%global packname BSgenome %global Rvers 3.0.0 Name: R-%{packname} Version: 1.64.0 Release: 8%{dist} Summary: Infrastructure for Biostrings-based genome data packages License: Artistic-2.0 URL: http://bioconductor.org/packages/release/bioc/html/BSgenome.html Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildArch: noarch BuildRequires: R-devel >= %{Rvers} tex(latex) BuildRequires: R-BiocGenerics >= 0.13.8 R-S4Vectors-devel >= 0.17.28 R-IRanges-devel >= 2.13.16 BuildRequires: R-GenomeInfoDb >= 1.25.6 R-GenomicRanges >= 1.31.10 R-Biostrings-devel >= 2.47.6 BuildRequires: R-rtracklayer >= 1.39.7 BuildRequires: R-methods R-utils R-stats R-matrixStats R-XVector-devel >= 0.29.3 R-Rsamtools %description Infrastructure shared by all the Biostrings-based genome data packages %prep %setup -q -c -n %{packname} %build %install rm -rf %{buildroot} # architecture independant package mkdir -p %{buildroot}%{_datadir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_datadir}/R/library/R.css %check # The dependencies asked are: # 1- only 'suggests' # 2- really big # 3- contain only 'metadata' no code #%{_bindir}/R CMD check %{packname} %files %dir %{_datadir}/R/library/%{packname}/ %doc %{_datadir}/R/library/%{packname}/doc %doc %{_datadir}/R/library/%{packname}/DESCRIPTION %doc %{_datadir}/R/library/%{packname}/html %doc %{_datadir}/R/library/%{packname}/NEWS %{_datadir}/R/library/%{packname}/NAMESPACE %{_datadir}/R/library/%{packname}/extdata %{_datadir}/R/library/%{packname}/help %{_datadir}/R/library/%{packname}/R %{_datadir}/R/library/%{packname}/INDEX %{_datadir}/R/library/%{packname}/Meta %{_datadir}/R/library/%{packname}/pkgtemplates %changelog * Thu Apr 25 2024 Iñaki Úcar - 1.64.0-8 - R-maint-sig mass rebuild * Sat Apr 20 2024 Miroslav Suchý - 1.64.0-7 - convert license to SPDX * Mon Jan 22 2024 Fedora Release Engineering - 1.64.0-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jan 19 2024 Fedora Release Engineering - 1.64.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Wed Jul 19 2023 Fedora Release Engineering - 1.64.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Fri Apr 21 2023 Iñaki Úcar - 1.64.0-3 - R-maint-sig mass rebuild * Wed Jan 18 2023 Fedora Release Engineering - 1.64.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Sun Sep 04 2022 Iñaki Úcar - 1.64.0-1 - R 4.2.1, update to 1.64.0 * Wed Jul 20 2022 Fedora Release Engineering - 1.60.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jan 19 2022 Fedora Release Engineering - 1.60.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering - 1.60.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Thu Jun 17 2021 Tom Callaway - 1.60.0-1 - update to 1.60.0 - Rebuilt for R 4.1.0 * Wed Feb 3 2021 Tom Callaway - 1.58.0-1 - update to 1.58.0 * Mon Jan 25 2021 Fedora Release Engineering - 1.56.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Mon Jul 27 2020 Fedora Release Engineering - 1.56.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jun 8 2020 Tom Callaway - 1.56.0-1 - update to 1.56.0 - rebuild for R 4 * Tue Jan 28 2020 Fedora Release Engineering - 1.54.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Nov 7 2019 Tom Callaway - 1.54.0-1 - update to 1.54.0 * Mon Aug 12 2019 Elliott Sales de Andrade - 1.48.0-5 - Remove explicit dependencies provided by automatic dependency generator * Wed Jul 24 2019 Fedora Release Engineering - 1.48.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Thu Jan 31 2019 Fedora Release Engineering - 1.48.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Thu Jul 12 2018 Fedora Release Engineering - 1.48.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Tue Jul 10 2018 Pierre-Yves Chibon - 1.48.0-1 - Update toi 1.48.0 * Wed Feb 07 2018 Fedora Release Engineering - 1.38.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering - 1.38.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Fri Feb 10 2017 Fedora Release Engineering - 1.38.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Thu Feb 11 2016 pingou 1.38.0-1 - Update to version 1.38.0 * Wed Feb 03 2016 Fedora Release Engineering - 1.36.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Fri Jul 03 2015 pingou 1.36.2-1 - Update to version 1.36.2 - Add R-rtracklayer as BR and R * Tue Jun 16 2015 Fedora Release Engineering - 1.32.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Wed Jul 02 2014 pingou 1.32.0-1 - Update to version 1.32.0 - Add R-Rsamtools and R-bitops as R and BR * Fri Jun 06 2014 Fedora Release Engineering - 1.30.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Mon Jan 27 2014 pingou 1.30.0-1 - Update to version 1.30.0 * Fri Aug 02 2013 Fedora Release Engineering - 1.28.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Sun Apr 07 2013 pingou 1.28.0-1 - Update to version 1.28.0 * Wed Feb 13 2013 Fedora Release Engineering - 1.26.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Tue Nov 27 2012 pingou 1.26.1-1 - Update to version 1.26.1 * Wed Jul 18 2012 Fedora Release Engineering - 1.22.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Jan 12 2012 Fedora Release Engineering - 1.22.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Nov 9 2011 Tom Callaway 1.22.0-1 - update to 1.22.0 * Sat Jul 02 2011 pingou 1.20.0-1 - Update to version 1.20.0 * Mon Feb 07 2011 Fedora Release Engineering - 1.18.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Sat Jan 29 2011 pingou 1.18.3-1 - Update to version 1.18.3 * Mon Dec 20 2010 pingou 1.18.2-1 - Update to version 1.18.2 * Tue Oct 26 2010 pingou 1.18.0-1 - Update to version 1.18.0 * Sat Sep 11 2010 pingou 1.16.5-2 - Add R-GenomicRanges in R and BR * Sat Sep 11 2010 pingou 1.16.5-1 - Update to version 1.16.5 * Sat Jun 05 2010 pingou 1.16.1-1 - Update to version 1.16.1 - Update to R-2.11.0 - Remove post/postun - Update R and BR to R-core and R-devel - Change source0 and URL to a more stable form * Sat Nov 21 2009 pingou 1.14.2-1 - Update to 1.14.2 - Remove %%post and %%postun - Adapt %%files to R-2.10.0 * Fri Jul 24 2009 Fedora Release Engineering - 1.12.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Mon Jul 13 2009 pingou 1.12.3-1 - Update to 1.12.3 * Fri Jun 12 2009 pingou 1.12.2-1 - Update to 1.12.2 * Wed May 20 2009 pingou 1.12.0-2 - The NAMESPACE file is not a doc * Mon May 18 2009 pingou 1.12.0-1 - Update to 1.12.0 for Bioconductor 2.4 and R 2.9.0 - Remove the dependency on R-Biobase which is not needed * Wed Apr 01 2009 pingou 1.10.5-2 - Add R-Biostrings-devel as BR - Define and use the macro BioC for the bioconductor release * Fri Mar 13 2009 pingou 1.10.5-1 - initial package for Fedora