.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.3 MiB highfive-devel x86_64 2.10.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 377.0 KiB lcov noarch 2.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 930.9 KiB lexertl14-devel x86_64 1:0.1.0^20240506gitbca1359-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 573.7 KiB ninja-build x86_64 1.12.1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 432.6 KiB pybind11-devel x86_64 2.13.6-1.fc42 copr_base 847.8 KiB python3-devel x86_64 3.13.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB tomcli noarch 0.8.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125.7 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB annobin-docs noarch 12.77-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98.4 KiB annobin-plugin-gcc x86_64 12.77-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 991.3 KiB boost x86_64 1.83.0-8.fc41 copr_base 1.3 KiB boost-atomic x86_64 1.83.0-8.fc41 copr_base 25.0 KiB boost-chrono x86_64 1.83.0-8.fc41 copr_base 41.6 KiB boost-container x86_64 1.83.0-8.fc41 copr_base 69.5 KiB boost-context x86_64 1.83.0-8.fc41 copr_base 16.5 KiB boost-contract x86_64 1.83.0-8.fc41 copr_base 103.2 KiB boost-coroutine x86_64 1.83.0-8.fc41 copr_base 25.1 KiB boost-date-time x86_64 1.83.0-8.fc41 copr_base 16.3 KiB boost-fiber x86_64 1.83.0-8.fc41 copr_base 82.8 KiB boost-filesystem x86_64 1.83.0-8.fc41 copr_base 147.6 KiB boost-graph x86_64 1.83.0-8.fc41 copr_base 346.3 KiB boost-iostreams x86_64 1.83.0-8.fc41 copr_base 94.7 KiB boost-json x86_64 1.83.0-8.fc41 copr_base 329.1 KiB boost-locale x86_64 1.83.0-8.fc41 copr_base 606.3 KiB boost-log x86_64 1.83.0-8.fc41 copr_base 1.5 MiB boost-math x86_64 1.83.0-8.fc41 copr_base 662.9 KiB boost-nowide x86_64 1.83.0-8.fc41 copr_base 24.9 KiB boost-numpy3 x86_64 1.83.0-8.fc41 copr_base 57.6 KiB boost-program-options x86_64 1.83.0-8.fc41 copr_base 272.7 KiB boost-python3 x86_64 1.83.0-8.fc41 copr_base 254.4 KiB boost-random x86_64 1.83.0-8.fc41 copr_base 33.7 KiB boost-regex x86_64 1.83.0-8.fc41 copr_base 275.0 KiB boost-serialization x86_64 1.83.0-8.fc41 copr_base 441.6 KiB boost-stacktrace x86_64 1.83.0-8.fc41 copr_base 68.1 KiB boost-system x86_64 1.83.0-8.fc41 copr_base 16.3 KiB boost-test x86_64 1.83.0-8.fc41 copr_base 643.0 KiB boost-thread x86_64 1.83.0-8.fc41 copr_base 136.8 KiB boost-timer x86_64 1.83.0-8.fc41 copr_base 25.1 KiB boost-type_erasure x86_64 1.83.0-8.fc41 copr_base 58.2 KiB boost-wave x86_64 1.83.0-8.fc41 copr_base 639.8 KiB cmake-data noarch 3.30.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.2 MiB cmake-filesystem x86_64 3.30.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B cmake-rpm-macros noarch 3.30.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.5 KiB cpp x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.0 MiB default-fonts-core-sans noarch 4.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.9 KiB emacs-filesystem noarch 1:30.0-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B expat x86_64 2.6.4-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285.5 KiB flexiblas x86_64 3.4.4-3.fc41 copr_base 48.5 KiB flexiblas-netlib x86_64 3.4.4-3.fc41 copr_base 10.7 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 copr_base 43.3 KiB fontconfig x86_64 2.15.0-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 791.9 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B freetype x86_64 2.13.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 850.5 KiB gcc x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.3 MiB gcc-gfortran x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.2 MiB gcc-plugin-annobin x86_64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.6 KiB gd x86_64 2.3.3-17.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43.8 MiB python3-packaging noarch 24.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 555.7 KiB python3-rpm-generators noarch 14-11.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.4 KiB python3-tomlkit noarch 0.13.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 453.7 KiB rav1e-libs x86_64 0.7.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rhash x86_64 1.4.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 359.3 KiB svt-av1-libs x86_64 2.1.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.1 MiB tomcli+tomlkit noarch 0.8.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 KiB tzdata noarch 2024a-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB vim-filesystem noarch 2:9.1.866-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.0 B xml-common noarch 0.6.3-65.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB zlib-ng-compat-devel x86_64 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.8 KiB Transaction Summary: Installing: 268 packages Total size of inbound packages is 186 MiB. Need to download 186 MiB. After this operation, 753 MiB extra will be used (install 753 MiB, remove 0 B). [ 1/268] catch2-devel-0:2.13.10-5.fc41 100% | 6.4 MiB/s | 197.0 KiB | 00m00s [ 2/268] gulrak-filesystem-devel-0:1.5 100% | 7.3 MiB/s | 59.6 KiB | 00m00s [ 3/268] gsl-lite-devel-0:0.41.0-5.fc4 100% | 10.0 MiB/s | 61.5 KiB | 00m00s [ 4/268] highfive-devel-0:2.10.0-2.fc4 100% | 10.5 MiB/s | 85.6 KiB | 00m00s [ 5/268] pybind11-devel-0:2.13.6-1.fc4 100% | 15.7 MiB/s | 177.3 KiB | 00m00s [ 6/268] boost-devel-0:1.83.0-8.fc41.x 100% | 130.5 MiB/s | 11.7 MiB | 00m00s [ 7/268] gcc-c++-0:14.2.1-6.fc42.x86_6 100% | 131.1 MiB/s | 14.2 MiB | 00m00s [ 8/268] hdf5-devel-0:1.14.5-1.fc42.x8 100% | 16.1 MiB/s | 1.4 MiB | 00m00s [ 9/268] lcov-0:2.0-4.fc41.noarch 100% | 36.4 MiB/s | 223.8 KiB | 00m00s [ 10/268] lexertl14-devel-1:0.1.0^20240 100% | 19.0 MiB/s | 97.0 KiB | 00m00s [ 11/268] ninja-build-0:1.12.1-3.fc41.x 100% | 22.0 MiB/s | 180.0 KiB | 00m00s [ 12/268] python3-devel-0:3.13.0-1.fc42 100% | 49.8 MiB/s | 357.2 KiB | 00m00s [ 13/268] tomcli-0:0.8.0-1.fc42.noarch 100% | 9.2 MiB/s | 56.7 KiB | 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perl-Try-Tiny-0:0.32-1.fc42.n 100% | 5.2 MiB/s | 37.6 KiB | 00m00s [143/268] perl-Data-Dumper-0:2.189-512. 100% | 11.0 MiB/s | 56.3 KiB | 00m00s [144/268] perl-namespace-autoclean-0:0. 100% | 4.3 MiB/s | 26.1 KiB | 00m00s [145/268] perl-if-0:0.61.000-512.fc42.n 100% | 3.4 MiB/s | 14.0 KiB | 00m00s [146/268] perl-overloading-0:0.02-512.f 100% | 3.1 MiB/s | 12.9 KiB | 00m00s [147/268] libxcrypt-devel-0:4.4.36-10.f 100% | 5.6 MiB/s | 28.9 KiB | 00m00s [148/268] fontconfig-0:2.15.0-8.fc41.x8 100% | 41.8 MiB/s | 257.0 KiB | 00m00s [149/268] kernel-headers-0:6.12.0-65.fc 100% | 77.9 MiB/s | 1.5 MiB | 00m00s [150/268] freetype-0:2.13.3-1.fc42.x86_ 100% | 33.3 MiB/s | 409.2 KiB | 00m00s [151/268] libX11-common-0:1.8.10-2.fc42 100% | 28.3 MiB/s | 144.8 KiB | 00m00s [152/268] libX11-0:1.8.10-2.fc42.x86_64 100% | 45.3 MiB/s | 649.7 KiB | 00m00s [153/268] libicu-0:74.2-2.fc41.x86_64 100% | 221.1 MiB/s | 10.4 MiB | 00m00s [154/268] libXpm-0:3.5.17-4.fc41.x86_64 100% | 5.0 MiB/s | 66.0 KiB | 00m00s 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3.7 MiB/s | 19.2 KiB | 00m00s [194/268] perltidy-0:20240903-1.fc42.no 100% | 110.2 MiB/s | 789.7 KiB | 00m00s [195/268] perl-PadWalker-0:2.5-15.fc41. 100% | 5.3 MiB/s | 27.2 KiB | 00m00s [196/268] perl-Class-Singleton-0:1.6-12 100% | 6.2 MiB/s | 25.5 KiB | 00m00s [197/268] perl-File-Compare-0:1.100.800 100% | 2.6 MiB/s | 13.2 KiB | 00m00s [198/268] perl-DateTime-TimeZone-Tzfile 100% | 3.8 MiB/s | 19.5 KiB | 00m00s [199/268] perl-File-ShareDir-0:1.118-12 100% | 5.8 MiB/s | 29.8 KiB | 00m00s [200/268] perl-Hash-Util-FieldHash-0:1. 100% | 7.6 MiB/s | 38.8 KiB | 00m00s [201/268] perl-Module-Implementation-0: 100% | 3.7 MiB/s | 19.1 KiB | 00m00s [202/268] perl-Sub-Exporter-Progressive 100% | 3.4 MiB/s | 21.0 KiB | 00m00s [203/268] jbigkit-libs-0:2.1-30.fc41.x8 100% | 8.7 MiB/s | 53.3 KiB | 00m00s [204/268] perl-Variable-Magic-0:0.64-3. 100% | 7.7 MiB/s | 55.3 KiB | 00m00s [205/268] liblerc-0:4.0.0-7.fc41.x86_64 100% | 34.2 MiB/s | 210.3 KiB | 00m00s [206/268] libdav1d-0:1.5.0-1.fc42.x86_6 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glib2-0:2.83.0-2.fc42.x86_64 100% | 101.1 MiB/s | 3.0 MiB | 00m00s [220/268] perl-Term-ANSIColor-0:5.01-51 100% | 5.8 MiB/s | 47.7 KiB | 00m00s [221/268] perl-Term-Cap-0:1.18-511.fc41 100% | 2.7 MiB/s | 22.1 KiB | 00m00s [222/268] perl-Package-Stash-0:0.40-8.f 100% | 5.3 MiB/s | 32.6 KiB | 00m00s [223/268] perl-Sub-Exporter-0:0.991-4.f 100% | 13.9 MiB/s | 71.4 KiB | 00m00s [224/268] ncurses-0:6.5-2.20240629.fc41 100% | 58.5 MiB/s | 419.1 KiB | 00m00s [225/268] perl-Data-OptList-0:0.114-5.f 100% | 5.3 MiB/s | 26.9 KiB | 00m00s [226/268] perl-Params-Util-0:1.102-16.f 100% | 8.0 MiB/s | 32.8 KiB | 00m00s [227/268] perl-Package-Generator-0:1.10 100% | 4.4 MiB/s | 22.5 KiB | 00m00s [228/268] perl-Sub-Install-0:0.929-6.fc 100% | 4.5 MiB/s | 22.9 KiB | 00m00s [229/268] perl-Text-Tabs+Wrap-0:2024.00 100% | 5.3 MiB/s | 21.9 KiB | 00m00s [230/268] perl-Pod-Escapes-1:1.07-511.f 100% | 3.9 MiB/s | 19.8 KiB | 00m00s [231/268] perl-Package-Stash-XS-0:0.30- 100% | 8.8 MiB/s | 36.1 KiB | 00m00s 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00m00s [245/268] perl-Devel-CallChecker-0:0.00 100% | 3.9 MiB/s | 23.9 KiB | 00m00s [246/268] perl-Clone-0:0.47-1.fc42.x86_ 100% | 3.6 MiB/s | 22.3 KiB | 00m00s [247/268] openblas-openmp-0:0.3.28-1.fc 100% | 180.6 MiB/s | 5.1 MiB | 00m00s [248/268] perl-Compress-Raw-Zlib-0:2.21 100% | 7.1 MiB/s | 65.3 KiB | 00m00s [249/268] perl-Encode-Locale-0:1.05-30. 100% | 2.3 MiB/s | 18.6 KiB | 00m00s [250/268] perl-HTTP-Date-0:6.06-5.fc41. 100% | 4.8 MiB/s | 24.4 KiB | 00m00s [251/268] perl-IO-Compress-0:2.213-1.fc 100% | 47.9 MiB/s | 294.5 KiB | 00m00s [252/268] perl-Compress-Raw-Bzip2-0:2.2 100% | 8.8 MiB/s | 36.2 KiB | 00m00s [253/268] perl-IO-HTML-0:1.004-13.fc41. 100% | 5.4 MiB/s | 27.6 KiB | 00m00s [254/268] perl-LWP-MediaTypes-0:6.04-19 100% | 6.5 MiB/s | 33.1 KiB | 00m00s [255/268] perl-I18N-Langinfo-0:0.24-512 100% | 4.2 MiB/s | 25.7 KiB | 00m00s [256/268] perl-DynaLoader-Functions-0:0 100% | 3.7 MiB/s | 19.0 KiB | 00m00s [257/268] mailcap-0:2.1.54-7.fc41.noarc 100% | 6.7 MiB/s | 34.4 KiB | 00m00s [258/268] tomcli+tomlkit-0:0.8.0-1.fc42 100% | 1.7 MiB/s | 8.6 KiB | 00m00s [259/268] python3-tomlkit-0:0.13.2-1.fc 100% | 21.9 MiB/s | 112.3 KiB | 00m00s [260/268] gcc-plugin-annobin-0:14.2.1-6 100% | 11.2 MiB/s | 57.1 KiB | 00m00s [261/268] pyproject-rpm-macros-0:1.16.2 100% | 8.7 MiB/s | 44.7 KiB | 00m00s [262/268] cmake-rpm-macros-0:3.30.5-1.f 100% | 3.3 MiB/s | 16.8 KiB | 00m00s [263/268] python-rpm-macros-0:3.13-3.fc 100% | 2.9 MiB/s | 17.7 KiB | 00m00s [264/268] python3-rpm-generators-0:14-1 100% | 7.2 MiB/s | 29.3 KiB | 00m00s [265/268] python3-rpm-macros-0:3.13-3.f 100% | 2.4 MiB/s | 12.4 KiB | 00m00s [266/268] annobin-docs-0:12.77-1.fc42.n 100% | 15.0 MiB/s | 92.4 KiB | 00m00s [267/268] annobin-plugin-gcc-0:12.77-1. 100% | 106.0 MiB/s | 977.2 KiB | 00m00s [268/268] python3-packaging-0:24.2-2.fc 100% | 15.6 MiB/s | 143.6 KiB | 00m00s -------------------------------------------------------------------------------- [268/268] Total 100% | 182.7 MiB/s | 186.4 MiB | 00m01s Running transaction [ 1/270] Verify package files 100% | 507.0 B/s | 268.0 B | 00m01s [ 2/270] Prepare transaction 100% | 1.9 KiB/s | 268.0 B | 00m00s [ 3/270] Installing cmake-filesystem-0 100% | 7.1 MiB/s | 7.3 KiB | 00m00s [ 4/270] Installing boost-system-0:1.8 100% | 0.0 B/s | 17.2 KiB | 00m00s [ 5/270] Installing boost-chrono-0:1.8 100% | 0.0 B/s | 42.6 KiB | 00m00s [ 6/270] Installing boost-thread-0:1.8 100% | 134.5 MiB/s | 137.7 KiB | 00m00s [ 7/270] Installing libicu-0:74.2-2.fc 100% | 426.3 MiB/s | 35.0 MiB | 00m00s [ 8/270] Installing libmpc-0:1.3.1-6.f 100% | 162.3 MiB/s | 166.2 KiB | 00m00s [ 9/270] Installing libgfortran-0:14.2 100% | 507.4 MiB/s | 3.0 MiB | 00m00s [ 10/270] Installing boost-regex-0:1.83 100% | 269.5 MiB/s | 276.0 KiB | 00m00s [ 11/270] Installing python-rpm-macros- 100% | 0.0 B/s | 22.8 KiB | 00m00s [ 12/270] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 13/270] Installing libwebp-0:1.4.0-4. 100% | 403.7 MiB/s | 826.8 KiB | 00m00s [ 14/270] Installing boost-context-0:1. 100% | 0.0 B/s | 17.5 KiB | 00m00s [ 15/270] Installing boost-atomic-0:1.8 100% | 0.0 B/s | 25.9 KiB | 00m00s [ 16/270] Installing boost-filesystem-0 100% | 145.1 MiB/s | 148.6 KiB | 00m00s [ 17/270] Installing libquadmath-0:14.2 100% | 319.5 MiB/s | 327.2 KiB | 00m00s [ 18/270] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 19/270] Installing libpng-2:1.6.44-1. 100% | 241.2 MiB/s | 247.0 KiB | 00m00s [ 20/270] Installing libjpeg-turbo-0:3. 100% | 386.1 MiB/s | 790.8 KiB | 00m00s [ 21/270] Installing boost-date-time-0: 100% | 0.0 B/s | 17.3 KiB | 00m00s [ 22/270] Installing boost-container-0: 100% | 0.0 B/s | 70.5 KiB | 00m00s [ 23/270] Installing make-1:4.4.1-9.fc4 100% | 360.0 MiB/s | 1.8 MiB | 00m00s [ 24/270] Installing libaec-0:1.1.3-1.f 100% | 98.1 MiB/s | 100.5 KiB | 00m00s [ 25/270] Installing vim-filesystem-2:9 100% | 0.0 B/s | 4.7 KiB | 00m00s [ 26/270] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [ 27/270] Installing expat-0:2.6.4-1.fc 100% | 280.9 MiB/s | 287.6 KiB | 00m00s [ 28/270] Installing hdf5-0:1.14.5-1.fc 100% | 395.5 MiB/s | 7.1 MiB | 00m00s [ 29/270] Installing libaec-devel-0:1.1 100% | 0.0 B/s | 13.5 KiB | 00m00s [ 30/270] Installing boost-json-0:1.83. 100% | 322.4 MiB/s | 330.1 KiB | 00m00s [ 31/270] Installing boost-wave-0:1.83. 100% | 312.9 MiB/s | 640.8 KiB | 00m00s [ 32/270] Installing pyproject-rpm-macr 100% | 113.0 MiB/s | 115.7 KiB | 00m00s [ 33/270] Installing boost-fiber-0:1.83 100% | 81.8 MiB/s | 83.7 KiB | 00m00s [ 34/270] Installing boost-log-0:1.83.0 100% | 368.8 MiB/s | 1.5 MiB | 00m00s [ 35/270] Installing boost-coroutine-0: 100% | 0.0 B/s | 26.2 KiB | 00m00s [ 36/270] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB | 00m00s [ 37/270] Installing boost-graph-0:1.83 100% | 339.2 MiB/s | 347.3 KiB | 00m00s [ 38/270] Installing cpp-0:14.2.1-6.fc4 100% | 411.5 MiB/s | 35.0 MiB | 00m00s [ 39/270] Installing libicu-devel-0:74. 100% | 331.8 MiB/s | 5.6 MiB | 00m00s [ 40/270] Installing boost-locale-0:1.8 100% | 296.5 MiB/s | 607.2 KiB | 00m00s [ 41/270] Installing boost-type_erasure 100% | 0.0 B/s | 59.2 KiB | 00m00s [ 42/270] Installing boost-timer-0:1.83 100% | 0.0 B/s | 25.9 KiB | 00m00s [ 43/270] Installing zlib-ng-compat-dev 100% | 0.0 B/s | 108.3 KiB | 00m00s [ 44/270] Installing annobin-docs-0:12. 100% | 97.2 MiB/s | 99.5 KiB | 00m00s [ 45/270] Installing mailcap-0:2.1.54-7 100% | 0.0 B/s | 87.1 KiB | 00m00s [ 46/270] Installing openblas-0:0.3.28- 100% | 0.0 B/s | 108.3 KiB | 00m00s [ 47/270] Installing openblas-openmp-0: 100% | 667.5 MiB/s | 39.4 MiB | 00m00s [ 48/270] Installing flexiblas-0:3.4.4- 100% | 0.0 B/s | 49.7 KiB | 00m00s [ 49/270] Installing flexiblas-openblas 100% | 0.0 B/s | 44.1 KiB | 00m00s [ 50/270] Installing flexiblas-netlib-0 100% | 463.7 MiB/s | 10.7 MiB | 00m00s [ 51/270] Installing nettle-0:3.10-3.fc 100% | 388.7 MiB/s | 796.1 KiB | 00m00s [ 52/270] Installing gnutls-0:3.8.8-1.f 100% | 406.1 MiB/s | 3.2 MiB | 00m00s [ 53/270] Installing glib2-0:2.83.0-2.f 100% | 446.7 MiB/s | 14.7 MiB | 00m00s [ 54/270] Installing libXau-0:1.0.11-7. 100% | 0.0 B/s | 68.4 KiB | 00m00s [ 55/270] Installing libxcb-0:1.17.0-3. 100% | 297.0 MiB/s | 1.2 MiB | 00m00s [ 56/270] Installing ncurses-0:6.5-2.20 100% | 309.5 MiB/s | 633.9 KiB | 00m00s [ 57/270] Installing graphite2-0:1.3.14 100% | 189.6 MiB/s | 194.1 KiB | 00m00s [ 58/270] Installing harfbuzz-0:10.1.0- 100% | 384.6 MiB/s | 2.7 MiB | 00m00s [ 59/270] Installing freetype-0:2.13.3- 100% | 277.4 MiB/s | 852.2 KiB | 00m00s [ 60/270] Installing libvmaf-0:3.0.0-2. 100% | 402.5 MiB/s | 824.4 KiB | 00m00s [ 61/270] Installing libaom-0:3.9.0-3.f 100% | 460.1 MiB/s | 5.1 MiB | 00m00s [ 62/270] Installing svt-av1-libs-0:2.1 100% | 474.7 MiB/s | 7.1 MiB | 00m00s [ 63/270] Installing rav1e-libs-0:0.7.1 100% | 430.4 MiB/s | 3.0 MiB | 00m00s [ 64/270] Installing libdav1d-0:1.5.0-1 100% | 414.6 MiB/s | 1.7 MiB | 00m00s [ 65/270] Installing libavif-0:1.0.4-7. 100% | 180.8 MiB/s | 185.1 KiB | 00m00s [ 66/270] Installing liblerc-0:4.0.0-7. 100% | 297.4 MiB/s | 609.0 KiB | 00m00s [ 67/270] Installing jbigkit-libs-0:2.1 100% | 116.8 MiB/s | 119.6 KiB | 00m00s [ 68/270] Installing libtiff-0:4.7.0-2. 100% | 67.5 MiB/s | 622.3 KiB | 00m00s [ 69/270] Installing groff-base-0:1.23. 100% | 203.8 MiB/s | 3.9 MiB | 00m00s [ 70/270] Installing perl-Digest-0:1.20 100% | 0.0 B/s | 37.1 KiB | 00m00s [ 71/270] Installing perl-Digest-MD5-0: 100% | 60.2 MiB/s | 61.7 KiB | 00m00s [ 72/270] Installing perl-B-0:1.89-512. 100% | 244.8 MiB/s | 501.3 KiB | 00m00s [ 73/270] Installing perl-FileHandle-0: 100% | 0.0 B/s | 9.8 KiB | 00m00s [ 74/270] Installing perl-Data-Dumper-0 100% | 110.9 MiB/s | 113.6 KiB | 00m00s [ 75/270] Installing perl-MIME-Base32-0 100% | 0.0 B/s | 32.2 KiB | 00m00s [ 76/270] Installing perl-libnet-0:3.15 100% | 287.8 MiB/s | 294.7 KiB | 00m00s [ 77/270] Installing perl-AutoLoader-0: 100% | 0.0 B/s | 20.9 KiB | 00m00s [ 78/270] Installing perl-IO-Socket-IP- 100% | 98.1 MiB/s | 100.5 KiB | 00m00s [ 79/270] Installing perl-URI-0:5.31-1. 100% | 131.7 MiB/s | 269.6 KiB | 00m00s [ 80/270] Installing perl-Time-Local-2: 100% | 0.0 B/s | 70.6 KiB | 00m00s [ 81/270] Installing perl-File-Path-0:2 100% | 0.0 B/s | 64.5 KiB | 00m00s [ 82/270] Installing perl-locale-0:1.12 100% | 0.0 B/s | 6.9 KiB | 00m00s [ 83/270] Installing perl-if-0:0.61.000 100% | 0.0 B/s | 6.2 KiB | 00m00s [ 84/270] Installing perl-Net-SSLeay-0: 100% | 272.5 MiB/s | 1.4 MiB | 00m00s [ 85/270] Installing perl-Pod-Escapes-1 100% | 0.0 B/s | 25.9 KiB | 00m00s [ 86/270] Installing perl-Text-Tabs+Wra 100% | 0.0 B/s | 23.9 KiB | 00m00s [ 87/270] Installing perl-IO-Socket-SSL 100% | 345.4 MiB/s | 707.4 KiB | 00m00s [ 88/270] Installing perl-POSIX-0:2.20- 100% | 230.8 MiB/s | 236.4 KiB | 00m00s [ 89/270] Installing perl-Class-Struct- 100% | 0.0 B/s | 25.9 KiB | 00m00s [ 90/270] Installing perl-File-Temp-1:0 100% | 160.2 MiB/s | 164.1 KiB | 00m00s [ 91/270] Installing perl-IPC-Open3-0:1 100% | 0.0 B/s | 23.3 KiB | 00m00s [ 92/270] Installing perl-Term-ANSIColo 100% | 0.0 B/s | 99.2 KiB | 00m00s [ 93/270] Installing perl-Term-Cap-0:1. 100% | 0.0 B/s | 30.6 KiB | 00m00s [ 94/270] Installing perl-Pod-Simple-1: 100% | 278.5 MiB/s | 570.5 KiB | 00m00s [ 95/270] Installing perl-HTTP-Tiny-0:0 100% | 152.8 MiB/s | 156.4 KiB | 00m00s [ 96/270] Installing perl-Socket-4:2.03 100% | 123.1 MiB/s | 126.1 KiB | 00m00s [ 97/270] Installing perl-SelectSaver-0 100% | 0.0 B/s | 2.6 KiB | 00m00s [ 98/270] Installing perl-Symbol-0:1.09 100% | 0.0 B/s | 7.2 KiB | 00m00s [ 99/270] Installing perl-File-stat-0:1 100% | 0.0 B/s | 13.1 KiB | 00m00s [100/270] Installing perl-podlators-1:6 100% | 313.9 MiB/s | 321.4 KiB | 00m00s [101/270] Installing perl-Pod-Perldoc-0 100% | 165.3 MiB/s | 169.3 KiB | 00m00s [102/270] Installing perl-base-0:2.27-5 100% | 0.0 B/s | 12.9 KiB | 00m00s [103/270] Installing perl-Fcntl-0:1.18- 100% | 0.0 B/s | 50.1 KiB | 00m00s [104/270] Installing perl-Text-ParseWor 100% | 0.0 B/s | 14.6 KiB | 00m00s [105/270] Installing perl-overloading-0 100% | 0.0 B/s | 5.5 KiB | 00m00s [106/270] Installing perl-IO-0:1.55-512 100% | 151.6 MiB/s | 155.2 KiB | 00m00s [107/270] Installing perl-mro-0:1.29-51 100% | 0.0 B/s | 46.7 KiB | 00m00s [108/270] Installing perl-Pod-Usage-4:2 100% | 84.3 MiB/s | 86.3 KiB | 00m00s [109/270] Installing perl-File-Basename 100% | 0.0 B/s | 14.6 KiB | 00m00s [110/270] Installing perl-constant-0:1. 100% | 0.0 B/s | 27.4 KiB | 00m00s [111/270] Installing perl-Errno-0:1.38- 100% | 0.0 B/s | 8.8 KiB | 00m00s [112/270] Installing perl-vars-0:1.05-5 100% | 0.0 B/s | 4.3 KiB | 00m00s [113/270] Installing perl-parent-1:0.24 100% | 0.0 B/s | 10.7 KiB | 00m00s [114/270] Installing perl-Scalar-List-U 100% | 149.0 MiB/s | 152.6 KiB | 00m00s [115/270] Installing perl-Getopt-Std-0: 100% | 0.0 B/s | 11.7 KiB | 00m00s [116/270] Installing perl-MIME-Base64-0 100% | 0.0 B/s | 48.4 KiB | 00m00s [117/270] Installing perl-Storable-1:3. 100% | 228.5 MiB/s | 234.0 KiB | 00m00s [118/270] Installing perl-overload-0:1. 100% | 0.0 B/s | 71.9 KiB | 00m00s [119/270] Installing perl-Getopt-Long-1 100% | 143.8 MiB/s | 147.2 KiB | 00m00s [120/270] Installing perl-Exporter-0:5. 100% | 0.0 B/s | 55.6 KiB | 00m00s [121/270] Installing perl-DynaLoader-0: 100% | 0.0 B/s | 32.5 KiB | 00m00s [122/270] Installing perl-PathTools-0:3 100% | 180.2 MiB/s | 184.6 KiB | 00m00s [123/270] Installing perl-Encode-4:3.21 100% | 428.9 MiB/s | 4.7 MiB | 00m00s [124/270] Installing perl-Carp-0:1.54-5 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [125/270] Installing perl-libs-4:5.40.0 100% | 302.3 MiB/s | 10.0 MiB | 00m00s [126/270] Installing perl-interpreter-4 100% | 121.1 MiB/s | 124.0 KiB | 00m00s [127/270] Installing perl-version-9:0.9 100% | 132.5 MiB/s | 135.6 KiB | 00m00s [128/270] Installing perl-Module-Runtim 100% | 0.0 B/s | 31.5 KiB | 00m00s [129/270] Installing perl-Dist-CheckCon 100% | 0.0 B/s | 33.1 KiB | 00m00s [130/270] Installing perl-File-Find-0:1 100% | 0.0 B/s | 42.5 KiB | 00m00s [131/270] Installing perl-Try-Tiny-0:0. 100% | 69.4 MiB/s | 71.1 KiB | 00m00s [132/270] Installing perl-Module-Implem 100% | 0.0 B/s | 26.1 KiB | 00m00s [133/270] Installing perl-File-Copy-0:2 100% | 0.0 B/s | 20.2 KiB | 00m00s [134/270] Installing perl-Module-Load-1 100% | 0.0 B/s | 15.9 KiB | 00m00s [135/270] Installing perl-TimeDate-1:2. 100% | 101.2 MiB/s | 103.7 KiB | 00m00s [136/270] Installing perl-common-sense- 100% | 0.0 B/s | 48.9 KiB | 00m00s [137/270] Installing perl-Math-Complex- 100% | 0.0 B/s | 85.8 KiB | 00m00s [138/270] Installing perl-Devel-StackTr 100% | 0.0 B/s | 50.6 KiB | 00m00s [139/270] Installing perl-Params-Util-0 100% | 55.8 MiB/s | 57.2 KiB | 00m00s [140/270] Installing perl-Sub-Install-0 100% | 0.0 B/s | 37.2 KiB | 00m00s [141/270] Installing perl-Date-ISO8601- 100% | 0.0 B/s | 25.5 KiB | 00m00s [142/270] Installing perl-Compress-Raw- 100% | 161.7 MiB/s | 165.6 KiB | 00m00s [143/270] Installing perl-Data-OptList- 100% | 0.0 B/s | 52.2 KiB | 00m00s [144/270] Installing perl-Math-BigInt-1 100% | 469.6 MiB/s | 961.8 KiB | 00m00s [145/270] Installing perl-JSON-0:4.10-6 100% | 266.6 MiB/s | 273.0 KiB | 00m00s [146/270] Installing perl-Types-Seriali 100% | 0.0 B/s | 24.8 KiB | 00m00s [147/270] Installing perl-JSON-XS-1:4.0 100% | 267.1 MiB/s | 273.5 KiB | 00m00s [148/270] Installing perl-HTTP-Date-0:6 100% | 0.0 B/s | 42.6 KiB | 00m00s [149/270] Installing perl-Module-Metada 100% | 0.0 B/s | 69.0 KiB | 00m00s [150/270] Installing perl-Module-CoreLi 100% | 585.1 MiB/s | 1.2 MiB | 00m00s [151/270] Installing perl-Pod-Html-0:1. 100% | 0.0 B/s | 43.8 KiB | 00m00s [152/270] Installing perl-Capture-Tiny- 100% | 0.0 B/s | 71.8 KiB | 00m00s [153/270] Installing perl-Time-HiRes-4: 100% | 119.1 MiB/s | 121.9 KiB | 00m00s [154/270] Installing perl-lib-0:0.65-51 100% | 0.0 B/s | 8.9 KiB | 00m00s [155/270] Installing perl-I18N-LangTags 100% | 0.0 B/s | 83.6 KiB | 00m00s [156/270] Installing perl-Locale-Makete 100% | 169.9 MiB/s | 173.9 KiB | 00m00s [157/270] Installing perl-Locale-Makete 100% | 0.0 B/s | 13.5 KiB | 00m00s [158/270] Installing perl-Params-Check- 100% | 0.0 B/s | 28.6 KiB | 00m00s [159/270] Installing perl-Module-Load-C 100% | 0.0 B/s | 29.9 KiB | 00m00s [160/270] Installing perl-MRO-Compat-0: 100% | 0.0 B/s | 44.9 KiB | 00m00s [161/270] Installing perl-XString-0:0.0 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [162/270] Installing perl-Class-Method- 100% | 107.0 MiB/s | 109.6 KiB | 00m00s [163/270] Installing perl-Role-Tiny-0:2 100% | 62.0 MiB/s | 63.5 KiB | 00m00s [164/270] Installing perl-Ref-Util-XS-0 100% | 43.7 MiB/s | 44.7 KiB | 00m00s [165/270] Installing perl-Ref-Util-0:0. 100% | 0.0 B/s | 33.2 KiB | 00m00s [166/270] Installing perl-Class-Data-In 100% | 0.0 B/s | 7.0 KiB | 00m00s [167/270] Installing perl-Exception-Cla 100% | 0.0 B/s | 94.6 KiB | 00m00s [168/270] Installing perl-PadWalker-0:2 100% | 0.0 B/s | 46.7 KiB | 00m00s [169/270] 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repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: build setup for morphio-3.4.0-4.fc42.src.rpm Start: rpmbuild morphio-3.4.0-4.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.rAAWrO + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + test -d /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/rm -rf /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.RdXCmG + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd /builddir/build/BUILD/morphio-3.4.0-build + rm -rf MorphIO-3.4.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/MorphIO-3.4.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd MorphIO-3.4.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-them-using-a-random-env-var.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/remove-upstreams-flags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/install-python-shared-object.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Downstream-only-Allow-passing-CMake-defs-through-an-.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pytest-float32.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/use-lib_install_dir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/allow_use_of_external_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/dont_use_cmake_for_finding_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/515.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/512.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rvf 3rdparty/GSL_LITE removed directory '3rdparty/GSL_LITE' + sed -r -i /GSL_LITE/d MANIFEST.in + sed -r -i '/director.*\(.*(gsl-lite|GSL_LITE).*\)/d' 3rdparty/CMakeLists.txt + sed -r -i -e /TARGET_PROPERTY:gsl-lite,INTERFACE_INCLUDE_DIRECTORIES/d -e 's/PUBLIC[[:blank:]]+gsl-lite[[:blank:]]+(PRIVATE)/\1/' src/CMakeLists.txt + grep -ErIl '#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl[">]' . + xargs -r sed -r -i 's@(#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl)([">])@\1-lite\.hpp\2@' + rm -rvf 3rdparty/lexertl + ln -s /usr/include/lexertl 3rdparty/ + find . -type f -name .gitignore -print -delete ./.gitignore ./doc/source/doxygen/.gitignore + tomcli set pyproject.toml lists delitem --type regex --no-first build-system.requires '^(cmake|ninja)$' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.qLHNOy + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement not satisfied: h5py>=2.9.0 Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement not satisfied: pytest>=6.0 Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Exiting dependency generation pass: all requirements files + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 118.2 KiB/s | 1.5 KiB | 00m00s updates 100% | 108.1 KiB/s | 29.7 KiB | 00m00s fedora 100% | 457.7 KiB/s | 27.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 182.3 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Failed to resolve the transaction: Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed. Package "cmake-3.30.5-1.fc42.x86_64" is already installed. Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "hdf5-devel-1.14.5-1.fc42.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "lcov-2.0-4.fc41.noarch" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.2-1.fc42.noarch" is already installed. Package "python3-devel-3.13.0-1.fc42.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "tomcli-0.8.0-1.fc42.noarch" is already installed. Problem: installed package hdf5-devel-1.14.5-1.fc42.x86_64 requires hdf5(x86-64) = 1.14.5-1.fc42, but none of the providers can be installed - cannot install both hdf5-1.12.1-20.fc41.x86_64 from fedora and hdf5-1.14.5-1.fc42.x86_64 from @System - cannot install both hdf5-1.14.5-1.fc42.x86_64 from http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch and hdf5-1.12.1-20.fc41.x86_64 from fedora - package python3-h5py-3.12.1-3.fc42.x86_64 from copr_base requires libhdf5.so.200()(64bit), but none of the providers can be installed - package python3-h5py-3.12.1-3.fc42.x86_64 from copr_base requires libhdf5_hl.so.200()(64bit), but none of the providers can be installed - package python3-h5py-3.12.1-3.fc42.x86_64 from copr_base requires hdf5(x86-64) = 1.12.1, but none of the providers can be installed - cannot install the best candidate for the job You can try to add to command line: --no-best to not limit the transaction to the best candidates WARNING: DNF5 command failed, retrying, attempt #2, sleeping 10s Updating and loading repositories: fedora 100% | 261.5 KiB/s | 27.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 102.5 KiB/s | 1.5 KiB | 00m00s updates 100% | 334.1 KiB/s | 29.7 KiB | 00m00s Repositories loaded. Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed. Package "cmake-3.30.5-1.fc42.x86_64" is already installed. Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "hdf5-devel-1.14.5-1.fc42.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "lcov-2.0-4.fc41.noarch" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.2-1.fc42.noarch" is already installed. Package "python3-devel-3.13.0-1.fc42.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "tomcli-0.8.0-1.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-h5py x86_64 3.12.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.4 MiB python3-pip noarch 24.3.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.3 MiB python3-pytest noarch 8.3.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.8 MiB Installing dependencies: liblzf x86_64 3.6-29.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53.8 KiB python3-cached_property noarch 2.0.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34.8 KiB python3-iniconfig noarch 1.1.1-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.6 KiB python3-pluggy noarch 1.5.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 193.2 KiB python3-six noarch 1.16.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.3 KiB Transaction Summary: Installing: 8 packages Total size of inbound packages is 6 MiB. Need to download 6 MiB. After this operation, 37 MiB extra will be used (install 37 MiB, remove 0 B). [1/8] python3-pip-0:24.3.1-1.fc42.noarc 100% | 71.9 MiB/s | 2.5 MiB | 00m00s [2/8] python3-pytest-0:8.3.3-3.fc42.noa 100% | 48.0 MiB/s | 2.0 MiB | 00m00s [3/8] python3-iniconfig-0:1.1.1-23.fc41 100% | 2.5 MiB/s | 18.1 KiB | 00m00s [4/8] liblzf-0:3.6-29.fc41.x86_64 100% | 6.8 MiB/s | 28.0 KiB | 00m00s [5/8] python3-pluggy-0:1.5.0-1.fc41.noa 100% | 8.6 MiB/s | 53.1 KiB | 00m00s [6/8] python3-cached_property-0:2.0.1-1 100% | 3.2 MiB/s | 19.9 KiB | 00m00s [7/8] python3-six-0:1.16.0-23.fc41.noar 100% | 8.1 MiB/s | 41.2 KiB | 00m00s [8/8] python3-h5py-0:3.12.1-3.fc42.x86_ 100% | 17.6 MiB/s | 1.1 MiB | 00m00s -------------------------------------------------------------------------------- [8/8] Total 100% | 89.5 MiB/s | 5.8 MiB | 00m00s Running transaction [ 1/10] Verify package files 100% | 500.0 B/s | 8.0 B | 00m00s [ 2/10] Prepare transaction 100% | 228.0 B/s | 8.0 B | 00m00s [ 3/10] Installing python3-six-0:1.16.0 100% | 117.9 MiB/s | 120.7 KiB | 00m00s [ 4/10] Installing python3-cached_prope 100% | 0.0 B/s | 37.5 KiB | 00m00s [ 5/10] Installing liblzf-0:3.6-29.fc41 100% | 54.8 MiB/s | 56.2 KiB | 00m00s [ 6/10] Installing python3-pluggy-0:1.5 100% | 194.7 MiB/s | 199.4 KiB | 00m00s [ 7/10] Installing python3-iniconfig-0: 100% | 23.0 MiB/s | 23.6 KiB | 00m00s [ 8/10] Installing python3-pytest-0:8.3 100% | 476.3 MiB/s | 21.0 MiB | 00m00s [ 9/10] Installing python3-h5py-0:3.12. 100% | 316.8 MiB/s | 4.4 MiB | 00m00s [10/10] Installing python3-pip-0:24.3.1 100% | 178.7 MiB/s | 11.6 MiB | 00m00s Warning: skipped PGP checks for 8 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.q6gfdG + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.3) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Handling setuptools>=24.2.0 from build-system.requires Requirement not satisfied: setuptools>=24.2.0 Handling wheel from build-system.requires Requirement not satisfied: wheel Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: updates 100% | 495.6 KiB/s | 29.7 KiB | 00m00s fedora 100% | 156.9 KiB/s | 27.5 KiB | 00m00s Copr repository 100% | 128.1 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed. Package "cmake-3.30.5-1.fc42.x86_64" is already installed. Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "hdf5-devel-1.14.5-1.fc42.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "lcov-2.0-4.fc41.noarch" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.2-1.fc42.noarch" is already installed. Package "python3-devel-3.13.0-1.fc42.x86_64" is already installed. Package "python3-h5py-3.12.1-3.fc42.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-pytest-8.3.3-3.fc42.noarch" is already installed. Package "tomcli-0.8.0-1.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-setuptools noarch 74.1.3-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.4 MiB python3-wheel noarch 1:0.44.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 521.0 KiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 2 MiB. Need to download 2 MiB. After this operation, 9 MiB extra will be used (install 9 MiB, remove 0 B). [1/2] python3-wheel-1:0.44.0-1.fc42.noa 100% | 5.0 MiB/s | 153.5 KiB | 00m00s [2/2] python3-setuptools-0:74.1.3-4.fc4 100% | 49.1 MiB/s | 1.8 MiB | 00m00s -------------------------------------------------------------------------------- [2/2] Total 100% | 53.1 MiB/s | 2.0 MiB | 00m00s Running transaction [1/4] Verify package files 100% | 400.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 133.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-wheel-1:0.44.0 100% | 132.0 MiB/s | 540.6 KiB | 00m00s [4/4] Installing python3-setuptools-0:7 100% | 167.8 MiB/s | 8.6 MiB | 00m00s Warning: skipped PGP checks for 2 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.1Si5Nc + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.3) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Handling setuptools>=24.2.0 from build-system.requires Requirement satisfied: setuptools>=24.2.0 (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.44.0) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Handling setuptools_scm from get_requires_for_build_wheel Requirement not satisfied: setuptools_scm Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 103.2 KiB/s | 27.5 KiB | 00m00s updates 100% | 258.6 KiB/s | 29.7 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 139.7 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed. Package "cmake-3.30.5-1.fc42.x86_64" is already installed. Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "hdf5-devel-1.14.5-1.fc42.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "lcov-2.0-4.fc41.noarch" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.2-1.fc42.noarch" is already installed. Package "python3-devel-3.13.0-1.fc42.x86_64" is already installed. Package "python3-h5py-3.12.1-3.fc42.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-pytest-8.3.3-3.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package "python3-wheel-1:0.44.0-1.fc42.noarch" is already installed. Package "tomcli-0.8.0-1.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-setuptools_scm noarch 8.1.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 320.0 KiB Transaction Summary: Installing: 1 package Total size of inbound packages is 101 KiB. Need to download 101 KiB. After this operation, 320 KiB extra will be used (install 320 KiB, remove 0 B). [1/1] python3-setuptools_scm-0:8.1.0-1. 100% | 4.3 MiB/s | 101.4 KiB | 00m00s -------------------------------------------------------------------------------- [1/1] Total 100% | 4.1 MiB/s | 101.4 KiB | 00m00s Running transaction [1/3] Verify package files 100% | 0.0 B/s | 1.0 B | 00m00s [2/3] Prepare transaction 100% | 100.0 B/s | 1.0 B | 00m00s [3/3] Installing python3-setuptools_scm 100% | 19.5 MiB/s | 339.7 KiB | 00m00s Warning: skipped PGP checks for 1 package from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.zZJMEu + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.3) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Handling setuptools>=24.2.0 from build-system.requires Requirement satisfied: setuptools>=24.2.0 (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.44.0) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 8.1.0) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating morphio.egg-info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt writing manifest file 'morphio.egg-info/SOURCES.txt' reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'morphio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/morphio-3.4.0.dist-info' Handling numpy>=1.14.1 from hook generated metadata: Requires-Dist (morphio) Requirement satisfied: numpy>=1.14.1 (installed: numpy 1.26.4) Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (morphio) Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs" + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires + rm -rfv morphio-3.4.0.dist-info/ removed 'morphio-3.4.0.dist-info/top_level.txt' removed 'morphio-3.4.0.dist-info/METADATA' removed 'morphio-3.4.0.dist-info/LICENSE.txt' removed 'morphio-3.4.0.dist-info/AUTHORS.txt' removed directory 'morphio-3.4.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 128.1 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s | 3.8 KiB | 00m00s fedora 100% | 100.2 KiB/s | 27.5 KiB | 00m00s updates 100% | 260.8 KiB/s | 29.7 KiB | 00m00s Repositories loaded. Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed. Package "cmake-3.30.5-1.fc42.x86_64" is already installed. Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-9.fc42.x86_64" is already installed. Package "hdf5-devel-1.14.5-1.fc42.x86_64" is already installed. Package "highfive-devel-2.10.0-2.fc42.x86_64" is already installed. Package "lcov-2.0-4.fc41.noarch" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-3.fc42.x86_64" is already installed. Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.2-1.fc42.noarch" is already installed. Package "python3-devel-3.13.0-1.fc42.x86_64" is already installed. Package "python3-h5py-3.12.1-3.fc42.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-pytest-8.3.3-3.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package "python3-setuptools_scm-8.1.0-1.fc42.noarch" is already installed. Package "python3-wheel-1:0.44.0-1.fc42.noarch" is already installed. Package "tomcli-0.8.0-1.fc42.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.lorGS4 + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.3) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Handling setuptools>=24.2.0 from build-system.requires Requirement satisfied: setuptools>=24.2.0 (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.44.0) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 8.1.0) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'morphio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/morphio-3.4.0.dist-info' Handling numpy>=1.14.1 from hook generated metadata: Requires-Dist (morphio) Requirement satisfied: numpy>=1.14.1 (installed: numpy 1.26.4) Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (morphio) Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs" + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-buildrequires + rm -rfv morphio-3.4.0.dist-info/ removed 'morphio-3.4.0.dist-info/top_level.txt' removed 'morphio-3.4.0.dist-info/METADATA' removed 'morphio-3.4.0.dist-info/LICENSE.txt' removed 'morphio-3.4.0.dist-info/AUTHORS.txt' removed directory 'morphio-3.4.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0eRASE + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_BINDINGS:BOOL=FALSE -DEXTERNAL_CATCH2:BOOL=TRUE -DEXTERNAL_GHC_FILESYSTEM:BOOL=TRUE -DEXTERNAL_HIGHFIVE:BOOL=TRUE -DEXTERNAL_PYBIND11:BOOL=TRUE -DMORPHIO_ENABLE_COVERAGE:BOOL=TRUE -DMORPHIO_TESTS:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DMORPHIO_VERSION_STRING:STRING=3.4.0 -DMorphIO_CXX_WARNINGS:BOOL=FALSE -GNinja -Wno-dev -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Performing Test HAVE_fprofile_abs_path -- Performing Test HAVE_fprofile_abs_path - Success CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): src/CMakeLists.txt:85 (include) CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): tests/CMakeLists.txt:43 (include) -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 4 [1/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/enums.cpp.o -MF src/CMakeFiles/morphio_obj.dir/enums.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/enums.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/enums.cpp [2/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/endoplasmic_reticulum.cpp [3/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -MF src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/errorMessages.cpp [4/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -MF src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/dendritic_spine.cpp [5/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -MF src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/glial_cell.cpp [6/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o -MF src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/mito_section.cpp [7/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o -MF src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/error_message_generation.cpp [8/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o -MF src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o -c 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mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE + mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE + mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE + mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE + mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG + mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG + mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_VERBOSE_MAKEFILE:BOOL=ON + mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_VERBOSE_MAKEFILE:BOOL=ON,CMAKE_INSTALL_DO_STRIP:BOOL=OFF + export MORPHIO_CMAKE_DEFS=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_VERBOSE_MAKEFILE:BOOL=ON,CMAKE_INSTALL_DO_STRIP:BOOL=OFF + MORPHIO_CMAKE_DEFS=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_VERBOSE_MAKEFILE:BOOL=ON,CMAKE_INSTALL_DO_STRIP:BOOL=OFF + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir Processing /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-6b3b4tbi/morphio.egg-info writing /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-6b3b4tbi/morphio.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-6b3b4tbi/morphio.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-6b3b4tbi/morphio.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-6b3b4tbi/morphio.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-6b3b4tbi/morphio.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-6b3b4tbi/morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-6b3b4tbi/morphio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-6b3b4tbi/morphio-3.4.0.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: morphio Building wheel for morphio (pyproject.toml): started Running command Building wheel for morphio (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/morphio copying morphio/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio creating build/lib.linux-x86_64-cpython-313/morphio/mut copying morphio/mut/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio/mut creating build/lib.linux-x86_64-cpython-313/morphio/vasculature copying morphio/vasculature/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio/vasculature running build_ext CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include) CMakeLists.txt:42 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:45 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter -- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP HIGHFIVE_EXAMPLES HIGHFIVE_UNIT_TESTS -- Build files have been written to: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313 Change Dir: '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313' Run Build Command(s): /usr/bin/ninja-build -v _morphio [1/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/enums.cpp.o -MF src/CMakeFiles/morphio_obj.dir/enums.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/enums.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/enums.cpp [2/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/endoplasmic_reticulum.cpp [3/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -MF src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o.d -o 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src/CMakeFiles/morphio_obj.dir/vasc/vasculature.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/vasc/vasculature.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/vasc/vasculature.cpp [38/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o -MF 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binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_enums.cpp [40/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/readers/morphologyASC.cpp.o -MF src/CMakeFiles/morphio_obj.dir/readers/morphologyASC.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/readers/morphologyASC.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/readers/morphologyASC.cpp [41/48] : && /usr/bin/cmake -E rm -f src/libmorphio_static.a && /usr/bin/ar qc src/libmorphio_static.a src/CMakeFiles/morphio_obj.dir/collection.cpp.o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o src/CMakeFiles/morphio_obj.dir/enums.cpp.o src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o src/CMakeFiles/morphio_obj.dir/morphology.cpp.o src/CMakeFiles/morphio_obj.dir/mut/dendritic_spine.cpp.o src/CMakeFiles/morphio_obj.dir/mut/endoplasmic_reticulum.cpp.o src/CMakeFiles/morphio_obj.dir/mut/glial_cell.cpp.o src/CMakeFiles/morphio_obj.dir/mut/mito_section.cpp.o src/CMakeFiles/morphio_obj.dir/mut/mitochondria.cpp.o src/CMakeFiles/morphio_obj.dir/mut/modifiers.cpp.o src/CMakeFiles/morphio_obj.dir/mut/morphology.cpp.o src/CMakeFiles/morphio_obj.dir/mut/section.cpp.o src/CMakeFiles/morphio_obj.dir/mut/soma.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_asc.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_hdf5.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_swc.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_utils.cpp.o src/CMakeFiles/morphio_obj.dir/point_utils.cpp.o src/CMakeFiles/morphio_obj.dir/properties.cpp.o src/CMakeFiles/morphio_obj.dir/readers/morphologyASC.cpp.o src/CMakeFiles/morphio_obj.dir/readers/morphologyHDF5.cpp.o src/CMakeFiles/morphio_obj.dir/readers/morphologySWC.cpp.o src/CMakeFiles/morphio_obj.dir/readers/utils.cpp.o src/CMakeFiles/morphio_obj.dir/readers/vasculatureHDF5.cpp.o src/CMakeFiles/morphio_obj.dir/section.cpp.o src/CMakeFiles/morphio_obj.dir/shared_utils.cpp.o src/CMakeFiles/morphio_obj.dir/soma.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/properties.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/section.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/vasculature.cpp.o src/CMakeFiles/morphio_obj.dir/version.cpp.o src/CMakeFiles/morphio_obj.dir/warning_handling.cpp.o && /usr/bin/ranlib src/libmorphio_static.a && : [42/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_vasculature.cpp [44/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_immutable.cpp [45/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bindings_utils.cpp [46/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_warnings_exceptions.cpp [47/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_mutable.cpp [48/48] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -flto -shared -o /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o src/libmorphio_static.a -lhdf5 && cd /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313/binds/python && /usr/bin/strip /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/morphio copying build/lib.linux-x86_64-cpython-313/morphio/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio creating build/bdist.linux-x86_64/wheel/morphio/mut copying build/lib.linux-x86_64-cpython-313/morphio/mut/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio/mut creating build/bdist.linux-x86_64/wheel/morphio/vasculature copying build/lib.linux-x86_64-cpython-313/morphio/vasculature/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio/vasculature copying build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./morphio running install_egg_info running egg_info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'morphio.egg-info/SOURCES.txt' Copying morphio.egg-info to build/bdist.linux-x86_64/wheel/./morphio-3.4.0-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/morphio-3.4.0.dist-info/WHEEL creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-wheel-t0fst1r_/.tmp-t9wafsl8/morphio-3.4.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'morphio/__init__.py' adding 'morphio/_morphio.cpython-313-x86_64-linux-gnu.so' adding 'morphio/mut/__init__.py' adding 'morphio/vasculature/__init__.py' adding 'morphio-3.4.0.dist-info/AUTHORS.txt' adding 'morphio-3.4.0.dist-info/LICENSE.txt' adding 'morphio-3.4.0.dist-info/METADATA' adding 'morphio-3.4.0.dist-info/WHEEL' adding 'morphio-3.4.0.dist-info/top_level.txt' adding 'morphio-3.4.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for morphio (pyproject.toml): finished with status 'done' Created wheel for morphio: filename=morphio-3.4.0-cp313-cp313-linux_x86_64.whl size=776536 sha256=ba90b6004b92d83395a8e8b307a7f3eb4103208ab340819de7b9650c5a777ac1 Stored in directory: /builddir/.cache/pip/wheels/ee/c3/10/370becb4d63347b21ed8b192db03b5bd7c455f6dcc44ad4816 Successfully built morphio + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.7WtjpD + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + '[' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build + mkdir /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + DESTDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/collection.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/enums.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/errorMessages.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/exceptions.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/modifiers.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/soma.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/writers.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/properties.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_base.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/soma.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/types.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/properties.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/vasculature.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vector_types.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/version.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/warning_handling.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets-noconfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOConfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so.0.0.0 -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so ++ ls /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir/morphio-3.4.0-cp313-cp313-linux_x86_64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=morphio==3.4.0 + '[' -z morphio==3.4.0 ']' + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir morphio==3.4.0 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir Processing ./pyproject-wheeldir/morphio-3.4.0-cp313-cp313-linux_x86_64.whl Installing collected packages: morphio Successfully installed morphio-3.4.0 + '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --record /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD removed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD' + rm -fv /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/REQUESTED removed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc42.x86_64-pyproject-record --prefix /usr -l morphio + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 3.4.0-4.fc42 --unique-debug-suffix -3.4.0-4.fc42.x86_64 --unique-debug-src-base morphio-3.4.0-4.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/morphio-3.4.0-4.fc42.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents Scanned 34 directories and 136 files, processed 3 inodes, 3 modified (0 replaced + 3 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Nm2bpX + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j4 -VV Internal ctest changing into directory: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/DartConfiguration.tcl Test project /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: unittests 1: Test command: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/bin/unittests 1: Working Directory: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests 1: Test timeout computed to be: 10000000 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:4:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:0:warning 1: Warning: no soma found in file 1: 1: $STRING$:3:warning 1: Warning: Type changed within section, without bifurcation 1: 1: $STRING$:4:warning 1: Warning: Type changed within section, without bifurcation 1: 1: $STRING$:5:warning 1: Warning: Type changed within section, without bifurcation 1: 1: data/single_point_root.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 2 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 3 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: Skipping an attempt to write an empty morphology. 1: 1: Warning: writing file without a soma 1: 1: Warning: writing soma set to SOMA_UNDEFINED 1: 1: Soma must be stacked cylinders or a point: see https://github.com/BlueBrain/MorphIO/issues/457 1: 1: Three Point Soma: Only one column has the same coordinates. 1: 1: data/h5/v1/Neuron-no-soma.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/single-neurite.h5:0:warning 1: Warning: no soma found in file 1: Skipping LoadSWCMorphologyLocale because `std::locale` failed. 1: 1: data/markers.asc:0:warning 1: Warning: no soma found in file 1: 1: data/annotations.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: =============================================================================== 1: All tests passed (469 assertions in 60 test cases) 1: 1/1 Test #1: unittests ........................ Passed 0.04 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.04 sec ++ basename /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 + xdir=MorphIO-3.4.0 + cd .. + k='not test_v2' + k='not test_v2 and not test_neurolucida_markers' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest MorphIO-3.4.0/tests -k 'not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' -v ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 configfile: pyproject.toml collecting ... collected 171 items / 8 deselected / 163 selected MorphIO-3.4.0/tests/test_0_API.py::test_doc_exists PASSED [ 0%] MorphIO-3.4.0/tests/test_0_API.py::test_mut_immut_have_same_methods PASSED [ 1%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_empty_vasculature PASSED [ 1%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_components_vasculature PASSED [ 2%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_section_types PASSED [ 3%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_section_offsets PASSED [ 3%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_section_connectivity PASSED [ 4%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_iterators_vasculature PASSED [ 4%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_from_pathlib PASSED [ 5%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_section___str__ PASSED [ 6%] MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path0] PASSED [ 6%] MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path1] PASSED [ 7%] MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path0] PASSED [ 7%] MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path1] PASSED [ 8%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered[collection_path0] PASSED [ 9%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered[collection_path1] PASSED [ 9%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered1[collection_path0] PASSED [ 10%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered1[collection_path1] PASSED [ 11%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_with_warning_handler PASSED [ 11%] MorphIO-3.4.0/tests/test_1_swc.py::test_basic PASSED [ 12%] MorphIO-3.4.0/tests/test_1_swc.py::test_build_from_string PASSED [ 12%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_single_neurite PASSED [ 13%] MorphIO-3.4.0/tests/test_1_swc.py::test_skip_comments PASSED [ 14%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_simple PASSED [ 14%] MorphIO-3.4.0/tests/test_1_swc.py::test_set_raise_warnings PASSED [ 15%] MorphIO-3.4.0/tests/test_1_swc.py::test_repeated_id PASSED [ 15%] MorphIO-3.4.0/tests/test_1_swc.py::test_neurite_followed_by_soma PASSED [ 16%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_split_soma PASSED [ 17%] MorphIO-3.4.0/tests/test_1_swc.py::test_weird_indent PASSED [ 17%] MorphIO-3.4.0/tests/test_1_swc.py::test_cyclic PASSED [ 18%] MorphIO-3.4.0/tests/test_1_swc.py::test_simple_reversed PASSED [ 19%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_1_point PASSED [ 19%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_2_point PASSED [ 20%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_many_point PASSED [ 20%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_3_point_neuromorpho PASSED [ 21%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_3_point PASSED [ 22%] MorphIO-3.4.0/tests/test_1_swc.py::test_swc_threepoint_soma_tolerance PASSED [ 22%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_weird_ids PASSED [ 23%] MorphIO-3.4.0/tests/test_1_swc.py::test_multiple_soma PASSED [ 23%] MorphIO-3.4.0/tests/test_1_swc.py::test_disconnected_neurite PASSED [ 24%] MorphIO-3.4.0/tests/test_1_swc.py::test_neurite_wrong_root_point_neuromorpho_3_point_soma PASSED [ 25%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_duplicate PASSED [ 25%] MorphIO-3.4.0/tests/test_1_swc.py::test_unsupported_section_type PASSED [ 26%] MorphIO-3.4.0/tests/test_1_swc.py::test_three_point_soma_neuromorpho PASSED [ 26%] MorphIO-3.4.0/tests/test_1_swc.py::test_three_point_soma_stacked_cylinders PASSED [ 27%] MorphIO-3.4.0/tests/test_1_swc.py::test_trailing_space PASSED [ 28%] MorphIO-3.4.0/tests/test_1_swc.py::test_zero_diameter PASSED [ 28%] MorphIO-3.4.0/tests/test_1_swc.py::test_version PASSED [ 29%] MorphIO-3.4.0/tests/test_1_swc.py::test_no_soma PASSED [ 30%] MorphIO-3.4.0/tests/test_1_swc.py::test_throw_on_missing_data PASSED [ 30%] MorphIO-3.4.0/tests/test_1_swc.py::test_throw_on_negative_id PASSED [ 31%] MorphIO-3.4.0/tests/test_1_swc.py::test_axon_carrying_dendrite PASSED [ 31%] MorphIO-3.4.0/tests/test_1_swc.py::test_multi_type_section PASSED [ 32%] MorphIO-3.4.0/tests/test_1_swc.py::test_missing_parent PASSED [ 33%] MorphIO-3.4.0/tests/test_1_swc.py::test_extra_column PASSED [ 33%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_simple_windows_eol PASSED [ 34%] MorphIO-3.4.0/tests/test_1_swc.py::test_WarningHandlerCollector PASSED [ 34%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_soma PASSED [ 35%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_parse_number_with_plus_symbol PASSED [ 36%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_unknown_token PASSED [ 36%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_unfinished_point PASSED [ 37%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_multiple_soma PASSED [ 38%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_neurite_no_soma PASSED [ 38%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_skip_header PASSED [ 39%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_read_with_duplicates PASSED [ 39%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_read_without_duplicates PASSED [ 40%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_explicit_duplicates_with_arbitrary_diameter PASSED [ 41%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_unfinished_file PASSED [ 41%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_section_single_point PASSED [ 42%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_children PASSED [ 42%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_spine PASSED [ 43%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent PASSED [ 44%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent_complex PASSED [ 44%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_spine1 PASSED [ 45%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_markers PASSED [ 46%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_string_markers PASSED [ 46%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_invalid_incomplete PASSED [ 47%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_skip_font PASSED [ 47%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_skip_imagecoord PASSED [ 48%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_Sections_block PASSED [ 49%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_version PASSED [ 49%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_load_from_string PASSED [ 50%] MorphIO-3.4.0/tests/test_3_h5.py::test_v1 PASSED [ 50%] MorphIO-3.4.0/tests/test_3_h5.py::test_wrong_section_type PASSED [ 51%] MorphIO-3.4.0/tests/test_3_h5.py::test_soma_no_neurite PASSED [ 52%] MorphIO-3.4.0/tests/test_3_h5.py::test_single_children PASSED [ 52%] MorphIO-3.4.0/tests/test_4_immut.py::test_heterogeneous_sections PASSED [ 53%] MorphIO-3.4.0/tests/test_4_immut.py::test_components PASSED [ 53%] MorphIO-3.4.0/tests/test_4_immut.py::test_is_root PASSED [ 54%] MorphIO-3.4.0/tests/test_4_immut.py::test_distance PASSED [ 55%] MorphIO-3.4.0/tests/test_4_immut.py::test_iter PASSED [ 55%] MorphIO-3.4.0/tests/test_4_immut.py::test_section_offsets PASSED [ 56%] MorphIO-3.4.0/tests/test_4_immut.py::test_connectivity PASSED [ 57%] MorphIO-3.4.0/tests/test_4_immut.py::test_endoplasmic_reticulum PASSED [ 57%] MorphIO-3.4.0/tests/test_4_immut.py::test_section___str__ PASSED [ 58%] MorphIO-3.4.0/tests/test_4_immut.py::test_section_has_same_shape PASSED [ 58%] MorphIO-3.4.0/tests/test_4_immut.py::test_from_pathlib PASSED [ 59%] MorphIO-3.4.0/tests/test_4_immut.py::test_more_iter PASSED [ 60%] MorphIO-3.4.0/tests/test_4_immut.py::test_glia PASSED [ 60%] MorphIO-3.4.0/tests/test_4_immut.py::test_dendritic_spine PASSED [ 61%] MorphIO-3.4.0/tests/test_4_immut.py::test_dendritic_spine_add_root_section PASSED [ 61%] MorphIO-3.4.0/tests/test_5_mut.py::test_heterogeneous_sections PASSED [ 62%] MorphIO-3.4.0/tests/test_5_mut.py::test_point_level PASSED [ 63%] MorphIO-3.4.0/tests/test_5_mut.py::test_connectivity PASSED [ 63%] MorphIO-3.4.0/tests/test_5_mut.py::test_empty_neurite PASSED [ 64%] MorphIO-3.4.0/tests/test_5_mut.py::test_single_neurite PASSED [ 65%] MorphIO-3.4.0/tests/test_5_mut.py::test_child_section PASSED [ 65%] MorphIO-3.4.0/tests/test_5_mut.py::test_append_no_duplicate PASSED [ 66%] MorphIO-3.4.0/tests/test_5_mut.py::test_mut_copy_ctor PASSED [ 66%] MorphIO-3.4.0/tests/test_5_mut.py::test_build_read_only PASSED [ 67%] MorphIO-3.4.0/tests/test_5_mut.py::test_mutable_immutable_equivalence PASSED [ 68%] MorphIO-3.4.0/tests/test_5_mut.py::test_sections_are_not_dereferenced PASSED [ 68%] MorphIO-3.4.0/tests/test_5_mut.py::test_append_mutable_section PASSED [ 69%] MorphIO-3.4.0/tests/test_5_mut.py::test_iterators PASSED [ 69%] MorphIO-3.4.0/tests/test_5_mut.py::test_non_C_nparray PASSED [ 70%] MorphIO-3.4.0/tests/test_5_mut.py::test_annotation PASSED [ 71%] MorphIO-3.4.0/tests/test_5_mut.py::test_empty_sibling PASSED [ 71%] MorphIO-3.4.0/tests/test_5_mut.py::test_nested_single_child PASSED [ 72%] MorphIO-3.4.0/tests/test_5_mut.py::test_section___str__ PASSED [ 73%] MorphIO-3.4.0/tests/test_5_mut.py::test_from_pathlib PASSED [ 73%] MorphIO-3.4.0/tests/test_5_mut.py::test_endoplasmic_reticulum PASSED [ 74%] MorphIO-3.4.0/tests/test_5_mut.py::test_remove_unifurcations PASSED [ 74%] MorphIO-3.4.0/tests/test_5_mut.py::test_remove_rootsection PASSED [ 75%] MorphIO-3.4.0/tests/test_5_mut.py::test_remove_rootsection_in_loop PASSED [ 76%] MorphIO-3.4.0/tests/test_5_mut.py::test_glia PASSED [ 76%] MorphIO-3.4.0/tests/test_5_mut.py::test_glia_round_trip PASSED [ 77%] MorphIO-3.4.0/tests/test_5_mut.py::test_dendritic_spine PASSED [ 77%] MorphIO-3.4.0/tests/test_5_mut.py::test_dendritic_spine_round_trip PASSED [ 78%] MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_destroyed_morphology PASSED [ 79%] MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_access_properties_no_morphology PASSED [ 79%] MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_copy_single_section PASSED [ 80%] MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_iteration_fails_with_orphan_section PASSED [ 80%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section PASSED [ 81%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section_multiple PASSED [ 82%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__maintain_children_order_root_section PASSED [ 82%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__unifurcation_bridge PASSED [ 83%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__remove_all_children PASSED [ 84%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__append_delete PASSED [ 84%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__traversals PASSED [ 85%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_empty_file PASSED [ 85%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_undefined_soma PASSED [ 86%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma_basic PASSED [ 87%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_basic PASSED [ 87%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_merge_only_child_asc_h5 PASSED [ 88%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_merge_only_child_swc PASSED [ 88%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_perimeter PASSED [ 89%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_no_soma PASSED [ 90%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma__points_no_diameters PASSED [ 90%] MorphIO-3.4.0/tests/test_6_writers.py::test_duplicate_different_diameter PASSED [ 91%] MorphIO-3.4.0/tests/test_6_writers.py::test_single_point_root_section PASSED [ 92%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_custom_property__throws PASSED [ 92%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma_types PASSED [ 93%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma_invariants PASSED [ 93%] MorphIO-3.4.0/tests/test_6_writers.py::test_diameter_mismatch PASSED [ 94%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_no_modifier PASSED [ 95%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_nrn_order PASSED [ 95%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_nrn_order_stability PASSED [ 96%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_two_point_section PASSED [ 96%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_soma_sphere PASSED [ 97%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_no_duplicate PASSED [ 98%] MorphIO-3.4.0/tests/test_8_all_morphologies.py::test_all SKIPPED (ba...) [ 98%] MorphIO-3.4.0/tests/test_9_surfaces.py::test_stacked_cylinder PASSED [ 99%] MorphIO-3.4.0/tests/test_9_surfaces.py::test_contour PASSED [100%] ================= 162 passed, 1 skipped, 8 deselected in 0.48s ================= + RPM_EC=0 ++ jobs -p + exit 0 Processing files: morphio-3.4.0-4.fc42.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.J9Zv4n + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + LICENSEDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/LICENSE.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio + RPM_EC=0 ++ jobs -p + exit 0 Provides: libmorphio.so.0.0.0()(64bit) morphio = 3.4.0-4.fc42 morphio(x86-64) = 3.4.0-4.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: morphio-devel-3.4.0-4.fc42.x86_64 Provides: cmake(MorphIO) cmake(morphio) morphio-devel = 3.4.0-4.fc42 morphio-devel(x86-64) = 3.4.0-4.fc42 morphio-static = 3.4.0-4.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libmorphio.so.0.0.0()(64bit) Processing files: python3-morphio-3.4.0-4.fc42.x86_64 Provides: python-morphio = 3.4.0-4.fc42 python3-morphio = 3.4.0-4.fc42 python3-morphio(x86-64) = 3.4.0-4.fc42 python3.13-morphio = 3.4.0-4.fc42 python3.13dist(morphio) = 3.4 python3dist(morphio) = 3.4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.14.1 rtld(GNU_HASH) Processing files: morphio-doc-3.4.0-4.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.C0XQCF + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + DOCDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/AUTHORS.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/CHANGELOG.md /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/CONTRIBUTING.md /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/README.rst /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/examples /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.t435gK + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + LICENSEDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/LICENSE.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: morphio-doc = 3.4.0-4.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debugsource-3.4.0-4.fc42.x86_64 Provides: morphio-debugsource = 3.4.0-4.fc42 morphio-debugsource(x86-64) = 3.4.0-4.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debuginfo-3.4.0-4.fc42.x86_64 Provides: debuginfo(build-id) = 21f88e2ce2fb6fe7b19af788afcae626be0ba542 libmorphio.so.0.0.0-3.4.0-4.fc42.x86_64.debug()(64bit) morphio-debuginfo = 3.4.0-4.fc42 morphio-debuginfo(x86-64) = 3.4.0-4.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: morphio-debugsource(x86-64) = 3.4.0-4.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc42.src.rpm Wrote: /builddir/build/RPMS/morphio-debugsource-3.4.0-4.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-devel-3.4.0-4.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-doc-3.4.0-4.fc42.noarch.rpm Wrote: /builddir/build/RPMS/morphio-3.4.0-4.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-morphio-3.4.0-4.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-debuginfo-3.4.0-4.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.DyJb7n + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + test -d /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.4.0-build + rm -rf /builddir/build/BUILD/morphio-3.4.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild morphio-3.4.0-4.fc42.src.rpm Finish: build phase for morphio-3.4.0-4.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1732210666.501820/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/morphio-3.4.0-4.fc42.src.rpm) Config(child) 2 minutes 56 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "morphio-debuginfo", "epoch": null, "version": "3.4.0", "release": "4.fc42", "arch": "x86_64" }, { "name": "morphio-devel", "epoch": null, "version": "3.4.0", "release": "4.fc42", "arch": "x86_64" }, { "name": "python3-morphio", "epoch": null, "version": "3.4.0", "release": "4.fc42", "arch": "x86_64" }, { "name": "morphio", "epoch": null, "version": "3.4.0", "release": "4.fc42", "arch": "src" }, { "name": "morphio-debugsource", "epoch": null, "version": "3.4.0", "release": "4.fc42", "arch": "x86_64" }, { "name": "morphio-doc", "epoch": null, "version": "3.4.0", "release": "4.fc42", "arch": "noarch" }, { "name": "morphio", "epoch": null, "version": "3.4.0", "release": "4.fc42", "arch": "x86_64" } ] } RPMResults finished