## START: Set by rpmautospec ## (rpmautospec version 0.7.3) ## RPMAUTOSPEC: autorelease, autochangelog %define autorelease(e:s:pb:n) %{?-p:0.}%{lua: release_number = 1; base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}")); print(release_number + base_release_number - 1); }%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}} ## END: Set by rpmautospec # Run test suites upstream runs by default. Tests disabled here are # optional and not run when running `test.py` without any arguments. # Tests are listed in the order they appear in `test.py`. # unit tests for pynwb package %bcond test_pynwb 1 # integration tests %bcond test_integration 1 # example tests # Some tests require network, others additional unavailable modules %bcond test_example 0 # example tests with ros3 streaming # Internet access required (automatically disabled without it) %bcond test_example_ros3 0 # backwards compatibility tests %bcond test_backwards 1 # example tests and validation tests on example NWB files %bcond test_validate_examples 0 # ros3 streaming tests # Internet access required (automatically disabled without it) %bcond test_ros3 0 # tests on pynwb.validate # some tests fail for unknown reasons (more since 2.7.0) %bcond test_validation_module 0 Name: python-pynwb Version: 2.8.3 Release: %autorelease Summary: Package for working with Neurodata stored in the NWB format # The entire source is BSD-3-Clause-LBNL, except: # # Unlicense: # - versioneer.py, a bundled and amalgamated copy of python3dist(versioneer), # is not distributed in the binary RPMs, but the _version.py it generates # is, and shares the same license License: BSD-3-Clause-LBNL AND Unlicense URL: https://github.com/NeurodataWithoutBorders/pynwb # Use the pypi tar because GitHub tar does not include the required git-submodules Source: %{pypi_source pynwb} BuildArch: noarch %global desc %{expand: PyNWB is a Python package for working with NWB files. It provides a high-level API for efficiently working with Neurodata stored in the NWB format. https://pynwb.readthedocs.io/en/latest/} %description %{desc} %package -n python3-pynwb Summary: %{summary} BuildRequires: python3-devel BuildRequires: python3-pytest # Required for tests, not listed in requirements*.txt BuildRequires: python3-matplotlib %description -n python3-pynwb %{desc} %prep %autosetup -n pynwb-%{version} -p1 # https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_linters sed -r -i 's@"coverage", "run", "-p"@"%{python3}"@' \ tests/validation/test_validate.py sed -r -i 's/==.*//' requirements.txt | tee requirements-unpinned.txt #sed -i -e "s/h5py>.*'/h5py'/" -e "s/numpy>.*'/numpy'/" -e "s/pandas>.*'/pandas'/" setup.py # TODO: Why does this happen? It seems like it is an issue with our test # environment rather than a real bug. # # AssertionError: "<frozen runpy>:128: # RuntimeWarning: 'pyn[151 chars]ur\n" != '' # - <frozen runpy>:128: RuntimeWarning: 'pynwb.validate' found in sys.modules # after import of package 'pynwb', but prior to execution of # 'pynwb.validate'; this may result in unpredictable behaviour sed -r -i '1{s/^/from unittest import skip\n/}' \ tests/validation/test_validate.py for n in \ test_validate_file_cached \ test_validate_file_cached_extension \ test_validate_file_cached_extension_pass_ns \ test_validate_file_cached_ignore \ test_validate_file_list_namespaces_core \ test_validate_file_list_namespaces_extension do sed -r -i \ "s/^([[:blank:]]*)(def $n\()/\1@skip('Re-import issues')\n\1\2/" \ tests/validation/test_validate.py done %generate_buildrequires %pyproject_buildrequires requirements-unpinned.txt %build %pyproject_wheel %install %pyproject_install %pyproject_save_files pynwb %check # Generate test files %{py3_test_envvars} %{python3} src/pynwb/testing/make_test_files.py # See skips added in %%prep. %{py3_test_envvars} %{python3} test.py \ %if %{with test_backwards} --backwards \ %endif %if %{with test_example} --example \ %endif %if %{with test_example_ros3} --example-ros3 \ %endif %if %{with test_integration} --integration \ %endif %if %{with test_pynwb} --pynwb \ %endif %if %{with test_ros3} --ros3 \ %endif %if %{with test_validate_examples} --validate-examples \ %endif %if %{with test_validation_module} --validation-module \ %endif --verbose %files -n python3-pynwb -f %{pyproject_files} %license license.txt %doc README.rst %changelog ## START: Generated by rpmautospec * Fri Dec 13 2024 Sandro <devel@penguinpee.nl> - 2.8.3-1 - Update to 2.8.3 - Close RHBZ#2332199 (NumPy 2.x) * Fri Jul 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Mon Jun 17 2024 Python Maint <python-maint@redhat.com> - 2.7.0-3 - Rebuilt for Python 3.13 * Mon May 13 2024 Sandro <devel@penguinpee.nl> - 2.7.0-2 - Add Packit config * Mon May 13 2024 Sandro <devel@penguinpee.nl> - 2.7.0-1 - Update to 2.7.0 - Works with pytest >= 8 (RHBZ#2275107) * Fri Jan 26 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.5.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.5.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Mon Oct 16 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 2.5.0-3 - Use %%{py3_test_envvars} to set up test environment * Thu Oct 05 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 2.5.0-2 - Patch for python-hdmf 3.10.0 compatibility * Thu Oct 05 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 2.5.0-1 - Update to 2.5.0 * Fri Jul 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.3.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Sun Jul 16 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 2.3.3-1 - Update to 2.3.3 (fix RHBZ#2220438) - Update License to SPDX * Thu Jul 13 2023 Python Maint <python-maint@redhat.com> - 2.1.0-3 - Rebuilt for Python 3.12 * Fri Jan 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.1.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Mon Aug 15 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 2.1.0-1 - feat: update to 2.1.0 (fixes rhbz#2113648) * Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.0.0-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Fri Jan 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.0.0-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Sun Jan 16 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 2.0.0-6 - feat: clean up spec file - move to pyproject macros - unpin dep versions * Fri Aug 27 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 2.0.0-4 - Also disable test on ppc64le where it fails too * Fri Aug 27 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 2.0.0-3 - Disable failing test on F34 only * Fri Aug 27 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 2.0.0-2 - Disable tests that fails on s390x * Mon Aug 16 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 2.0.0-1 - Update to latest release * Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.4.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 1.4.0-3 - Rebuilt for Python 3.10 * Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.4.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Sat Aug 22 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.4.0-1 - Update to 1.4.0 * Sun Aug 09 2020 Luis Bazan <lbazan@fedoraproject.org> - 1.3.3-1 - New upstream version * Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.2.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Tue May 26 2020 Miro HronÄok <mhroncok@redhat.com> - 1.2.1-2 - Rebuilt for Python 3.9 * Sun Feb 16 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.2.1-1 - Update to new release * Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.2-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Jan 9 2020 Zbigniew JÄ™drzejewski-Szmek <zbyszek@in.waw.pl> - 1.1.2-2 - Remove dependency on unittest2 (#1789200) * Fri Oct 25 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.1.2-1 - Update to 1.1.2 * Tue Sep 24 2019 Luis Bazan <lbazan@fedoraproject.org> - 1.1.0-2 - disable test * Mon Sep 23 2019 Luis Bazan <lbazan@fedoraproject.org> - 1.1.0-1 - New upstream version * Mon Aug 19 2019 Miro HronÄok <mhroncok@redhat.com> - 1.0.3-2 - Rebuilt for Python 3.8 * Thu Jul 25 2019 Luis Bazan <lbazan@fedoraproject.org> - 1.0.3-1 - New upstream version * Mon Apr 22 2019 Luis Bazan <lbazan@fedoraproject.org> - 1.0.2-1 - New upstream version * Mon Apr 15 2019 Luis Bazan <lbazan@fedoraproject.org> - 1.0.1-2 - remove py2 * Mon Apr 15 2019 Luis Bazan <lbazan@fedoraproject.org> - 1.0.1-1 - New upstream version * Sat Feb 02 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.6.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Mon Nov 26 2018 Luis Bazan <lbazan@fedoraproject.org> - 0.6.1-3 - Add buildrequires - Enable tests (thanks Ankur) * Mon Nov 26 2018 Luis Bazan <lbazan@fedoraproject.org> - 0.6.1-2 - Fix comment 2 in BZ 1651365 * Mon Nov 26 2018 Luis Bazan <lbazan@fedoraproject.org> - 0.6.1-1 - New upstream ## END: Generated by rpmautospec