%global packname GenomeInfoDb %global __suggests_exclude ^R\\((BSgenome\\.Celegans\\.UCSC\\.ce2|BSgenome\\.Hsapiens\\.NCBI\\.GRCh38|BSgenome\\.Scerevisiae\\.UCSC\\.sacCer2|BiocStyle|GenomicFeatures|TxDb\\.Dmelanogaster\\.UCSC\\.dm3\\.ensGene)\\) Name: R-%{packname} Version: 1.32.3 Release: 8%{?dist} Summary: Utilities for manipulating chromosome and other 'seqname' identifiers License: Artistic-2.0 URL: http://www.bioconductor.org/packages/release/bioc/html/GenomeInfoDb.html Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz Requires: tex(latex) BuildRequires: R-devel >= 4.0.0 R-methods R-stats4 R-stats R-utils R-BiocGenerics >= 0.37.0 BuildRequires: R-S4Vectors-devel >= 0.25.12 R-IRanges-devel >= 2.13.12 R-GenomeInfoDbData BuildRequires: R-RCurl BuildArch: noarch %description The Seqnames package contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order. %prep %setup -c -q -n %{packname} sed -i 's/\r//' GenomeInfoDb/NEWS %build %install mkdir -p %{buildroot}%{_datadir}/R/library %{_bindir}/R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf $RPM_BUILD_ROOT%{_datadir}/R/library/R.css sed -i 's/\r//' %{buildroot}%{_datadir}/R/library/%{packname}/doc/Accept-organism-for-GenomeInfoDb.Rnw sed -i 's/\r//' %{buildroot}%{_datadir}/R/library/%{packname}/doc/GenomeInfoDb.Rnw %check # All sorts of missing Suggests prevents this from working. # %%{_bindir}/R CMD check %%{packname} %files %dir %{_datadir}/R/library/%{packname} %doc %{_datadir}/R/library/%{packname}/html %{_datadir}/R/library/%{packname}/DESCRIPTION %doc %{_datadir}/R/library/%{packname}/NEWS %doc %{_datadir}/R/library/%{packname}/doc/ %{_datadir}/R/library/%{packname}/INDEX %{_datadir}/R/library/%{packname}/NAMESPACE %{_datadir}/R/library/%{packname}/Meta %{_datadir}/R/library/%{packname}/R %{_datadir}/R/library/%{packname}/extdata/ %{_datadir}/R/library/%{packname}/help %{_datadir}/R/library/%{packname}/registered/ %{_datadir}/R/library/%{packname}/unitTests/ %changelog * Thu Apr 25 2024 Iñaki Úcar - 1.32.3-8 - R-maint-sig mass rebuild * Sat Apr 20 2024 Miroslav Suchý - 1.32.3-7 - convert license to SPDX * Mon Jan 22 2024 Fedora Release Engineering - 1.32.3-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jan 19 2024 Fedora Release Engineering - 1.32.3-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Wed Jul 19 2023 Fedora Release Engineering - 1.32.3-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Fri Apr 21 2023 Iñaki Úcar - 1.32.3-3 - R-maint-sig mass rebuild * Wed Jan 18 2023 Fedora Release Engineering - 1.32.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Sat Sep 3 2022 Tom Callaway - 1.32.3-1 - update to 1.32.3 - rebuild for R 4.2.1 * Wed Jul 20 2022 Fedora Release Engineering - 1.28.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jan 19 2022 Fedora Release Engineering - 1.28.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering - 1.28.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Wed Jun 16 2021 Tom Callaway - 1.28.0-1 - update to 1.28.0 - Rebuilt for R 4.1.0 * Wed Feb 3 2021 Tom Callaway - 1.26.2-1 - update to 1.26.2 * Mon Jan 25 2021 Fedora Release Engineering - 1.24.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Mon Jul 27 2020 Fedora Release Engineering - 1.24.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jun 8 2020 Tom Callaway - 1.24.0-1 - update to 1.24.0 - rebuild for R 4 * Tue Jan 28 2020 Fedora Release Engineering - 1.22.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Nov 21 2019 Elliott Sales de Andrade - 1.22.0-2 - Exclude Suggests for unavailable packages * Wed Nov 6 2019 Tom Callaway - 1.22.0-1 - update to 1.22.0 * Mon Aug 12 2019 Elliott Sales de Andrade - 1.16.0-5 - Remove explicit dependencies provided by automatic dependency generator * Wed Jul 24 2019 Fedora Release Engineering - 1.16.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Thu Jan 31 2019 Fedora Release Engineering - 1.16.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Thu Jul 12 2018 Fedora Release Engineering - 1.16.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Thu May 17 2018 Tom Callaway - 1.16.0-1 - update to 1.16.0 * Wed Mar 14 2018 Tom Callaway - 1.14.0-1 - update to 1.14.0 * Wed Feb 07 2018 Fedora Release Engineering - 1.12.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering - 1.12.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Tue May 30 2017 Tom Callaway - 1.12.1-1 - update to 1.12.1 * Fri Feb 10 2017 Fedora Release Engineering - 1.4.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Wed Feb 03 2016 Fedora Release Engineering - 1.4.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Tue Jun 16 2015 Fedora Release Engineering - 1.4.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri May 29 2015 Tom Callaway - 1.4.0-1 - update to 1.4.0 * Mon Jun 9 2014 Tom Callaway - 1.0.2-1 - initial package