Warning: Permanently added '54.83.92.182' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7354147-fedora-39-aarch64 --chroot fedora-39-aarch64 Version: 0.72 PID: 22770 Logging PID: 22771 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7354147, 'buildroot_pkgs': [], 'chroot': 'fedora-39-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '866b2a2e0edee64ab343c8e71dbef52319db1d02', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Biostrings', 'package_version': '2.64.1-8', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-39-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/iucar', 'tags': [], 'task_id': '7354147-fedora-39-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings /var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings', '/var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings'... Running: git checkout 866b2a2e0edee64ab343c8e71dbef52319db1d02 -- cmd: ['git', 'checkout', '866b2a2e0edee64ab343c8e71dbef52319db1d02', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings rc: 0 stdout: stderr: Note: switching to '866b2a2e0edee64ab343c8e71dbef52319db1d02'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 866b2a2 automatic import of R-Biostrings Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Biostrings_2.64.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Biostrings_2.64.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-Biostrings/Biostrings_2.64.1.tar.gz/md5/71a78d5b184e315b7d4565f783f35d6e/Biostrings_2.64.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 11.8M 100 11.8M 0 0 210M 0 --:--:-- --:--:-- --:--:-- 211M INFO: Reading stdout from command: md5sum Biostrings_2.64.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings/R-Biostrings.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714053004.338640 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings/R-Biostrings.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714053004.338640 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings/R-Biostrings.spec) Config(fedora-39-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-aarch64-bootstrap-1714053004.338640/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-aarch64-bootstrap-1714053004.338640/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/0487f2331bb10cd32f84bb4290537300130d53fd3384d787bbce094b9945e7f7/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/0487f2331bb10cd32f84bb4290537300130d53fd3384d787bbce094b9945e7f7/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 192 MB/s | 17 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 134 MB/s | 74 MB 00:00 fedora 54 MB/s | 86 MB 00:01 updates 53 MB/s | 34 MB 00:00 Last metadata expiration check: 0:00:03 ago on Thu Apr 25 13:50:46 2024. Package python3-dnf-4.19.2-1.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing: python3-dnf-plugins-core noarch 4.6.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 491 k dnf-data noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k python3-dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 553 k yum noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs aarch64 1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156 k python3-dateutil noarch 1:2.8.2-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus aarch64 1.3.2-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k python3-distro noarch 1.9.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k python3-six noarch 1.16.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd aarch64 235-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k Transaction Summary ========================================================================================================================== Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): python3-dbus-1.3.2-6.fc40.aarch64.rpm 1.5 MB/s | 146 kB 00:00 (2/11): python3-distro-1.9.0-3.fc40.noarch.rpm 3.2 MB/s | 45 kB 00:00 (3/11): dbus-libs-1.14.10-3.fc40.aarch64.rpm 1.3 MB/s | 156 kB 00:00 (4/11): python3-six-1.16.0-14.fc40.noarch.rpm 2.7 MB/s | 41 kB 00:00 (5/11): python3-dateutil-2.8.2-13.fc40.noarch.r 2.5 MB/s | 345 kB 00:00 (6/11): python3-dnf-plugins-core-4.6.0-1.fc41.n 9.1 MB/s | 302 kB 00:00 (7/11): python3-systemd-235-9.fc40.aarch64.rpm 4.3 MB/s | 101 kB 00:00 (8/11): dnf-data-4.19.2-1.fc41.noarch.rpm 2.6 MB/s | 40 kB 00:00 (9/11): dnf-4.19.2-1.fc41.noarch.rpm 14 MB/s | 491 kB 00:00 (10/11): yum-4.19.2-1.fc41.noarch.rpm 2.7 MB/s | 37 kB 00:00 (11/11): python3-dnf-4.19.2-1.fc41.noarch.rpm 16 MB/s | 553 kB 00:00 -------------------------------------------------------------------------------- Total 12 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.19.2-1.fc41.noarch 1/15 Upgrading : python3-dnf-4.19.2-1.fc41.noarch 2/15 Upgrading : dnf-4.19.2-1.fc41.noarch 3/15 Running scriptlet: dnf-4.19.2-1.fc41.noarch 3/15 Installing : python3-systemd-235-9.fc40.aarch64 4/15 Installing : python3-six-1.16.0-14.fc40.noarch 5/15 Installing : python3-dateutil-1:2.8.2-13.fc40.noarch 6/15 Installing : python3-distro-1.9.0-3.fc40.noarch 7/15 Installing : dbus-libs-1:1.14.10-3.fc40.aarch64 8/15 Installing : python3-dbus-1.3.2-6.fc40.aarch64 9/15 Installing : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 10/15 Upgrading : yum-4.19.2-1.fc41.noarch 11/15 Cleanup : yum-4.19.2-1.fc39.noarch 12/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : dnf-4.19.2-1.fc39.noarch 13/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : python3-dnf-4.19.2-1.fc39.noarch 14/15 Cleanup : dnf-data-4.19.2-1.fc39.noarch 15/15 Running scriptlet: dnf-data-4.19.2-1.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-3.fc40.aarch64 1/15 Verifying : python3-dateutil-1:2.8.2-13.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-6.fc40.aarch64 3/15 Verifying : python3-distro-1.9.0-3.fc40.noarch 4/15 Verifying : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 5/15 Verifying : python3-six-1.16.0-14.fc40.noarch 6/15 Verifying : python3-systemd-235-9.fc40.aarch64 7/15 Verifying : dnf-4.19.2-1.fc41.noarch 8/15 Verifying : dnf-4.19.2-1.fc39.noarch 9/15 Verifying : dnf-data-4.19.2-1.fc41.noarch 10/15 Verifying : dnf-data-4.19.2-1.fc39.noarch 11/15 Verifying : python3-dnf-4.19.2-1.fc41.noarch 12/15 Verifying : python3-dnf-4.19.2-1.fc39.noarch 13/15 Verifying : yum-4.19.2-1.fc41.noarch 14/15 Verifying : yum-4.19.2-1.fc39.noarch 15/15 Upgraded: dnf-4.19.2-1.fc41.noarch dnf-data-4.19.2-1.fc41.noarch python3-dnf-4.19.2-1.fc41.noarch yum-4.19.2-1.fc41.noarch Installed: dbus-libs-1:1.14.10-3.fc40.aarch64 python3-dateutil-1:2.8.2-13.fc40.noarch python3-dbus-1.3.2-6.fc40.aarch64 python3-distro-1.9.0-3.fc40.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch python3-six-1.16.0-14.fc40.noarch python3-systemd-235-9.fc40.aarch64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-aarch64-1714053004.338640/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.aarch64 rpm-sequoia-1.6.0-1.fc39.aarch64 python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 48 kB/s | 1.5 kB 00:00 Copr repository 157 MB/s | 17 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 61 kB/s | 3.8 kB 00:00 fedora 165 kB/s | 14 kB 00:00 updates 284 kB/s | 12 kB 00:00 Dependencies resolved. ========================================================================================================================================= Package Arch Version Repository Size ========================================================================================================================================= Installing group/module packages: bash aarch64 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 aarch64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52 k coreutils aarch64 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M cpio aarch64 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285 k diffutils aarch64 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 395 k fedora-release-common noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k findutils aarch64 1:4.9.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 489 k gawk aarch64 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M glibc-minimal-langpack aarch64 2.39.9000-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 109 k grep aarch64 3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 288 k gzip aarch64 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163 k info aarch64 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183 k patch aarch64 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130 k redhat-rpm-config noarch 288-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k rpm-build aarch64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 72 k sed aarch64 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 307 k shadow-utils aarch64 2:4.15.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M tar aarch64 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 848 k unzip aarch64 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 185 k util-linux aarch64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M which aarch64 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k xz aarch64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 533 k Installing dependencies: alternatives aarch64 1.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs aarch64 4.0.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126 k authselect aarch64 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141 k authselect-libs aarch64 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 205 k basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils aarch64 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.8 M binutils-gold aarch64 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 968 k bzip2-libs aarch64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 862 k coreutils-common aarch64 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib aarch64 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k crypto-policies noarch 20240320-1.git58e3d95.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65 k curl aarch64 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 306 k cyrus-sasl-lib aarch64 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 779 k debugedit aarch64 5.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79 k dwz aarch64 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137 k ed aarch64 1.20.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81 k efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils aarch64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 562 k elfutils-debuginfod-client aarch64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k elfutils-default-yama-scope noarch 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf aarch64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209 k elfutils-libs aarch64 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 264 k fedora-gpg-keys noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k fedora-release noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k fedora-release-identity-basic noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 k fedora-repos noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.3 k fedora-repos-rawhide noarch 41-0.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.9 k file aarch64 5.45-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50 k file-libs aarch64 5.45-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 763 k filesystem aarch64 3.18-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M fonts-srpm-macros noarch 1:2.0.5-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27 k forge-srpm-macros noarch 0.3.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19 k fpc-srpm-macros noarch 1.3-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 k gdb-minimal aarch64 14.2-5.fc41 copr_base 4.1 M gdbm aarch64 1:1.23-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149 k gdbm-libs aarch64 1:1.23-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 56 k ghc-srpm-macros noarch 1.9.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.0 k glibc aarch64 2.39.9000-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 M glibc-common aarch64 2.39.9000-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 387 k glibc-gconv-extra aarch64 2.39.9000-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 M gmp aarch64 1:6.3.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 270 k gnat-srpm-macros noarch 6-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.8 k go-srpm-macros noarch 3.6.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28 k jansson aarch64 2.13.1-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 46 k kernel-srpm-macros noarch 1.0-23.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.8 k keyutils-libs aarch64 1.6.3-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32 k krb5-libs aarch64 1.21.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 768 k libacl aarch64 2.3.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25 k libarchive aarch64 3.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 405 k libattr aarch64 2.5.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k libblkid aarch64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126 k libbrotli aarch64 1.1.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 346 k libcap aarch64 2.69-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 87 k libcap-ng aarch64 0.8.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32 k libcom_err aarch64 1.47.0-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25 k libcurl aarch64 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 350 k libeconf aarch64 0.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32 k libevent aarch64 2.1.12-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255 k libfdisk aarch64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 157 k libffi aarch64 3.4.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k libgcc aarch64 14.0.1-0.15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 109 k libgomp aarch64 14.0.1-0.15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 336 k libidn2 aarch64 2.3.7-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113 k libmount aarch64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 154 k libnghttp2 aarch64 1.61.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 77 k libnsl2 aarch64 2.0.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30 k libpkgconf aarch64 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k libpsl aarch64 0.21.5-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64 k libpwquality aarch64 1.4.5-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 109 k libselinux aarch64 3.6-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88 k libsemanage aarch64 3.6-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 115 k libsepol aarch64 3.6-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 327 k libsmartcols aarch64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k libssh aarch64 0.10.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214 k libssh-config noarch 0.10.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.1 k libstdc++ aarch64 14.0.1-0.15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 825 k libtasn1 aarch64 4.19.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 73 k libtirpc aarch64 1.3.4-1.rc3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 94 k libtool-ltdl aarch64 2.4.7-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k libunistring aarch64 1.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 544 k libutempter aarch64 1.2.1-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27 k libuuid aarch64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28 k libverto aarch64 0.3.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k libxcrypt aarch64 4.4.36-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123 k libxml2 aarch64 2.12.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 687 k libzstd aarch64 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 287 k lua-libs aarch64 5.4.6-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 131 k lua-srpm-macros noarch 1-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.7 k lz4-libs aarch64 1.9.4-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68 k mpfr aarch64 4.2.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 324 k ncurses-base noarch 6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64 k ncurses-libs aarch64 6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329 k ocaml-srpm-macros noarch 9-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.1 k openblas-srpm-macros noarch 2-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.7 k openldap aarch64 2.6.7-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 252 k openssl-libs aarch64 1:3.2.1-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 M p11-kit aarch64 0.25.3-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 486 k p11-kit-trust aarch64 0.25.3-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 142 k package-notes-srpm-macros noarch 0.5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 k pam aarch64 1.6.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 527 k pam-libs aarch64 1.6.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57 k pcre2 aarch64 10.43-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 226 k pcre2-syntax noarch 10.43-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149 k perl-srpm-macros noarch 1-53.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.4 k pkgconf aarch64 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k pkgconf-m4 noarch 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 k pkgconf-pkg-config aarch64 2.1.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.7 k popt aarch64 1.19-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60 k publicsuffix-list-dafsa noarch 20240107-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 58 k pyproject-srpm-macros noarch 1.12.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 k python-srpm-macros noarch 3.12-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24 k qt5-srpm-macros noarch 5.15.13-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.5 k qt6-srpm-macros noarch 6.7.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.0 k readline aarch64 8.2-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 213 k rpm aarch64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 508 k rpm-build-libs aarch64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 92 k rpm-libs aarch64 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 306 k rpm-sequoia aarch64 1.6.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 817 k rust-srpm-macros noarch 26.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k setup noarch 2.14.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 148 k sqlite-libs aarch64 3.45.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 706 k systemd-libs aarch64 255.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694 k util-linux-core aarch64 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 519 k xxhash-libs aarch64 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34 k xz-libs aarch64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 108 k zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 k zip aarch64 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 263 k zlib-ng-compat aarch64 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66 k zstd aarch64 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 457 k Installing Groups: Buildsystem building group Transaction Summary ========================================================================================================================================= Install 153 Packages Total size: 52 M Installed size: 307 M Downloading Packages: [SKIPPED] gdb-minimal-14.2-5.fc41.aarch64.rpm: Already downloaded [SKIPPED] alternatives-1.26-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-15.fc41.noarch.rpm: Already downloaded [SKIPPED] audit-libs-4.0.1-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] authselect-1.5.0-5.fc41.aarch64.rpm: Already downloaded [SKIPPED] authselect-libs-1.5.0-5.fc41.aarch64.rpm: Already downloaded [SKIPPED] basesystem-11-20.fc40.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.26-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] binutils-2.42.50-6.fc41.aarch64.rpm: Already downloaded [SKIPPED] binutils-gold-2.42.50-6.fc41.aarch64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-18.fc40.aarch64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-18.fc40.aarch64.rpm: 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elfutils-debuginfod-client-0.191-7.fc41.aarch64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.191-7.fc41.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.191-7.fc41.aarch64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.191-7.fc41.aarch64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-41-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-release-41-0.9.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-41-0.9.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-41-0.9.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-41-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-41-0.1.noarch.rpm: Already downloaded [SKIPPED] file-5.45-5.fc41.aarch64.rpm: Already downloaded [SKIPPED] file-libs-5.45-5.fc41.aarch64.rpm: Already downloaded [SKIPPED] filesystem-3.18-9.fc41.aarch64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-14.fc40.noarch.rpm: Already downloaded [SKIPPED] forge-srpm-macros-0.3.1-1.fc41.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-12.fc40.noarch.rpm: Already downloaded [SKIPPED] gawk-5.3.0-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] gdbm-1.23-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.9.1-1.fc41.noarch.rpm: Already downloaded [SKIPPED] glibc-2.39.9000-14.fc41.aarch64.rpm: Already downloaded [SKIPPED] glibc-common-2.39.9000-14.fc41.aarch64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.39.9000-14.fc41.aarch64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.39.9000-14.fc41.aarch64.rpm: Already downloaded [SKIPPED] gmp-6.3.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-6-5.fc40.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.6.0-1.fc41.noarch.rpm: Already downloaded [SKIPPED] grep-3.11-7.fc40.aarch64.rpm: Already downloaded [SKIPPED] gzip-1.13-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] info-7.1-2.fc40.aarch64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-9.fc40.aarch64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-23.fc41.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.3-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] krb5-libs-1.21.2-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] libacl-2.3.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libarchive-3.7.2-3.fc41.aarch64.rpm: Already downloaded [SKIPPED] libattr-2.5.2-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libblkid-2.40-13.fc41.aarch64.rpm: Already downloaded [SKIPPED] libbrotli-1.1.0-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libcap-2.69-8.fc41.aarch64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.5-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libcom_err-1.47.0-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] libcurl-8.7.1-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libeconf-0.6.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-12.fc40.aarch64.rpm: Already downloaded [SKIPPED] libfdisk-2.40-13.fc41.aarch64.rpm: Already downloaded [SKIPPED] libffi-3.4.6-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libgcc-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] libgomp-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] libidn2-2.3.7-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libmount-2.40-13.fc41.aarch64.rpm: Already downloaded [SKIPPED] libnghttp2-1.61.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libpkgconf-2.1.0-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libpsl-0.21.5-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-9.fc40.aarch64.rpm: Already downloaded [SKIPPED] libselinux-3.6-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] libsemanage-3.6-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libsepol-3.6-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libsmartcols-2.40-13.fc41.aarch64.rpm: Already downloaded [SKIPPED] libssh-0.10.6-6.fc41.aarch64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.6-6.fc41.noarch.rpm: Already downloaded [SKIPPED] libstdc++-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.4-1.rc3.fc41.aarch64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-10.fc40.aarch64.rpm: Already downloaded [SKIPPED] libunistring-1.1-7.fc41.aarch64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-13.fc40.aarch64.rpm: Already downloaded [SKIPPED] libuuid-2.40-13.fc41.aarch64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.36-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] libxml2-2.12.6-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libzstd-1.5.6-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] 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rpm-build-4.19.1.1-1.fc40.aarch64 149/153 Installing : pyproject-srpm-macros-1.12.0-1.fc40.noarch 150/153 Installing : util-linux-2.40-13.fc41.aarch64 151/153 Running scriptlet: util-linux-2.40-13.fc41.aarch64 151/153 Installing : which-2.21-41.fc40.aarch64 152/153 Installing : info-7.1-2.fc40.aarch64 153/153 Running scriptlet: filesystem-3.18-9.fc41.aarch64 153/153 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.5.0-5.fc41.aarch64 153/153 Running scriptlet: rpm-4.19.1.1-1.fc40.aarch64 153/153 Running scriptlet: info-7.1-2.fc40.aarch64 153/153 Installed: alternatives-1.26-3.fc40.aarch64 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.aarch64 authselect-1.5.0-5.fc41.aarch64 authselect-libs-1.5.0-5.fc41.aarch64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.aarch64 binutils-2.42.50-6.fc41.aarch64 binutils-gold-2.42.50-6.fc41.aarch64 bzip2-1.0.8-18.fc40.aarch64 bzip2-libs-1.0.8-18.fc40.aarch64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.aarch64 coreutils-common-9.5-1.fc41.aarch64 cpio-2.15-1.fc40.aarch64 cracklib-2.9.11-5.fc40.aarch64 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.aarch64 cyrus-sasl-lib-2.1.28-19.fc40.aarch64 debugedit-5.0-14.fc40.aarch64 diffutils-3.10-5.fc40.aarch64 dwz-0.15-6.fc40.aarch64 ed-1.20.2-1.fc41.aarch64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.aarch64 elfutils-debuginfod-client-0.191-7.fc41.aarch64 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.aarch64 elfutils-libs-0.191-7.fc41.aarch64 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.aarch64 file-libs-5.45-5.fc41.aarch64 filesystem-3.18-9.fc41.aarch64 findutils-1:4.9.0-8.fc40.aarch64 fonts-srpm-macros-1:2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.aarch64 gdb-minimal-14.2-5.fc41.aarch64 gdbm-1:1.23-6.fc40.aarch64 gdbm-libs-1:1.23-6.fc40.aarch64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-14.fc41.aarch64 glibc-common-2.39.9000-14.fc41.aarch64 glibc-gconv-extra-2.39.9000-14.fc41.aarch64 glibc-minimal-langpack-2.39.9000-14.fc41.aarch64 gmp-1:6.3.0-1.fc41.aarch64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.aarch64 gzip-1.13-1.fc40.aarch64 info-7.1-2.fc40.aarch64 jansson-2.13.1-9.fc40.aarch64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.aarch64 krb5-libs-1.21.2-5.fc40.aarch64 libacl-2.3.2-1.fc40.aarch64 libarchive-3.7.2-3.fc41.aarch64 libattr-2.5.2-3.fc40.aarch64 libblkid-2.40-13.fc41.aarch64 libbrotli-1.1.0-3.fc40.aarch64 libcap-2.69-8.fc41.aarch64 libcap-ng-0.8.5-1.fc41.aarch64 libcom_err-1.47.0-5.fc40.aarch64 libcurl-8.7.1-1.fc41.aarch64 libeconf-0.6.2-1.fc41.aarch64 libevent-2.1.12-12.fc40.aarch64 libfdisk-2.40-13.fc41.aarch64 libffi-3.4.6-1.fc41.aarch64 libgcc-14.0.1-0.15.fc41.aarch64 libgomp-14.0.1-0.15.fc41.aarch64 libidn2-2.3.7-1.fc40.aarch64 libmount-2.40-13.fc41.aarch64 libnghttp2-1.61.0-1.fc41.aarch64 libnsl2-2.0.1-1.fc40.aarch64 libpkgconf-2.1.0-1.fc40.aarch64 libpsl-0.21.5-3.fc40.aarch64 libpwquality-1.4.5-9.fc40.aarch64 libselinux-3.6-4.fc40.aarch64 libsemanage-3.6-3.fc40.aarch64 libsepol-3.6-3.fc40.aarch64 libsmartcols-2.40-13.fc41.aarch64 libssh-0.10.6-6.fc41.aarch64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.aarch64 libtasn1-4.19.0-6.fc40.aarch64 libtirpc-1.3.4-1.rc3.fc41.aarch64 libtool-ltdl-2.4.7-10.fc40.aarch64 libunistring-1.1-7.fc41.aarch64 libutempter-1.2.1-13.fc40.aarch64 libuuid-2.40-13.fc41.aarch64 libverto-0.3.2-8.fc40.aarch64 libxcrypt-4.4.36-5.fc40.aarch64 libxml2-2.12.6-1.fc41.aarch64 libzstd-1.5.6-1.fc41.aarch64 lua-libs-5.4.6-5.fc40.aarch64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.aarch64 mpfr-4.2.1-3.fc40.aarch64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.aarch64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.aarch64 openssl-libs-1:3.2.1-6.fc41.aarch64 p11-kit-0.25.3-4.fc40.aarch64 p11-kit-trust-0.25.3-4.fc40.aarch64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.aarch64 pam-libs-1.6.1-1.fc41.aarch64 patch-2.7.6-24.fc40.aarch64 pcre2-10.43-1.fc41.aarch64 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.aarch64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.aarch64 popt-1.19-6.fc40.aarch64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.aarch64 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.aarch64 rpm-build-4.19.1.1-1.fc40.aarch64 rpm-build-libs-4.19.1.1-1.fc40.aarch64 rpm-libs-4.19.1.1-1.fc40.aarch64 rpm-sequoia-1.6.0-2.fc40.aarch64 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.aarch64 setup-2.14.5-2.fc40.noarch shadow-utils-2:4.15.1-2.fc41.aarch64 sqlite-libs-3.45.2-1.fc41.aarch64 systemd-libs-255.5-1.fc41.aarch64 tar-2:1.35-3.fc40.aarch64 unzip-6.0-63.fc40.aarch64 util-linux-2.40-13.fc41.aarch64 util-linux-core-2.40-13.fc41.aarch64 which-2.21-41.fc40.aarch64 xxhash-libs-0.8.2-2.fc40.aarch64 xz-1:5.4.6-3.fc41.aarch64 xz-libs-1:5.4.6-3.fc41.aarch64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.aarch64 zlib-ng-compat-2.1.6-2.fc40.aarch64 zstd-1.5.6-1.fc41.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.aarch64 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.aarch64 authselect-1.5.0-5.fc41.aarch64 authselect-libs-1.5.0-5.fc41.aarch64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.aarch64 binutils-2.42.50-6.fc41.aarch64 binutils-gold-2.42.50-6.fc41.aarch64 bzip2-1.0.8-18.fc40.aarch64 bzip2-libs-1.0.8-18.fc40.aarch64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.aarch64 coreutils-common-9.5-1.fc41.aarch64 cpio-2.15-1.fc40.aarch64 cracklib-2.9.11-5.fc40.aarch64 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.aarch64 cyrus-sasl-lib-2.1.28-19.fc40.aarch64 debugedit-5.0-14.fc40.aarch64 diffutils-3.10-5.fc40.aarch64 dwz-0.15-6.fc40.aarch64 ed-1.20.2-1.fc41.aarch64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.aarch64 elfutils-debuginfod-client-0.191-7.fc41.aarch64 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.aarch64 elfutils-libs-0.191-7.fc41.aarch64 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.aarch64 file-libs-5.45-5.fc41.aarch64 filesystem-3.18-9.fc41.aarch64 findutils-4.9.0-8.fc40.aarch64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.aarch64 gdb-minimal-14.2-5.fc41.aarch64 gdbm-1.23-6.fc40.aarch64 gdbm-libs-1.23-6.fc40.aarch64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-14.fc41.aarch64 glibc-common-2.39.9000-14.fc41.aarch64 glibc-gconv-extra-2.39.9000-14.fc41.aarch64 glibc-minimal-langpack-2.39.9000-14.fc41.aarch64 gmp-6.3.0-1.fc41.aarch64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.aarch64 gzip-1.13-1.fc40.aarch64 info-7.1-2.fc40.aarch64 jansson-2.13.1-9.fc40.aarch64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.aarch64 krb5-libs-1.21.2-5.fc40.aarch64 libacl-2.3.2-1.fc40.aarch64 libarchive-3.7.2-3.fc41.aarch64 libattr-2.5.2-3.fc40.aarch64 libblkid-2.40-13.fc41.aarch64 libbrotli-1.1.0-3.fc40.aarch64 libcap-2.69-8.fc41.aarch64 libcap-ng-0.8.5-1.fc41.aarch64 libcom_err-1.47.0-5.fc40.aarch64 libcurl-8.7.1-1.fc41.aarch64 libeconf-0.6.2-1.fc41.aarch64 libevent-2.1.12-12.fc40.aarch64 libfdisk-2.40-13.fc41.aarch64 libffi-3.4.6-1.fc41.aarch64 libgcc-14.0.1-0.15.fc41.aarch64 libgomp-14.0.1-0.15.fc41.aarch64 libidn2-2.3.7-1.fc40.aarch64 libmount-2.40-13.fc41.aarch64 libnghttp2-1.61.0-1.fc41.aarch64 libnsl2-2.0.1-1.fc40.aarch64 libpkgconf-2.1.0-1.fc40.aarch64 libpsl-0.21.5-3.fc40.aarch64 libpwquality-1.4.5-9.fc40.aarch64 libselinux-3.6-4.fc40.aarch64 libsemanage-3.6-3.fc40.aarch64 libsepol-3.6-3.fc40.aarch64 libsmartcols-2.40-13.fc41.aarch64 libssh-0.10.6-6.fc41.aarch64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.aarch64 libtasn1-4.19.0-6.fc40.aarch64 libtirpc-1.3.4-1.rc3.fc41.aarch64 libtool-ltdl-2.4.7-10.fc40.aarch64 libunistring-1.1-7.fc41.aarch64 libutempter-1.2.1-13.fc40.aarch64 libuuid-2.40-13.fc41.aarch64 libverto-0.3.2-8.fc40.aarch64 libxcrypt-4.4.36-5.fc40.aarch64 libxml2-2.12.6-1.fc41.aarch64 libzstd-1.5.6-1.fc41.aarch64 lua-libs-5.4.6-5.fc40.aarch64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.aarch64 mpfr-4.2.1-3.fc40.aarch64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.aarch64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.aarch64 openssl-libs-3.2.1-6.fc41.aarch64 p11-kit-0.25.3-4.fc40.aarch64 p11-kit-trust-0.25.3-4.fc40.aarch64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.aarch64 pam-libs-1.6.1-1.fc41.aarch64 patch-2.7.6-24.fc40.aarch64 pcre2-10.43-1.fc41.aarch64 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.aarch64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.aarch64 popt-1.19-6.fc40.aarch64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.aarch64 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.aarch64 rpm-build-4.19.1.1-1.fc40.aarch64 rpm-build-libs-4.19.1.1-1.fc40.aarch64 rpm-libs-4.19.1.1-1.fc40.aarch64 rpm-sequoia-1.6.0-2.fc40.aarch64 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.aarch64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.aarch64 sqlite-libs-3.45.2-1.fc41.aarch64 systemd-libs-255.5-1.fc41.aarch64 tar-1.35-3.fc40.aarch64 unzip-6.0-63.fc40.aarch64 util-linux-2.40-13.fc41.aarch64 util-linux-core-2.40-13.fc41.aarch64 which-2.21-41.fc40.aarch64 xxhash-libs-0.8.2-2.fc40.aarch64 xz-5.4.6-3.fc41.aarch64 xz-libs-5.4.6-3.fc41.aarch64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.aarch64 zlib-ng-compat-2.1.6-2.fc40.aarch64 zstd-1.5.6-1.fc41.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1714003200 Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-8.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-aarch64-1714053004.338640/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-aarch64-1714053004.338640/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-aarch64-1714053004.338640/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-aarch64-1714053004.338640/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ply6qi32/R-Biostrings/R-Biostrings.spec) Config(child) 1 minutes 13 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-8.fc41.src.rpm) Config(fedora-39-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-aarch64-bootstrap-1714053004.338640/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-aarch64-bootstrap-1714053004.338640/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-aarch64-1714053004.338640/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.aarch64 rpm-sequoia-1.6.0-1.fc39.aarch64 python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Finish: chroot init Start: build phase for R-Biostrings-2.64.1-8.fc41.src.rpm Start: build setup for R-Biostrings-2.64.1-8.fc41.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1714003200 Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-8.fc41.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 79 kB/s | 1.5 kB 00:00 Copr repository 95 MB/s | 17 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 73 kB/s | 3.8 kB 00:00 fedora 51 kB/s | 14 kB 00:00 updates 58 kB/s | 12 kB 00:00 Dependencies resolved. ====================================================================================================================================================== Package Arch Version Repository Size ====================================================================================================================================================== Installing: R-BiocGenerics noarch 0.42.0-8.fc41 copr_base 643 k R-GenomeInfoDb noarch 1.32.3-7.fc41 copr_base 3.8 M R-IRanges-devel aarch64 2.30.1-6.fc40 copr_base 10 k R-S4Vectors-devel aarch64 0.34.0-7.fc41 copr_base 14 k R-XVector-devel aarch64 0.36.0-7.fc41 copr_base 11 k R-core aarch64 4.4.0-1.fc41~bootstrap copr_base 62 M R-crayon noarch 1.5.1-6.fc40 copr_base 180 k R-devel aarch64 4.4.0-1.fc41~bootstrap copr_base 11 k texlive-collection-latexrecommended noarch 11:svn65512-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k Installing dependencies: R-GenomeInfoDbData noarch 1.2.8-7.fc41 copr_base 11 M R-IRanges aarch64 2.30.1-6.fc40 copr_base 2.3 M R-RCurl aarch64 1.98.1.8-6.fc40 copr_base 862 k R-S4Vectors aarch64 0.34.0-7.fc41 copr_base 2.1 M R-XVector aarch64 0.36.0-7.fc41 copr_base 646 k R-bitops aarch64 1.0.7-11.fc40 copr_base 41 k R-core-devel aarch64 4.4.0-1.fc41~bootstrap copr_base 88 k R-java aarch64 4.4.0-1.fc41~bootstrap copr_base 11 k R-java-devel aarch64 4.4.0-1.fc41~bootstrap copr_base 11 k R-rpm-macros noarch 1.2.1-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k abattis-cantarell-vf-fonts noarch 0.301-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120 k adobe-mappings-cmap noarch 20230622-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M adobe-mappings-cmap-deprecated noarch 20230622-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114 k adobe-mappings-pdf noarch 20190401-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 687 k alsa-lib aarch64 1.2.11-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 497 k annobin-docs noarch 12.51-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 89 k annobin-plugin-gcc aarch64 12.51-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 961 k avahi-libs aarch64 0.8-26.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67 k biber noarch 2.19-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 280 k brotli aarch64 1.1.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20 k brotli-devel aarch64 1.1.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34 k bzip2-devel aarch64 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214 k cairo aarch64 1.18.0-3.fc40 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0.8.0-43.20140228gitc2f5d13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31 k tre-devel aarch64 0.8.0-43.20140228gitc2f5d13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 k ttmkfdir aarch64 3.0.9-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 52 k tzdata noarch 2024a-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 431 k tzdata-java noarch 2024a-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 47 k urw-base35-bookman-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 847 k urw-base35-c059-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 874 k urw-base35-d050000l-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 76 k urw-base35-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10 k urw-base35-fonts-common noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k urw-base35-gothic-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 795 k urw-base35-nimbus-roman-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 856 k urw-base35-nimbus-sans-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M urw-base35-p052-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 973 k urw-base35-standard-symbols-ps-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 58 k urw-base35-z003-fonts noarch 20200910-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 276 k xdg-utils noarch 1.2.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79 k xml-common noarch 0.6.3-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31 k xorg-x11-fonts-Type1 noarch 7.5-38.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 499 k xorg-x11-proto-devel noarch 2024.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266 k xpdf-libs aarch64 1:4.05-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 601 k xz-devel aarch64 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62 k zlib-ng-compat-devel aarch64 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k zziplib aarch64 0.13.72-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88 k Transaction Summary ====================================================================================================================================================== Install 696 Packages Total size: 522 M Total download size: 679 k Installed size: 1.4 G Downloading Packages: [SKIPPED] R-GenomeInfoDb-1.32.3-7.fc41.noarch.rpm: Already downloaded [SKIPPED] R-GenomeInfoDbData-1.2.8-7.fc41.noarch.rpm: Already downloaded [SKIPPED] R-IRanges-2.30.1-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] R-RCurl-1.98.1.8-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] R-S4Vectors-0.34.0-7.fc41.aarch64.rpm: Already downloaded [SKIPPED] R-XVector-0.36.0-7.fc41.aarch64.rpm: Already downloaded [SKIPPED] R-bitops-1.0.7-11.fc40.aarch64.rpm: Already downloaded [SKIPPED] R-core-4.4.0-1.fc41~bootstrap.aarch64.rpm: Already downloaded [SKIPPED] R-core-devel-4.4.0-1.fc41~bootstrap.aarch64.rpm: Already downloaded [SKIPPED] R-crayon-1.5.1-6.fc40.noarch.rpm: Already downloaded [SKIPPED] R-devel-4.4.0-1.fc41~bootstrap.aarch64.rpm: Already downloaded [SKIPPED] R-java-4.4.0-1.fc41~bootstrap.aarch64.rpm: Already downloaded [SKIPPED] R-java-devel-4.4.0-1.fc41~bootstrap.aarch64.rpm: Already downloaded [SKIPPED] graphite2-1.3.14-15.fc40.aarch64.rpm: Already downloaded [SKIPPED] graphite2-devel-1.3.14-15.fc40.aarch64.rpm: Already downloaded [SKIPPED] libRmath-4.4.0-1.fc41~bootstrap.aarch64.rpm: Already downloaded [SKIPPED] libRmath-devel-4.4.0-1.fc41~bootstrap.aarch64.rpm: Already downloaded [SKIPPED] R-rpm-macros-1.2.1-9.fc40.noarch.rpm: Already downloaded [SKIPPED] abattis-cantarell-vf-fonts-0.301-12.fc40.noarch.rpm: Already downloaded [SKIPPED] adobe-mappings-cmap-20230622-3.fc40.noarch.rpm: Already downloaded [SKIPPED] adobe-mappings-cmap-deprecated-20230622-3.fc40.noarch.rpm: Already downloaded [SKIPPED] adobe-mappings-pdf-20190401-7.fc40.noarch.rpm: Already downloaded [SKIPPED] alsa-lib-1.2.11-2.fc40.aarch64.rpm: Already downloaded [SKIPPED] annobin-docs-12.51-1.fc41.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.51-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] avahi-libs-0.8-26.fc40.aarch64.rpm: Already downloaded [SKIPPED] biber-2.19-5.fc40.noarch.rpm: Already downloaded [SKIPPED] brotli-1.1.0-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] brotli-devel-1.1.0-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] bzip2-devel-1.0.8-18.fc40.aarch64.rpm: Already downloaded [SKIPPED] cairo-1.18.0-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] cairo-devel-1.18.0-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.28.3-4.fc41.aarch64.rpm: Already downloaded [SKIPPED] copy-jdk-configs-4.1-5.fc40.noarch.rpm: Already downloaded [SKIPPED] cpp-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] crypto-policies-scripts-20240320-1.git58e3d95.fc41.noarch.rpm: Already downloaded [SKIPPED] cups-libs-2.4.7-13.fc41.aarch64.rpm: Already downloaded [SKIPPED] dbus-libs-1.14.10-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] default-fonts-core-sans-4.0-12.fc40.noarch.rpm: Already downloaded [SKIPPED] desktop-file-utils-0.26-12.fc40.aarch64.rpm: Already downloaded [SKIPPED] emacs-filesystem-30.0-2.fc41.noarch.rpm: Already downloaded [SKIPPED] expat-2.6.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] flexiblas-3.4.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] flexiblas-devel-3.4.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.4.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] flexiblas-netlib64-3.4.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp-3.4.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp64-3.4.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] fontconfig-2.15.0-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] fontconfig-devel-2.15.0-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-14.fc40.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.2-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] freetype-devel-2.13.2-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] fribidi-1.0.13-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] gc-8.2.2-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] gcc-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] gcc-c++-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] gcc-gfortran-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] gettext-0.22.5-2.fc41.aarch64.rpm: Already downloaded [SKIPPED] gettext-envsubst-0.22.5-2.fc41.aarch64.rpm: Already downloaded [SKIPPED] gettext-libs-0.22.5-2.fc41.aarch64.rpm: Already downloaded [SKIPPED] gettext-runtime-0.22.5-2.fc41.aarch64.rpm: Already downloaded [SKIPPED] ghostscript-10.03.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] ghostscript-tools-fonts-10.03.0-1.fc41.noarch.rpm: Already downloaded [SKIPPED] ghostscript-tools-printing-10.03.0-1.fc41.noarch.rpm: Already downloaded [SKIPPED] glib2-2.80.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] glib2-devel-2.80.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] glibc-devel-2.39.9000-14.fc41.aarch64.rpm: Already downloaded [SKIPPED] gnutls-3.8.5-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] google-droid-sans-fonts-20200215-19.fc40.noarch.rpm: Already downloaded [SKIPPED] google-noto-fonts-common-20240401-1.fc41.noarch.rpm: Already downloaded [SKIPPED] google-noto-sans-vf-fonts-20240401-1.fc41.noarch.rpm: Already downloaded [SKIPPED] groff-base-1.23.0-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] guile30-3.0.7-12.fc40.aarch64.rpm: Already downloaded [SKIPPED] harfbuzz-8.4.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] harfbuzz-devel-8.4.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] harfbuzz-icu-8.4.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] java-21-openjdk-21.0.2.0.13-3.fc41.aarch64.rpm: Already downloaded [SKIPPED] java-21-openjdk-devel-21.0.2.0.13-3.fc41.aarch64.rpm: Already downloaded [SKIPPED] java-21-openjdk-headless-21.0.2.0.13-3.fc41.aarch64.rpm: Already downloaded [SKIPPED] javapackages-filesystem-6.2.0-9.fc41.noarch.rpm: Already downloaded [SKIPPED] jbig2dec-libs-0.20-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] jbigkit-libs-2.1-29.fc40.aarch64.rpm: Already downloaded [SKIPPED] kernel-headers-6.9.0-0.rc5.44.fc41.aarch64.rpm: Already downloaded [SKIPPED] lcms2-2.16-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libICE-1.1.1-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libSM-1.2.4-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libX11-1.8.9-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libX11-common-1.8.9-1.fc41.noarch.rpm: Already downloaded [SKIPPED] libX11-devel-1.8.9-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libX11-xcb-1.8.9-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libXau-1.0.11-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXau-devel-1.0.11-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXaw-1.0.16-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libXcomposite-0.4.6-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXext-1.3.6-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXext-devel-1.3.6-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXft-2.3.8-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXft-devel-2.3.8-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXi-1.8.1-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXmu-1.2.1-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libXpm-3.5.17-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXrender-0.9.11-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXrender-devel-0.9.11-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXt-1.3.0-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libXtst-1.2.4-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] libasan-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] libatomic-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-11.fc40.aarch64.rpm: Already downloaded [SKIPPED] libblkid-devel-2.40-13.fc41.aarch64.rpm: Already downloaded [SKIPPED] libdatrie-0.2.13-9.fc40.aarch64.rpm: Already downloaded [SKIPPED] libffi-devel-3.4.6-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libfontenc-1.1.8-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libgfortran-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] libgs-10.03.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libicu-74.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libicu-devel-74.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libijs-0.35-22.fc40.aarch64.rpm: Already downloaded [SKIPPED] libjpeg-turbo-3.0.2-2.fc41.aarch64.rpm: Already downloaded [SKIPPED] liblerc-4.0.0-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] libmount-devel-2.40-13.fc41.aarch64.rpm: Already downloaded [SKIPPED] libmpc-1.3.1-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] libpaper-2.1.1-4.fc41.aarch64.rpm: Already downloaded [SKIPPED] libpng-1.6.40-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libpng-devel-1.6.40-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libselinux-devel-3.6-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] libsepol-devel-3.6-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libstdc++-devel-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] libtextstyle-0.22.5-2.fc41.aarch64.rpm: Already downloaded [SKIPPED] libthai-0.1.29-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] libtiff-4.6.0-2.fc40.aarch64.rpm: Already downloaded [SKIPPED] libtirpc-devel-1.3.4-1.rc3.fc41.aarch64.rpm: Already downloaded [SKIPPED] libubsan-14.0.1-0.15.fc41.aarch64.rpm: Already downloaded [SKIPPED] libwebp-1.4.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libxcb-1.17.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libxcb-devel-1.17.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.36-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] libxml2-devel-2.12.6-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] libxslt-1.1.39-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] lksctp-tools-1.0.19-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] lua-5.4.6-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] lua-posix-36.2.1-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] mailcap-2.1.54-5.fc40.noarch.rpm: Already downloaded [SKIPPED] make-4.4.1-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] mkfontscale-1.2.2-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-9.fc40.aarch64.rpm: Already downloaded [SKIPPED] ncurses-6.4-12.20240127.fc40.aarch64.rpm: Already downloaded [SKIPPED] nettle-3.9.1-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] nspr-4.35.0-22.fc41.aarch64.rpm: Already downloaded [SKIPPED] nss-3.99.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] nss-softokn-3.99.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] nss-softokn-freebl-3.99.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] nss-sysinit-3.99.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] nss-util-3.99.0-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] openblas-0.3.26-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] openblas-openmp-0.3.26-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] openblas-openmp64-0.3.26-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] openjpeg2-2.5.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] pango-1.52.2-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] pcre2-devel-10.43-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] pcre2-utf16-10.43-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] pcre2-utf32-10.43-1.fc41.aarch64.rpm: Already downloaded [SKIPPED] perl-Authen-SASL-2.1700-3.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-AutoLoader-5.74-507.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-B-1.88-507.fc41.aarch64.rpm: Already downloaded [SKIPPED] perl-B-Hooks-EndOfScope-0.28-1.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-Business-ISBN-3.009-4.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Business-ISBN-Data-20240420.001-1.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-Business-ISMN-1.203-4.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Business-ISSN-1.005-10.fc40.noarch.rpm: Already downloaded [SKIPPED] 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[SKIPPED] zlib-ng-compat-devel-2.1.6-2.fc40.aarch64.rpm: Already downloaded [SKIPPED] zziplib-0.13.72-6.fc40.aarch64.rpm: Already downloaded (693/696): R-S4Vectors-devel-0.34.0-7.fc41.aarc 744 kB/s | 14 kB 00:00 (694/696): R-BiocGenerics-0.42.0-8.fc41.noarch. 30 MB/s | 643 kB 00:00 (695/696): R-IRanges-devel-2.30.1-6.fc40.aarch6 509 kB/s | 10 kB 00:00 (696/696): R-XVector-devel-0.36.0-7.fc41.aarch6 1.5 MB/s | 11 kB 00:00 -------------------------------------------------------------------------------- Total 1.2 MB/s | 679 kB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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texlive-auxhook-11:svn53173-71.fc40.noarch texlive-avantgar-11:svn61983-71.fc40.noarch texlive-babel-11:svn65823-71.fc40.noarch texlive-babel-english-11:svn44495-71.fc40.noarch texlive-babelbib-11:svn57349-71.fc40.noarch texlive-base-11:20230311-84.fc41.aarch64 texlive-beamer-11:svn65984-71.fc40.noarch texlive-bera-11:svn20031.0-71.fc40.noarch texlive-beton-11:svn15878.0-71.fc40.noarch texlive-biblatex-11:svn66403-71.fc40.noarch texlive-bibtex-11:svn66186-84.fc41.aarch64 texlive-bidi-11:svn65572-71.fc40.noarch texlive-bigintcalc-11:svn53172-71.fc40.noarch texlive-bitset-11:svn53837-71.fc40.noarch texlive-bookman-11:svn61719-71.fc40.noarch texlive-bookmark-11:svn56885-71.fc40.noarch texlive-booktabs-11:svn53402-71.fc40.noarch texlive-breakurl-11:svn29901.1.40-71.fc40.noarch texlive-breqn-11:svn60881-71.fc40.noarch texlive-caption-11:svn66580-71.fc40.noarch texlive-carlisle-11:svn59577-71.fc40.noarch texlive-catchfile-11:svn53084-71.fc40.noarch texlive-changepage-11:svn15878.1.0c-71.fc40.noarch texlive-charter-11:svn15878.0-71.fc40.noarch texlive-cite-11:svn36428.5.5-71.fc40.noarch texlive-cm-11:svn57963-71.fc40.noarch texlive-cm-super-11:svn15878.0-71.fc40.noarch texlive-cmap-11:svn57640-71.fc40.noarch texlive-collection-basic-11:svn59159-71.fc40.noarch texlive-collection-latex-11:svn63515-71.fc40.noarch texlive-collection-latexrecommended-11:svn65512-71.fc40.noarch texlive-colorprofiles-11:svn49086-71.fc40.noarch texlive-colortbl-11:svn64015-71.fc40.noarch texlive-courier-11:svn61719-71.fc40.noarch texlive-crop-11:svn55424-71.fc40.noarch texlive-csquotes-11:svn64389-71.fc40.noarch texlive-ctable-11:svn38672-71.fc40.noarch texlive-ctablestack-11:svn38514-71.fc40.noarch texlive-currfile-11:svn64673-71.fc40.noarch texlive-dehyph-11:svn48599-71.fc40.noarch texlive-dvipdfmx-11:svn66203-84.fc41.aarch64 texlive-dvips-11:svn66203-84.fc41.aarch64 texlive-ec-11:svn25033.1.0-71.fc40.noarch texlive-enctex-11:svn34957.0-71.fc40.noarch texlive-enumitem-11:svn51423-71.fc40.noarch texlive-epstopdf-11:svn66461-84.fc41.noarch texlive-epstopdf-pkg-11:svn53546-71.fc40.noarch texlive-eso-pic-11:svn56658-71.fc40.noarch texlive-etex-11:svn66203-71.fc40.noarch texlive-etex-pkg-11:svn41784-71.fc40.noarch texlive-etexcmds-11:svn53171-71.fc40.noarch texlive-etoolbox-11:svn56554-71.fc40.noarch texlive-euenc-11:svn19795.0.1h-71.fc40.noarch texlive-euler-11:svn42428-71.fc40.noarch texlive-everysel-11:svn57489-71.fc40.noarch texlive-everyshi-11:svn57001-71.fc40.noarch texlive-extsizes-11:svn17263.1.4a-71.fc40.noarch texlive-fancybox-11:svn18304.1.4-71.fc40.noarch texlive-fancyhdr-11:svn64977-71.fc40.noarch texlive-fancyref-11:svn15878.0.9c-71.fc40.noarch texlive-fancyvrb-11:svn65585-71.fc40.noarch texlive-filecontents-11:svn52142-71.fc40.noarch texlive-filehook-11:svn64822-71.fc40.noarch texlive-finstrut-11:svn21719.0.5-71.fc40.noarch texlive-firstaid-11:svn64892-71.fc40.noarch texlive-fix2col-11:svn38770-71.fc40.noarch texlive-float-11:svn15878.1.3d-71.fc40.noarch texlive-fontspec-11:svn63386-71.fc40.noarch texlive-footmisc-11:svn62524-71.fc40.noarch texlive-footnotehyper-11:svn60374-71.fc40.noarch texlive-fp-11:svn49719-71.fc40.noarch texlive-fpl-11:svn54512-71.fc40.noarch texlive-geometry-11:svn61719-71.fc40.noarch texlive-gettitlestring-11:svn53170-71.fc40.noarch texlive-glyphlist-11:svn54074-84.fc41.noarch texlive-graphics-11:svn66204-71.fc40.noarch texlive-graphics-cfg-11:svn41448-71.fc40.noarch texlive-graphics-def-11:svn64487-71.fc40.noarch texlive-grfext-11:svn53024-71.fc40.noarch texlive-grffile-11:svn52756-71.fc40.noarch texlive-gsftopk-11:svn52851-84.fc41.aarch64 texlive-helvetic-11:svn61719-71.fc40.noarch texlive-hobsub-11:svn52810-71.fc40.noarch texlive-hologo-11:svn61719-71.fc40.noarch texlive-hopatch-11:svn65491-71.fc40.noarch texlive-hycolor-11:svn53584-71.fc40.noarch texlive-hypdoc-11:svn65678-71.fc40.noarch texlive-hyperref-11:svn65758-71.fc40.noarch texlive-hyph-utf8-11:svn61719-71.fc40.noarch texlive-hyphen-base-11:svn66413-71.fc40.noarch texlive-hyphenex-11:svn57387-71.fc40.noarch texlive-ifmtarg-11:svn47544-71.fc40.noarch texlive-ifplatform-11:svn45533-71.fc40.noarch texlive-iftex-11:svn61910-71.fc40.noarch texlive-index-11:svn24099.4.1beta-71.fc40.noarch texlive-infwarerr-11:svn53023-71.fc40.noarch texlive-intcalc-11:svn53168-71.fc40.noarch texlive-jknapltx-11:svn19440.0-71.fc40.noarch texlive-kastrup-11:svn15878.0-71.fc40.noarch texlive-knuth-lib-11:svn57963-71.fc40.noarch texlive-knuth-local-11:svn57963-71.fc40.noarch texlive-koma-script-11:svn64685-71.fc40.noarch texlive-kpathsea-11:svn66209-84.fc41.aarch64 texlive-kvdefinekeys-11:svn53193-71.fc40.noarch texlive-kvoptions-11:svn63622-71.fc40.noarch texlive-kvsetkeys-11:svn64632-71.fc40.noarch texlive-l3backend-11:svn65573-71.fc40.noarch texlive-l3experimental-11:svn65621-71.fc40.noarch texlive-l3kernel-11:svn66094-71.fc40.noarch texlive-l3packages-11:svn65722-71.fc40.noarch texlive-latex-11:svn65161-84.fc41.noarch texlive-latex-fonts-11:svn28888.0-71.fc40.noarch texlive-latex-lab-11:svn64892-71.fc40.noarch texlive-latexbug-11:svn63596-71.fc40.noarch texlive-latexconfig-11:svn53525-71.fc40.noarch texlive-letltxmacro-11:svn53022-71.fc40.noarch texlive-lib-11:20230311-84.fc41.aarch64 texlive-lineno-11:svn65586-71.fc40.noarch texlive-listings-11:svn66222-71.fc40.noarch texlive-lm-11:svn65956-71.fc40.noarch texlive-lm-math-11:svn36915.1.959-71.fc40.noarch texlive-logreq-11:svn53003-71.fc40.noarch texlive-ltabptch-11:svn17533.1.74d-71.fc40.noarch texlive-ltxcmds-11:svn56421-71.fc40.noarch texlive-ltxmisc-11:svn21927.0-71.fc40.noarch texlive-lua-alt-getopt-11:svn56414-71.fc40.noarch texlive-lua-uni-algos-11:svn62204-71.fc40.noarch texlive-luabidi-11:svn54512-71.fc40.noarch texlive-luahbtex-11:svn66186-84.fc41.aarch64 texlive-lualatex-math-11:svn61464-71.fc40.noarch texlive-lualibs-11:svn64615-71.fc40.noarch texlive-luaotfload-11:svn64616-84.fc41.noarch texlive-luatex-11:svn66967-84.fc41.aarch64 texlive-luatexbase-11:svn52663-71.fc40.noarch texlive-lwarp-11:svn66259-84.fc41.noarch texlive-makecmds-11:svn15878.0-71.fc40.noarch texlive-makeindex-11:svn62517-84.fc41.aarch64 texlive-marginnote-11:svn48383-71.fc40.noarch texlive-marvosym-11:svn29349.2.2a-71.fc40.noarch texlive-mathpazo-11:svn52663-71.fc40.noarch texlive-mathspec-11:svn42773-71.fc40.noarch texlive-mathtools-11:svn63767-71.fc40.noarch texlive-mdwtools-11:svn15878.1.05.4-71.fc40.noarch texlive-memoir-11:svn65040-71.fc40.noarch texlive-metafont-11:svn66186-84.fc41.aarch64 texlive-metalogo-11:svn18611.0.12-71.fc40.noarch texlive-mflogo-11:svn42428-71.fc40.noarch texlive-mfnfss-11:svn46036-71.fc40.noarch texlive-mfware-11:svn66186-84.fc41.aarch64 texlive-microtype-11:svn66587-71.fc40.noarch texlive-minitoc-11:svn61719-71.fc40.noarch texlive-mnsymbol-11:svn18651.1.4-71.fc40.noarch texlive-modes-11:svn61719-71.fc40.noarch texlive-mparhack-11:svn59066-71.fc40.noarch texlive-mptopdf-11:svn65952-84.fc41.noarch texlive-ms-11:svn57473-71.fc40.noarch texlive-multido-11:svn18302.1.42-71.fc40.noarch texlive-natbib-11:svn20668.8.31b-71.fc40.noarch texlive-newfloat-11:svn52906-71.fc40.noarch texlive-notoccite-11:svn18129.0-71.fc40.noarch texlive-ntgclass-11:svn65522-71.fc40.noarch texlive-oberdiek-11:svn65521-84.fc41.noarch texlive-pagesel-11:svn56105-71.fc40.noarch texlive-palatino-11:svn61719-71.fc40.noarch texlive-paralist-11:svn43021-71.fc40.noarch texlive-parallel-11:svn15878.0-71.fc40.noarch texlive-parskip-11:svn58358-71.fc40.noarch texlive-pdfcol-11:svn64469-71.fc40.noarch texlive-pdfcolfoot-11:svn65512-71.fc40.noarch texlive-pdfcolmk-11:svn52912-71.fc40.noarch texlive-pdfescape-11:svn53082-71.fc40.noarch texlive-pdflscape-11:svn64851-71.fc40.noarch texlive-pdfmanagement-testphase-11:svn66532-71.fc40.noarch texlive-pdfpages-11:svn65319-71.fc40.noarch texlive-pdftex-11:svn66243-84.fc41.aarch64 texlive-pdftexcmds-11:svn55777-71.fc40.noarch texlive-pgf-11:svn65553-71.fc40.noarch texlive-picture-11:svn54867-71.fc40.noarch texlive-placeins-11:svn19848.2.2-71.fc40.noarch texlive-plain-11:svn57963-71.fc40.noarch texlive-polyglossia-11:svn65792-71.fc40.noarch texlive-psfrag-11:svn15878.3.04-71.fc40.noarch texlive-pslatex-11:svn57434-71.fc40.noarch texlive-psnfss-11:svn54694-71.fc40.noarch texlive-pspicture-11:svn15878.0-71.fc40.noarch texlive-pst-3d-11:svn17257.1.10-71.fc40.noarch texlive-pst-coil-11:svn62977-71.fc40.noarch texlive-pst-eps-11:svn15878.1.0-71.fc40.noarch texlive-pst-fill-11:svn60671-71.fc40.noarch texlive-pst-grad-11:svn15878.1.06-71.fc40.noarch texlive-pst-math-11:svn64732-71.fc40.noarch texlive-pst-node-11:svn61838-71.fc40.noarch texlive-pst-ovl-11:svn54963-71.fc40.noarch texlive-pst-plot-11:svn65346-71.fc40.noarch texlive-pst-text-11:svn49542-71.fc40.noarch texlive-pst-tools-11:svn60621-71.fc40.noarch texlive-pst-tree-11:svn60421-71.fc40.noarch texlive-pstricks-11:svn65346-71.fc40.noarch texlive-pstricks-add-11:svn65067-71.fc40.noarch texlive-ragged2e-11:svn66152-71.fc40.noarch texlive-rcs-11:svn15878.0-71.fc40.noarch texlive-realscripts-11:svn56594-71.fc40.noarch texlive-refcount-11:svn53164-71.fc40.noarch texlive-rerunfilecheck-11:svn63869-71.fc40.noarch texlive-rsfs-11:svn15878.0-71.fc40.noarch texlive-sansmath-11:svn17997.1.1-71.fc40.noarch texlive-sansmathaccent-11:svn53628-71.fc40.noarch texlive-sauerj-11:svn15878.0-71.fc40.noarch texlive-section-11:svn20180.0-71.fc40.noarch texlive-seminar-11:svn59801-71.fc40.noarch texlive-sepnum-11:svn20186.2.0-71.fc40.noarch texlive-setspace-11:svn65206-71.fc40.noarch texlive-showexpl-11:svn57414-71.fc40.noarch texlive-stringenc-11:svn52982-71.fc40.noarch texlive-subfig-11:svn15878.1.3-71.fc40.noarch texlive-symbol-11:svn61719-71.fc40.noarch texlive-tex-11:svn66186-84.fc41.aarch64 texlive-tex-ini-files-11:svn40533-71.fc40.noarch texlive-texlive-common-doc-11:svn54176-71.fc40.noarch texlive-texlive-en-11:svn66572-84.fc41.noarch texlive-texlive-msg-translations-11:svn66593-71.fc40.noarch texlive-texlive-scripts-11:svn66584-84.fc41.noarch texlive-texlive.infra-11:svn66512-84.fc41.noarch texlive-textcase-11:svn63868-71.fc40.noarch texlive-thumbpdf-11:svn62518-84.fc41.noarch texlive-times-11:svn61719-71.fc40.noarch texlive-tipa-11:svn29349.1.3-71.fc40.noarch texlive-titlesec-11:svn59845-71.fc40.noarch texlive-tools-11:svn64892-71.fc40.noarch texlive-translator-11:svn59412-71.fc40.noarch texlive-transparent-11:svn64852-71.fc40.noarch texlive-typehtml-11:svn17134.0-71.fc40.noarch texlive-ucharcat-11:svn38907-71.fc40.noarch texlive-ucs-11:svn64114-71.fc40.noarch texlive-underscore-11:svn18261.0-71.fc40.noarch texlive-unicode-data-11:svn64423-71.fc40.noarch texlive-unicode-math-11:svn61719-71.fc40.noarch texlive-uniquecounter-11:svn53162-71.fc40.noarch texlive-url-11:svn32528.3.4-71.fc40.noarch texlive-utopia-11:svn15878.0-71.fc40.noarch texlive-varwidth-11:svn24104.0.92-71.fc40.noarch texlive-xcolor-11:svn63563-71.fc40.noarch texlive-xdvi-11:svn62387-84.fc41.aarch64 texlive-xetex-11:svn66203-84.fc41.aarch64 texlive-xetexconfig-11:svn45845-71.fc40.noarch texlive-xifthen-11:svn38929-71.fc40.noarch texlive-xkeyval-11:svn63616-71.fc40.noarch texlive-xltxtra-11:svn56594-71.fc40.noarch texlive-xpatch-11:svn54563-71.fc40.noarch texlive-xstring-11:svn65551-71.fc40.noarch texlive-xunicode-11:svn30466.0.981-71.fc40.noarch texlive-zapfding-11:svn61719-71.fc40.noarch texlive-zref-11:svn62977-71.fc40.noarch tk-1:8.6.14-1.fc41.aarch64 tk-devel-1:8.6.14-1.fc41.aarch64 tre-0.8.0-43.20140228gitc2f5d13.fc40.aarch64 tre-common-0.8.0-43.20140228gitc2f5d13.fc40.noarch tre-devel-0.8.0-43.20140228gitc2f5d13.fc40.aarch64 ttmkfdir-3.0.9-70.fc40.aarch64 tzdata-2024a-5.fc41.noarch tzdata-java-2024a-5.fc41.noarch urw-base35-bookman-fonts-20200910-20.fc41.noarch urw-base35-c059-fonts-20200910-20.fc41.noarch urw-base35-d050000l-fonts-20200910-20.fc41.noarch urw-base35-fonts-20200910-20.fc41.noarch urw-base35-fonts-common-20200910-20.fc41.noarch urw-base35-gothic-fonts-20200910-20.fc41.noarch urw-base35-nimbus-mono-ps-fonts-20200910-20.fc41.noarch urw-base35-nimbus-roman-fonts-20200910-20.fc41.noarch urw-base35-nimbus-sans-fonts-20200910-20.fc41.noarch urw-base35-p052-fonts-20200910-20.fc41.noarch urw-base35-standard-symbols-ps-fonts-20200910-20.fc41.noarch urw-base35-z003-fonts-20200910-20.fc41.noarch xdg-utils-1.2.1-1.fc41.noarch xml-common-0.6.3-63.fc40.noarch xorg-x11-fonts-Type1-7.5-38.fc40.noarch xorg-x11-proto-devel-2024.1-1.fc41.noarch xpdf-libs-1:4.05-3.fc41.aarch64 xz-devel-1:5.4.6-3.fc41.aarch64 zlib-ng-compat-devel-2.1.6-2.fc40.aarch64 zziplib-0.13.72-6.fc40.aarch64 Complete! Finish: build setup for R-Biostrings-2.64.1-8.fc41.src.rpm Start: rpmbuild R-Biostrings-2.64.1-8.fc41.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1714003200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.VnR46z + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Biostrings + /usr/bin/mkdir -p Biostrings + cd Biostrings + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Biostrings_2.64.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/Biostrings-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Biostrings-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.XeAEIJ + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.FcgDgj + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64 ++ dirname /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64 + mkdir -p /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64/usr/lib64/R/library + R CMD INSTALL Biostrings -l /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64/usr/lib64/R/library * installing *source* package ‘Biostrings’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 14.0.1 20240411 (Red Hat 14.0.1-0)’ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c BAB_class.c -o BAB_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c BitMatrix.c -o BitMatrix.o BitMatrix.c:299:13: warning: ‘BitMatrix_print’ defined but not used [-Wunused-function] 299 | static void BitMatrix_print(BitMatrix *bitmat) | ^~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c MIndex_class.c -o MIndex_class.o MIndex_class.c: In function ‘SparseMIndex_endIndex’: MIndex_class.c:184:27: warning: unused variable ‘poffsets_order’ [-Wunused-variable] 184 | IntAE *poffsets, *poffsets_order; | ^~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c PreprocessedTB_class.c -o PreprocessedTB_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c R_init_Biostrings.c -o R_init_Biostrings.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RoSeqs_utils.c -o RoSeqs_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c SparseList_utils.c -o SparseList_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c XStringSetList_class.c -o XStringSetList_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c XStringSet_class.c -o XStringSet_class.o XStringSet_class.c: In function ‘new_XStringSet_from_CHARACTER’: XStringSet_class.c:124:17: warning: ‘lkup_len’ may be used uninitialized [-Wmaybe-uninitialized] 124 | _copy_CHARSXP_to_Chars_holder(&ans_elt_holder, x_elt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | INTEGER(start)[i], lkup0, lkup_len); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ XStringSet_class.c:103:22: note: ‘lkup_len’ was declared here 103 | int ans_len, lkup_len, i; | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c XString_class.c -o XString_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c XVector_stubs.c -o XVector_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c align_needwunsQS.c -o align_needwunsQS.o align_needwunsQS.c: In function ‘align_needwunsQS’: align_needwunsQS.c:155:29: warning: ‘sc’ may be used uninitialized [-Wmaybe-uninitialized] 155 | INTEGER(ans_elt)[0] = score; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ align_needwunsQS.c:27:19: note: ‘sc’ was declared here 27 | int *sco, sc, n1, n2, i1, i2, j1, j2, al_buf_size; | ^~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c align_utils.c -o align_utils.o align_utils.c: In function ‘PairwiseAlignmentsSingleSubject_align_aligned’: align_utils.c:232:78: warning: ‘indelStartPattern’ may be used uninitialized [-Wmaybe-uninitialized] 232 | if ((numberOfIndelPattern == 0) || (jPattern < indelStartPattern)) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:21: note: ‘indelStartPattern’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:238:55: warning: ‘indelWidthPattern’ may be used uninitialized [-Wmaybe-uninitialized] 238 | for (k = 0; k < indelWidthPattern; k++) { | ~~^~~~~~~~~~~~~~~~~~~ align_utils.c:221:40: note: ‘indelWidthPattern’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:231:63: warning: ‘indelStartSubject’ may be used uninitialized [-Wmaybe-uninitialized] 231 | if ((numberOfIndelSubject == 0) || (j < indelStartSubject)) { | ~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:59: note: ‘indelStartSubject’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:250:42: warning: ‘indelWidthSubject’ may be used uninitialized [-Wmaybe-uninitialized] 250 | jPattern += indelWidthSubject; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:78: note: ‘indelWidthSubject’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c find_palindromes.c -o find_palindromes.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gtestsim.c -o gtestsim.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c inject_code.c -o inject_code.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c letter_frequency.c -o letter_frequency.o letter_frequency.c: In function ‘XString_letterFrequencyInSlidingView’: letter_frequency.c:536:31: warning: too many arguments for format [-Wformat-extra-args] 536 | error("Biostrings internal error in " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ letter_frequency.c: In function ‘XStringSet_letterFrequency’: letter_frequency.c:589:31: warning: too many arguments for format [-Wformat-extra-args] 589 | error("Biostrings internal error in " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ letter_frequency.c: In function ‘XStringSet_two_way_letter_frequency’: letter_frequency.c:957:48: warning: unused variable ‘x_pos’ [-Wunused-variable] 957 | int x_width, y_width, x_length, *ans_mat, i, x_pos; | ^~~~~ letter_frequency.c:956:13: warning: unused variable ‘ans_dimnames’ [-Wunused-variable] 956 | SEXP ans, ans_dimnames; | ^~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lowlevel_matching.c -o lowlevel_matching.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_PWM.c -o match_PWM.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_pattern.c -o match_pattern.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_pattern_indels.c -o match_pattern_indels.o match_pattern_indels.c:7:13: warning: ‘test_match_pattern_indels’ defined but not used [-Wunused-function] 7 | static void test_match_pattern_indels(const char *p, const char *s, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_pattern_shiftor.c -o match_pattern_shiftor.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_pdict.c -o match_pdict.o In function ‘vcount_PDict3Parts_XStringSet’, inlined from ‘vmatch_PDict3Parts_XStringSet’ at match_pdict.c:508:10: match_pdict.c:419:33: warning: ‘ans_col’ may be used uninitialized [-Wmaybe-uninitialized] 419 | ans_col += tb_length; | ~~~~~~~~^~~~~~~~~~~~ match_pdict.c: In function ‘vmatch_PDict3Parts_XStringSet’: match_pdict.c:392:65: note: ‘ans_col’ was declared here 392 | int tb_length, S_length, collapse0, i, j, match_count, *ans_col; | ^~~~~~~ In function ‘vcount_XStringSet_XStringSet’, inlined from ‘vmatch_XStringSet_XStringSet’ at match_pdict.c:542:10: match_pdict.c:470:41: warning: ‘ans_elt’ may be used uninitialized [-Wmaybe-uninitialized] 470 | ans_elt += P_length; | ~~~~~~~~^~~~~~~~~~~ match_pdict.c: In function ‘vmatch_XStringSet_XStringSet’: match_pdict.c:441:64: note: ‘ans_elt’ was declared here 441 | int P_length, S_length, collapse0, i, j, match_count, *ans_elt; | ^~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o match_pdict_ACtree2.c: In function ‘ACtree2_summary’: match_pdict_ACtree2.c:732:45: warning: unknown conversion type character ‘)’ in format [-Wformat=] 732 | Rprintf("| - %u nodes (%.2f%) with %d links\n", | ^ match_pdict_ACtree2.c: In function ‘split_and_move_pointers’: match_pdict_ACtree2.c:1031:17: warning: variable ‘node0’ set but not used [-Wunused-but-set-variable] 1031 | ACnode *node0, *node1, *node2; | ^~~~~ match_pdict_ACtree2.c: In function ‘merge_pointers’: match_pdict_ACtree2.c:1076:17: warning: variable ‘node0’ set but not used [-Wunused-but-set-variable] 1076 | ACnode *node0, *node1, *node2; | ^~~~~ match_pdict_ACtree2.c: At top level: match_pdict_ACtree2.c:602:21: warning: ‘a_nice_max_nodeextbuf_nelt’ defined but not used [-Wunused-function] 602 | static unsigned int a_nice_max_nodeextbuf_nelt(int nnodes) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ match_pdict_ACtree2.c:139:13: warning: ‘debug_node_counting_functions’ defined but not used [-Wunused-function] 139 | static void debug_node_counting_functions(int maxdepth) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_pdict_Twobit.c -o match_pdict_Twobit.o In file included from /usr/include/R/Rdefines.h:41, from /usr/lib64/R/library/S4Vectors/include/S4Vectors_defines.h:18, from /usr/lib64/R/library/IRanges/include/IRanges_defines.h:18, from ../inst/include/Biostrings_defines.h:18, from Biostrings.h:1, from match_pdict_Twobit.c:10: In function ‘Twobit_asLIST’, inlined from ‘build_Twobit’ at match_pdict_Twobit.c:145:2: match_pdict_Twobit.c:75:27: warning: ‘twobit_sign2pos’ may be used uninitialized [-Wmaybe-uninitialized] 75 | PROTECT(ans_elt = new_XInteger_from_tag("XInteger", twobit_sign2pos)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ match_pdict_Twobit.c: In function ‘build_Twobit’: match_pdict_Twobit.c:110:19: note: ‘twobit_sign2pos’ was declared here 110 | SEXP ans, twobit_sign2pos; | ^~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_pdict_utils.c -o match_pdict_utils.o match_pdict_utils.c: In function ‘match_ppheadtail0’: match_pdict_utils.c:653:56: warning: unused variable ‘ncol’ [-Wunused-variable] 653 | int nelt, min_safe_tb_end, max_safe_tb_end, j, ncol; | ^~~~ match_pdict_utils.c: In function ‘match_ppheadtail’: match_pdict_utils.c:713:13: warning: unused variable ‘nelt’ [-Wunused-variable] 713 | int nelt, nkey0, nkey1, nkey2, i, key; | ^~~~ match_pdict_utils.c: In function ‘_match_pdict_all_flanks’: match_pdict_utils.c:820:51: warning: unused variable ‘subtotal_NFC’ [-Wunused-variable] 820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL; | ^~~~~~~~~~~~ match_pdict_utils.c:820:34: warning: unused variable ‘total_NFC’ [-Wunused-variable] 820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL; | ^~~~~~~~~ match_pdict_utils.c:819:40: warning: unused variable ‘NFC’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~ match_pdict_utils.c:819:33: warning: unused variable ‘nloci’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~~~ match_pdict_utils.c:819:27: warning: unused variable ‘ndup’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~~ match_pdict_utils.c: At top level: match_pdict_utils.c:261:13: warning: ‘match_headtail_by_loc’ defined but not used [-Wunused-function] 261 | static void match_headtail_by_loc(const HeadTail *headtail, | ^~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c match_reporting.c -o match_reporting.o match_reporting.c: In function ‘_new_MatchBuf’: match_reporting.c:49:23: warning: too many arguments for format [-Wformat-extra-args] 49 | error("Biostrings internal error in _new_MatchBuf(): ", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c matchprobes.c -o matchprobes.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pmatchPattern.c -o pmatchPattern.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c read_fasta_files.c -o read_fasta_files.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c read_fastq_files.c -o read_fastq_files.o read_fastq_files.c: In function ‘parse_FASTQ_file’: read_fastq_files.c:406:28: warning: ‘dont_load’ may be used uninitialized [-Wmaybe-uninitialized] 406 | if (dont_load || loader->new_qualid_hook == NULL) | ^ read_fastq_files.c:309:26: note: ‘dont_load’ was declared here 309 | lineinrecno, dont_load; | ^~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c replaceAt.c -o replaceAt.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c replace_letter_at.c -o replace_letter_at.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c strutils.c -o strutils.o strutils.c: In function ‘MP_longestConsecutive’: strutils.c:50:72: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 50 | error("'letter' must contain exactly one character but contains %d.", | ~^ | | | int | %ld 51 | strlen(pc)); | ~~~~~~~~~~ | | | size_t {aka long unsigned int} gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c translate.c -o translate.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c unstrsplit_methods.c -o unstrsplit_methods.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utils.c -o utils.o utils.c: In function ‘_get_twobit_signature’: utils.c:157:16: warning: ‘twobit_sign’ may be used uninitialized [-Wmaybe-uninitialized] 157 | return twobit_sign; | ^~~~~~~~~~~ utils.c:150:16: note: ‘twobit_sign’ was declared here 150 | int i, twobit_sign; | ^~~~~~~~~~~ utils.c: In function ‘_get_twobit_signature_at’: utils.c:174:16: warning: ‘twobit_sign’ may be used uninitialized [-Wmaybe-uninitialized] 174 | return twobit_sign; | ^~~~~~~~~~~ utils.c:164:19: note: ‘twobit_sign’ was declared here 164 | int i, j, twobit_sign; | ^~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c xscat.c -o xscat.o In file included from /usr/include/R/Rdefines.h:41, from /usr/lib64/R/library/S4Vectors/include/S4Vectors_defines.h:18, from /usr/lib64/R/library/IRanges/include/IRanges_defines.h:18, from ../inst/include/Biostrings_defines.h:18, from Biostrings.h:1, from xscat.c:1: xscat.c: In function ‘XString_xscat’: /usr/include/R/Rdefines.h:91:33: warning: ‘ans_length’ may be used uninitialized [-Wmaybe-uninitialized] 91 | #define NEW_RAW(n) Rf_allocVector(RAWSXP,n) | ^~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:18:20: note: ‘ans_length’ was declared here 18 | int nargs, ans_length, tag_offset, j; | ^~~~~~~~~~ xscat.c:52:23: warning: ‘ans_classname’ may be used uninitialized [-Wmaybe-uninitialized] 52 | PROTECT(ans = new_XRaw_from_tag(ans_classname, ans_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:20:21: note: ‘ans_classname’ was declared here 20 | const char *ans_classname; | ^~~~~~~~~~~~~ xscat.c: In function ‘XStringSet_xscat’: /usr/include/R/Rdefines.h:85:33: warning: ‘ans_length’ may be used uninitialized [-Wmaybe-uninitialized] 85 | #define NEW_INTEGER(n) Rf_allocVector(INTSXP,n) | ^~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:66:39: note: ‘ans_length’ was declared here 66 | int nargs, *arg_lengths, *ii, ans_length, i, j, *width; | ^~~~~~~~~~ xscat.c:108:23: warning: ‘ans_element_type’ may be used uninitialized [-Wmaybe-uninitialized] 108 | PROTECT(ans = _alloc_XStringSet(ans_element_type, ans_width)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:68:21: note: ‘ans_element_type’ was declared here 68 | const char *ans_element_type; | ^~~~~~~~~~~~~~~~ gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64/usr/lib64/R/library/00LOCK-Biostrings/00new/Biostrings/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning message: multiple methods tables found for ‘sort’ in method for ‘twoWayAlphabetFrequencyByQuality’ with signature ‘"QualityScaledXStringSet"’: no definition for class “QualityScaledXStringSet” Creating a new generic function for ‘strsplit’ in package ‘Biostrings’ Creating a generic function for ‘ls’ from package ‘base’ in package ‘Biostrings’ Creating a new generic function for ‘pattern’ in package ‘Biostrings’ Creating a new generic function for ‘offset’ in package ‘Biostrings’ ** help *** installing help indices converting help for package ‘Biostrings’ finding HTML links ... done AAString-class html AMINO_ACID_CODE html AlignedXStringSet-class html Biostrings-internals html DNAString-class html GENETIC_CODE html HNF4alpha html IUPAC_CODE_MAP html InDel-class html MIndex-class html MaskedXString-class html MultipleAlignment-class html finding level-2 HTML links ... done PDict-class html PairwiseAlignments-class html PairwiseAlignments-io html QualityScaledXStringSet-class html RNAString-class html XString-class html XStringPartialMatches-class html XStringQuality-class html XStringSet-class html XStringSet-comparison html XStringSet-io html XStringSetList-class html XStringViews-class html align-utils html chartr html detail html dinucleotideFrequencyTest html findPalindromes html getSeq html gregexpr2 html injectHardMask html letter html letterFrequency html longestConsecutive html lowlevel-matching html maskMotif html match-utils html matchLRPatterns html matchPDict-exact html matchPDict-inexact html matchPWM html matchPattern html matchProbePair html matchprobes html misc html needwunsQS html nucleotideFrequency html padAndClip html pairwiseAlignment html phiX174Phage html pid html pmatchPattern html replaceAt html replaceLetterAt html reverseComplement html seqinfo html stringDist html substitution_matrices html toComplex html translate html trimLRPatterns html xscat html yeastSEQCHR1 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: multiple methods tables found for ‘sort’ Warning: multiple methods tables found for ‘sort’ ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: multiple methods tables found for ‘sort’ Warning: multiple methods tables found for ‘sort’ ** testing if installed package keeps a record of temporary installation path * DONE (Biostrings) + test -d Biostrings/src + cd Biostrings/src + rm -f BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o Biostrings.so + rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64/usr/lib64/R/library/R.css + rm -f /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64/usr/lib64/R/library/Biostrings/doc/GenomeSearching.R + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.64.1-8.fc41 --unique-debug-suffix -2.64.1-8.fc41.aarch64 --unique-debug-src-base R-Biostrings-2.64.1-8.fc41.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Biostrings find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Biostrings-2.64.1-8.fc41.aarch64 807 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.GAerj3 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Biostrings-2.64.1-8.fc41.aarch64 Provides: R(Biostrings) = 2.64.1 R-Biostrings = 2.64.1-8.fc41 R-Biostrings(aarch-64) = 2.64.1-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.4 R(BiocGenerics) >= 0.37.0 R(GenomeInfoDb) R(IRanges) >= 2.30.1 R(S4Vectors) >= 0.27.12 R(XVector) >= 0.29.2 R(crayon) R(grDevices) R(graphics) R(methods) R(stats) R(utils) R-core >= 4.0.0 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) rtld(GNU_HASH) Suggests: R(BSgenome) >= 1.13.14 R(BSgenome.Celegans.UCSC.ce2) >= 1.3.11 R(BSgenome.Dmelanogaster.UCSC.dm3) >= 1.3.11 R(BSgenome.Hsapiens.UCSC.hg18) R(GenomicFeatures) >= 1.3.14 R(RUnit) R(affy) >= 1.41.3 R(affydata) >= 1.11.5 R(drosophila2probe) R(hgu133aprobe) R(hgu95av2cdf) R(hgu95av2probe) Enhances: R(Rmpi) Processing files: R-Biostrings-devel-2.64.1-8.fc41.aarch64 Provides: R-Biostrings-devel = 2.64.1-8.fc41 R-Biostrings-devel(aarch-64) = 2.64.1-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Biostrings-debugsource-2.64.1-8.fc41.aarch64 Provides: R-Biostrings-debugsource = 2.64.1-8.fc41 R-Biostrings-debugsource(aarch-64) = 2.64.1-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Biostrings-debuginfo-2.64.1-8.fc41.aarch64 Provides: R-Biostrings-debuginfo = 2.64.1-8.fc41 R-Biostrings-debuginfo(aarch-64) = 2.64.1-8.fc41 debuginfo(build-id) = af5a7c3ce82fa21ef4f4a85a4e4ec5d65e430a43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Biostrings-debugsource(aarch-64) = 2.64.1-8.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64 Wrote: /builddir/build/RPMS/R-Biostrings-devel-2.64.1-8.fc41.aarch64.rpm Wrote: /builddir/build/RPMS/R-Biostrings-debugsource-2.64.1-8.fc41.aarch64.rpm Wrote: /builddir/build/RPMS/R-Biostrings-debuginfo-2.64.1-8.fc41.aarch64.rpm Wrote: /builddir/build/RPMS/R-Biostrings-2.64.1-8.fc41.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.t8p0nG + umask 022 + cd /builddir/build/BUILD + cd Biostrings + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.uPX3aK + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Biostrings-SPECPARTS + rm -rf Biostrings Biostrings.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-Biostrings-2.64.1-8.fc41.src.rpm Finish: build phase for R-Biostrings-2.64.1-8.fc41.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-aarch64-1714053004.338640/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-aarch64-1714053004.338640/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-aarch64-1714053004.338640/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-8.fc41.src.rpm) Config(child) 1 minutes 59 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Biostrings-devel", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "aarch64" }, { "name": "R-Biostrings-debuginfo", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "aarch64" }, { "name": "R-Biostrings", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "aarch64" }, { "name": "R-Biostrings-debugsource", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "aarch64" }, { "name": "R-Biostrings", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "src" } ] } RPMResults finished