Mock Version: 4.1
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target i686 --nodeps /builddir/build/SPECS/ProDy.spec'], chrootPath='/var/lib/mock/fedora-rawhide-i686-1691542909.810867/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f8558badc50>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vqvh8fv3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vqvh8fv3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b5c3f86bd7f9449a9277b66b57b650f5', '-D', '/var/lib/mock/fedora-rawhide-i686-1691542909.810867/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vqvh8fv3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target i686 --nodeps /builddir/build/SPECS/ProDy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1689724800
Wrote: /builddir/build/SRPMS/ProDy-2.4.0-4.fc40.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target i686 --nodeps /builddir/build/SPECS/ProDy.spec'], chrootPath='/var/lib/mock/fedora-rawhide-i686-1691542909.810867/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f8558badc50>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vqvh8fv3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vqvh8fv3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '94521779d43546cd98468fdf28371098', '-D', '/var/lib/mock/fedora-rawhide-i686-1691542909.810867/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vqvh8fv3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target i686 --nodeps /builddir/build/SPECS/ProDy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1689724800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.7ki5ON
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf ProDy-2.4.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd ProDy-2.4.0
+ rm -rf /builddir/build/BUILD/ProDy-2.4.0-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.0-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';'
+ find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.X5iYTB
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd ProDy-2.4.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP'
running build
running build_py
creating build
creating build/lib.linux-i686-cpython-312
creating build/lib.linux-i686-cpython-312/prody
copying prody/__init__.py -> build/lib.linux-i686-cpython-312/prody
creating build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/subset.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/selection.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/select.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/segment.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/residue.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/pointer.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/nbexclusion.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/improper.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/hierview.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/functions.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/flags.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/fields.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/donor.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/dihedral.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/crossterm.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/chain.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/bond.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/atommap.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/atomic.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/atomgroup.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/atom.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/angle.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/acceptor.py -> build/lib.linux-i686-cpython-312/prody/atomic
copying prody/atomic/__init__.py -> build/lib.linux-i686-cpython-312/prody/atomic
creating build/lib.linux-i686-cpython-312/prody/database
copying prody/database/uniprot.py -> build/lib.linux-i686-cpython-312/prody/database
copying prody/database/quartataweb.py -> build/lib.linux-i686-cpython-312/prody/database
copying prody/database/pfam.py -> build/lib.linux-i686-cpython-312/prody/database
copying prody/database/goa.py -> build/lib.linux-i686-cpython-312/prody/database
copying prody/database/dali.py -> build/lib.linux-i686-cpython-312/prody/database
copying prody/database/cath.py -> build/lib.linux-i686-cpython-312/prody/database
copying prody/database/__init__.py -> build/lib.linux-i686-cpython-312/prody/database
creating build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/vmdfile.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/signature.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/sampling.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/rtb.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/plotting.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/perturb.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/pca.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/nmdfile.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/nma.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/modeset.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/mode.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/mechstiff.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/imanm.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/heatmapper.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/gnm.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/gamma.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/functions.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/exgnm.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/exanm.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/essa.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/entropy.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/editing.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/compare.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/clustenm.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/bbenm.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/anm.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/analysis.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/adaptive.py -> build/lib.linux-i686-cpython-312/prody/dynamics
copying prody/dynamics/__init__.py -> build/lib.linux-i686-cpython-312/prody/dynamics
creating build/lib.linux-i686-cpython-312/prody/ensemble
copying prody/ensemble/pdbensemble.py -> build/lib.linux-i686-cpython-312/prody/ensemble
copying prody/ensemble/functions.py -> build/lib.linux-i686-cpython-312/prody/ensemble
copying prody/ensemble/ensemble.py -> build/lib.linux-i686-cpython-312/prody/ensemble
copying prody/ensemble/conformation.py -> build/lib.linux-i686-cpython-312/prody/ensemble
copying prody/ensemble/__init__.py -> build/lib.linux-i686-cpython-312/prody/ensemble
creating build/lib.linux-i686-cpython-312/prody/kdtree
copying prody/kdtree/kdtree.py -> build/lib.linux-i686-cpython-312/prody/kdtree
copying prody/kdtree/__init__.py -> build/lib.linux-i686-cpython-312/prody/kdtree
creating build/lib.linux-i686-cpython-312/prody/measure
copying prody/measure/transform.py -> build/lib.linux-i686-cpython-312/prody/measure
copying prody/measure/measure.py -> build/lib.linux-i686-cpython-312/prody/measure
copying prody/measure/contacts.py -> build/lib.linux-i686-cpython-312/prody/measure
copying prody/measure/__init__.py -> build/lib.linux-i686-cpython-312/prody/measure
creating build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/wwpdb.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/stride.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/starfile.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/pdbfile.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/pdbclusters.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/localpdb.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/header.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/functions.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/emdfile.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/dssp.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/compare.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/cifheader.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/ciffile.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/blastpdb.py -> build/lib.linux-i686-cpython-312/prody/proteins
copying prody/proteins/__init__.py -> build/lib.linux-i686-cpython-312/prody/proteins
creating build/lib.linux-i686-cpython-312/prody/sequence
copying prody/sequence/sequence.py -> build/lib.linux-i686-cpython-312/prody/sequence
copying prody/sequence/plotting.py -> build/lib.linux-i686-cpython-312/prody/sequence
copying prody/sequence/msafile.py -> build/lib.linux-i686-cpython-312/prody/sequence
copying prody/sequence/msa.py -> build/lib.linux-i686-cpython-312/prody/sequence
copying prody/sequence/analysis.py -> build/lib.linux-i686-cpython-312/prody/sequence
copying prody/sequence/__init__.py -> build/lib.linux-i686-cpython-312/prody/sequence
creating build/lib.linux-i686-cpython-312/prody/trajectory
copying prody/trajectory/trajfile.py -> build/lib.linux-i686-cpython-312/prody/trajectory
copying prody/trajectory/trajectory.py -> build/lib.linux-i686-cpython-312/prody/trajectory
copying prody/trajectory/trajbase.py -> build/lib.linux-i686-cpython-312/prody/trajectory
copying prody/trajectory/psffile.py -> build/lib.linux-i686-cpython-312/prody/trajectory
copying prody/trajectory/frame.py -> build/lib.linux-i686-cpython-312/prody/trajectory
copying prody/trajectory/dcdfile.py -> build/lib.linux-i686-cpython-312/prody/trajectory
copying prody/trajectory/__init__.py -> build/lib.linux-i686-cpython-312/prody/trajectory
creating build/lib.linux-i686-cpython-312/prody/chromatin
copying prody/chromatin/straw.py -> build/lib.linux-i686-cpython-312/prody/chromatin
copying prody/chromatin/norm.py -> build/lib.linux-i686-cpython-312/prody/chromatin
copying prody/chromatin/hic.py -> build/lib.linux-i686-cpython-312/prody/chromatin
copying prody/chromatin/functions.py -> build/lib.linux-i686-cpython-312/prody/chromatin
copying prody/chromatin/cluster.py -> build/lib.linux-i686-cpython-312/prody/chromatin
copying prody/chromatin/__init__.py -> build/lib.linux-i686-cpython-312/prody/chromatin
creating build/lib.linux-i686-cpython-312/prody/compounds
copying prody/compounds/pdbligands.py -> build/lib.linux-i686-cpython-312/prody/compounds
copying prody/compounds/functions.py -> build/lib.linux-i686-cpython-312/prody/compounds
copying prody/compounds/ccd.py -> build/lib.linux-i686-cpython-312/prody/compounds
copying prody/compounds/bird.py -> build/lib.linux-i686-cpython-312/prody/compounds
copying prody/compounds/__init__.py -> build/lib.linux-i686-cpython-312/prody/compounds
creating build/lib.linux-i686-cpython-312/prody/domain_decomposition
copying prody/domain_decomposition/spectrus.py -> build/lib.linux-i686-cpython-312/prody/domain_decomposition
copying prody/domain_decomposition/__init__.py -> build/lib.linux-i686-cpython-312/prody/domain_decomposition
creating build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/settings.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/seqtools.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/pathtools.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/misctools.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/logger.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/legacy.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/laptools.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/eigtools.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/drawtools.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/doctools.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/checkers.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/catchall.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/__init__.py -> build/lib.linux-i686-cpython-312/prody/utilities
copying prody/utilities/TreeConstruction.py -> build/lib.linux-i686-cpython-312/prody/utilities
creating build/lib.linux-i686-cpython-312/prody/apps
copying prody/apps/apptools.py -> build/lib.linux-i686-cpython-312/prody/apps
copying prody/apps/__init__.py -> build/lib.linux-i686-cpython-312/prody/apps
creating build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
copying prody/apps/prody_apps/__init__.py -> build/lib.linux-i686-cpython-312/prody/apps/prody_apps
creating build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
copying prody/apps/evol_apps/__init__.py -> build/lib.linux-i686-cpython-312/prody/apps/evol_apps
creating build/lib.linux-i686-cpython-312/prody/tests
copying prody/tests/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests
creating build/lib.linux-i686-cpython-312/prody/tests/apps
copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-i686-cpython-312/prody/tests/apps
copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-i686-cpython-312/prody/tests/apps
copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-i686-cpython-312/prody/tests/apps
copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-i686-cpython-312/prody/tests/apps
copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-i686-cpython-312/prody/tests/apps
copying prody/tests/apps/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/apps
creating build/lib.linux-i686-cpython-312/prody/tests/atomic
copying prody/tests/atomic/test_subset.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic
copying prody/tests/atomic/test_select.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic
copying prody/tests/atomic/test_hierview.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic
copying prody/tests/atomic/test_fragment.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic
copying prody/tests/atomic/test_atommap.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic
copying prody/tests/atomic/test_atomic.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic
copying prody/tests/atomic/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/atomic
creating build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
creating build/lib.linux-i686-cpython-312/prody/tests/dynamics
copying prody/tests/dynamics/test_signature.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics
copying prody/tests/dynamics/test_pca.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics
copying prody/tests/dynamics/test_enms.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics
copying prody/tests/dynamics/test_editing.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics
copying prody/tests/dynamics/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/dynamics
creating build/lib.linux-i686-cpython-312/prody/tests/ensemble
copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble
copying prody/tests/ensemble/test_functions.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble
copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble
copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble
copying prody/tests/ensemble/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/ensemble
creating build/lib.linux-i686-cpython-312/prody/tests/kdtree
copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-i686-cpython-312/prody/tests/kdtree
copying prody/tests/kdtree/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/kdtree
creating build/lib.linux-i686-cpython-312/prody/tests/measure
copying prody/tests/measure/test_transform.py -> build/lib.linux-i686-cpython-312/prody/tests/measure
copying prody/tests/measure/test_measure.py -> build/lib.linux-i686-cpython-312/prody/tests/measure
copying prody/tests/measure/test_contacts.py -> build/lib.linux-i686-cpython-312/prody/tests/measure
copying prody/tests/measure/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/measure
creating build/lib.linux-i686-cpython-312/prody/tests/proteins
copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins
copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins
copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins
copying prody/tests/proteins/test_header.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins
copying prody/tests/proteins/test_dssp.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins
copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins
copying prody/tests/proteins/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/proteins
creating build/lib.linux-i686-cpython-312/prody/tests/sequence
copying prody/tests/sequence/test_sequence.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence
copying prody/tests/sequence/test_msafile.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence
copying prody/tests/sequence/test_msa.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence
copying prody/tests/sequence/test_analysis.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence
copying prody/tests/sequence/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/sequence
creating build/lib.linux-i686-cpython-312/prody/tests/trajectory
copying prody/tests/trajectory/test_frame.py -> build/lib.linux-i686-cpython-312/prody/tests/trajectory
copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-i686-cpython-312/prody/tests/trajectory
copying prody/tests/trajectory/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/trajectory
creating build/lib.linux-i686-cpython-312/prody/tests/utilities
copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-i686-cpython-312/prody/tests/utilities
copying prody/tests/utilities/test_misctools.py -> build/lib.linux-i686-cpython-312/prody/tests/utilities
copying prody/tests/utilities/test_checkers.py -> build/lib.linux-i686-cpython-312/prody/tests/utilities
copying prody/tests/utilities/__init__.py -> build/lib.linux-i686-cpython-312/prody/tests/utilities
creating build/lib.linux-i686-cpython-312/prody/utilities/datafiles
copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-i686-cpython-312/prody/utilities/datafiles
copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-i686-cpython-312/prody/utilities/datafiles
copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-i686-cpython-312/prody/tests/datafiles
running build_ext
building 'prody.dynamics.rtbtools' extension
creating build/temp.linux-i686-cpython-312
creating build/temp.linux-i686-cpython-312/prody
creating build/temp.linux-i686-cpython-312/prody/dynamics
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/rtbtools.c -o build/temp.linux-i686-cpython-312/prody/dynamics/rtbtools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-i686-cpython-312/prody/dynamics/rtbtools.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/dynamics/rtbtools.cpython-312-i386-linux-gnu.so
building 'prody.dynamics.smtools' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/dynamics/smtools.c -o build/temp.linux-i686-cpython-312/prody/dynamics/smtools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-i686-cpython-312/prody/dynamics/smtools.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/dynamics/smtools.cpython-312-i386-linux-gnu.so
building 'prody.sequence.msatools' extension
creating build/temp.linux-i686-cpython-312/prody/sequence
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msatools.c -o build/temp.linux-i686-cpython-312/prody/sequence/msatools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-i686-cpython-312/prody/sequence/msatools.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/sequence/msatools.cpython-312-i386-linux-gnu.so
building 'prody.sequence.msaio' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/msaio.c -o build/temp.linux-i686-cpython-312/prody/sequence/msaio.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-i686-cpython-312/prody/sequence/msaio.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/sequence/msaio.cpython-312-i386-linux-gnu.so
building 'prody.sequence.seqtools' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/sequence/seqtools.c -o build/temp.linux-i686-cpython-312/prody/sequence/seqtools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-i686-cpython-312/prody/sequence/seqtools.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/sequence/seqtools.cpython-312-i386-linux-gnu.so
building 'prody.kdtree._CKDTree' extension
creating build/temp.linux-i686-cpython-312/prody/kdtree
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTree.c -o build/temp.linux-i686-cpython-312/prody/kdtree/KDTree.o
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-i686-cpython-312/prody/kdtree/KDTreemodule.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-i686-cpython-312/prody/kdtree/KDTree.o build/temp.linux-i686-cpython-312/prody/kdtree/KDTreemodule.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/kdtree/_CKDTree.cpython-312-i386-linux-gnu.so
building 'prody.proteins.ccealign' extension
creating build/temp.linux-i686-cpython-312/prody/proteins
creating build/temp.linux-i686-cpython-312/prody/proteins/ccealign
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Iprody/utilities/tnt -I/usr/include/python3.12 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-i686-cpython-312/prody/proteins/ccealign/ccealignmodule.o
g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-i686-cpython-312/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib -o build/lib.linux-i686-cpython-312/prody/proteins/ccealign.cpython-312-i386-linux-gnu.so
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Dy6GZ9
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386
++ dirname /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd ProDy-2.4.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386 --prefix /usr
running install
/usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer, pypa/build or
        other standards-based tools.
        Follow the current Python packaging guidelines when building
        Python RPM packages.
        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
        and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
        ********************************************************************************
!!
  self.initialize_options()
running install_lib
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities
copying build/lib.linux-i686-cpython-312/prody/tests/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities
copying build/lib.linux-i686-cpython-312/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities
copying build/lib.linux-i686-cpython-312/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities
copying build/lib.linux-i686-cpython-312/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory
copying build/lib.linux-i686-cpython-312/prody/tests/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory
copying build/lib.linux-i686-cpython-312/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory
copying build/lib.linux-i686-cpython-312/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence
copying build/lib.linux-i686-cpython-312/prody/tests/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence
copying build/lib.linux-i686-cpython-312/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence
copying build/lib.linux-i686-cpython-312/prody/tests/sequence/test_msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence
copying build/lib.linux-i686-cpython-312/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence
copying build/lib.linux-i686-cpython-312/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins
copying build/lib.linux-i686-cpython-312/prody/tests/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins
copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins
copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins
copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_header.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins
copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins
copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins
copying build/lib.linux-i686-cpython-312/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure
copying build/lib.linux-i686-cpython-312/prody/tests/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure
copying build/lib.linux-i686-cpython-312/prody/tests/measure/test_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure
copying build/lib.linux-i686-cpython-312/prody/tests/measure/test_measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure
copying build/lib.linux-i686-cpython-312/prody/tests/measure/test_transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree
copying build/lib.linux-i686-cpython-312/prody/tests/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree
copying build/lib.linux-i686-cpython-312/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble
copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble
copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble
copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble
copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble
copying build/lib.linux-i686-cpython-312/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics
copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics
copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics
copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics
copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics
copying build/lib.linux-i686-cpython-312/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
copying build/lib.linux-i686-cpython-312/prody/tests/datafiles/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic
copying build/lib.linux-i686-cpython-312/prody/tests/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic
copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic
copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic
copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic
copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic
copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic
copying build/lib.linux-i686-cpython-312/prody/tests/atomic/test_subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps
copying build/lib.linux-i686-cpython-312/prody/tests/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps
copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps
copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps
copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps
copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps
copying build/lib.linux-i686-cpython-312/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps
copying build/lib.linux-i686-cpython-312/prody/tests/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
copying build/lib.linux-i686-cpython-312/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps
copying build/lib.linux-i686-cpython-312/prody/apps/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps
copying build/lib.linux-i686-cpython-312/prody/apps/apptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/datafiles
copying build/lib.linux-i686-cpython-312/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/datafiles
copying build/lib.linux-i686-cpython-312/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/datafiles
copying build/lib.linux-i686-cpython-312/prody/utilities/TreeConstruction.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/catchall.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/checkers.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/doctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/drawtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/eigtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/laptools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/legacy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/logger.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/misctools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/pathtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/seqtools.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
copying build/lib.linux-i686-cpython-312/prody/utilities/settings.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition
copying build/lib.linux-i686-cpython-312/prody/domain_decomposition/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition
copying build/lib.linux-i686-cpython-312/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds
copying build/lib.linux-i686-cpython-312/prody/compounds/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds
copying build/lib.linux-i686-cpython-312/prody/compounds/bird.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds
copying build/lib.linux-i686-cpython-312/prody/compounds/ccd.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds
copying build/lib.linux-i686-cpython-312/prody/compounds/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds
copying build/lib.linux-i686-cpython-312/prody/compounds/pdbligands.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin
copying build/lib.linux-i686-cpython-312/prody/chromatin/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin
copying build/lib.linux-i686-cpython-312/prody/chromatin/cluster.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin
copying build/lib.linux-i686-cpython-312/prody/chromatin/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin
copying build/lib.linux-i686-cpython-312/prody/chromatin/hic.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin
copying build/lib.linux-i686-cpython-312/prody/chromatin/norm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin
copying build/lib.linux-i686-cpython-312/prody/chromatin/straw.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory
copying build/lib.linux-i686-cpython-312/prody/trajectory/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory
copying build/lib.linux-i686-cpython-312/prody/trajectory/dcdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory
copying build/lib.linux-i686-cpython-312/prody/trajectory/frame.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory
copying build/lib.linux-i686-cpython-312/prody/trajectory/psffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory
copying build/lib.linux-i686-cpython-312/prody/trajectory/trajbase.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory
copying build/lib.linux-i686-cpython-312/prody/trajectory/trajectory.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory
copying build/lib.linux-i686-cpython-312/prody/trajectory/trajfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
copying build/lib.linux-i686-cpython-312/prody/sequence/seqtools.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
copying build/lib.linux-i686-cpython-312/prody/sequence/msaio.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
copying build/lib.linux-i686-cpython-312/prody/sequence/msatools.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
copying build/lib.linux-i686-cpython-312/prody/sequence/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
copying build/lib.linux-i686-cpython-312/prody/sequence/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
copying build/lib.linux-i686-cpython-312/prody/sequence/msa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
copying build/lib.linux-i686-cpython-312/prody/sequence/msafile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
copying build/lib.linux-i686-cpython-312/prody/sequence/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
copying build/lib.linux-i686-cpython-312/prody/sequence/sequence.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/ccealign.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/blastpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/ciffile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/cifheader.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/dssp.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/emdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/header.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/localpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/pdbclusters.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/pdbfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/starfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/stride.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
copying build/lib.linux-i686-cpython-312/prody/proteins/wwpdb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/measure
copying build/lib.linux-i686-cpython-312/prody/measure/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/measure
copying build/lib.linux-i686-cpython-312/prody/measure/contacts.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/measure
copying build/lib.linux-i686-cpython-312/prody/measure/measure.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/measure
copying build/lib.linux-i686-cpython-312/prody/measure/transform.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/measure
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree
copying build/lib.linux-i686-cpython-312/prody/kdtree/_CKDTree.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree
copying build/lib.linux-i686-cpython-312/prody/kdtree/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree
copying build/lib.linux-i686-cpython-312/prody/kdtree/kdtree.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble
copying build/lib.linux-i686-cpython-312/prody/ensemble/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble
copying build/lib.linux-i686-cpython-312/prody/ensemble/conformation.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble
copying build/lib.linux-i686-cpython-312/prody/ensemble/ensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble
copying build/lib.linux-i686-cpython-312/prody/ensemble/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble
copying build/lib.linux-i686-cpython-312/prody/ensemble/pdbensemble.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/smtools.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/rtbtools.cpython-312-i386-linux-gnu.so -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/adaptive.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/analysis.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/anm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/bbenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/clustenm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/compare.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/editing.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/entropy.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/essa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/exanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/exgnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/gamma.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/gnm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/heatmapper.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/imanm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/mechstiff.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/mode.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/modeset.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/nma.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/nmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/pca.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/perturb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/plotting.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/rtb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/sampling.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/signature.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
copying build/lib.linux-i686-cpython-312/prody/dynamics/vmdfile.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database
copying build/lib.linux-i686-cpython-312/prody/database/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database
copying build/lib.linux-i686-cpython-312/prody/database/cath.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database
copying build/lib.linux-i686-cpython-312/prody/database/dali.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database
copying build/lib.linux-i686-cpython-312/prody/database/goa.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database
copying build/lib.linux-i686-cpython-312/prody/database/pfam.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database
copying build/lib.linux-i686-cpython-312/prody/database/quartataweb.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database
copying build/lib.linux-i686-cpython-312/prody/database/uniprot.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database
creating /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/acceptor.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/angle.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/atom.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/atomgroup.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/atomic.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/atommap.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/bond.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/chain.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/crossterm.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/dihedral.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/donor.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/fields.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/flags.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/functions.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/hierview.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/improper.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/nbexclusion.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/pointer.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/residue.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/segment.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/select.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/selection.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/atomic/subset.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic
copying build/lib.linux-i686-cpython-312/prody/__init__.py -> /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/tests/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/apps/apptools.py to apptools.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/catchall.py to catchall.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/checkers.py to checkers.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/doctools.py to doctools.cpython-312.pyc
/usr/lib/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i'
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/drawtools.py to drawtools.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/eigtools.py to eigtools.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/laptools.py to laptools.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/legacy.py to legacy.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/logger.py to logger.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/misctools.py to misctools.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/pathtools.py to pathtools.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/seqtools.py to seqtools.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/utilities/settings.py to settings.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/bird.py to bird.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/ccd.py to ccd.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/functions.py to functions.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/cluster.py to cluster.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/functions.py to functions.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/hic.py to hic.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/norm.py to norm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/chromatin/straw.py to straw.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/frame.py to frame.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/psffile.py to psffile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/analysis.py to analysis.cpython-312.pyc
/usr/lib/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/msa.py to msa.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/msafile.py to msafile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/plotting.py to plotting.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/sequence/sequence.py to sequence.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/ciffile.py to ciffile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/cifheader.py to cifheader.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/compare.py to compare.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/dssp.py to dssp.cpython-312.pyc
/usr/lib/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/emdfile.py to emdfile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/functions.py to functions.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/header.py to header.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py to localpdb.cpython-312.pyc
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/starfile.py to starfile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/stride.py to stride.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/measure/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/measure/contacts.py to contacts.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/measure/measure.py to measure.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/measure/transform.py to transform.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/conformation.py to conformation.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/functions.py to functions.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/analysis.py to analysis.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/anm.py to anm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/compare.py to compare.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/editing.py to editing.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/entropy.py to entropy.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/essa.py to essa.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/exanm.py to exanm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/functions.py to functions.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/gamma.py to gamma.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/gnm.py to gnm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/imanm.py to imanm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/mode.py to mode.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/modeset.py to modeset.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/nma.py to nma.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/pca.py to pca.cpython-312.pyc
/usr/lib/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/perturb.py to perturb.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/plotting.py to plotting.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/rtb.py to rtb.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/sampling.py to sampling.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/signature.py to signature.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database/cath.py to cath.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database/dali.py to dali.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database/goa.py to goa.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database/pfam.py to pfam.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database/quartataweb.py to quartataweb.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/database/uniprot.py to uniprot.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/acceptor.py to acceptor.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/angle.py to angle.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/atom.py to atom.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/atomic.py to atomic.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/atommap.py to atommap.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/bond.py to bond.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/chain.py to chain.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/crossterm.py to crossterm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/dihedral.py to dihedral.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/donor.py to donor.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/fields.py to fields.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/flags.py to flags.cpython-312.pyc
/usr/lib/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/functions.py to functions.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/hierview.py to hierview.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/improper.py to improper.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/pointer.py to pointer.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/residue.py to residue.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/segment.py to segment.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/select.py to select.cpython-312.pyc
/usr/lib/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/selection.py to selection.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/atomic/subset.py to subset.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/prody/__init__.py to __init__.cpython-312.pyc
writing byte-compilation script '/tmp/tmpcsan47ah.py'
/usr/bin/python3 /tmp/tmpcsan47ah.py
/usr/lib/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i'
/usr/lib/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
/usr/lib/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
removing /tmp/tmpcsan47ah.py
running install_egg_info
running egg_info
creating ProDy.egg-info
writing ProDy.egg-info/PKG-INFO
writing dependency_links to ProDy.egg-info/dependency_links.txt
writing entry points to ProDy.egg-info/entry_points.txt
writing requirements to ProDy.egg-info/requires.txt
writing top-level names to ProDy.egg-info/top_level.txt
writing manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'prody/*/*/*.c'
warning: no files found matching 'prody/*/*.cpp'
warning: no files found matching 'prody/utilities/datafiles/*.txt'
adding license file 'LICENSE.rst'
writing manifest file 'ProDy.egg-info/SOURCES.txt'
Copying ProDy.egg-info to /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12/site-packages/ProDy-2.4.0-py3.12.egg-info
running install_scripts
Installing evol script to /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin
Installing prody script to /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin
+ rm -rfv /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin/__pycache__
+ mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin
+ rm -f /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin/evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin/prody
+ cd scripts
+ cp -pr ./prody ./python3.12-prody
+ cp -pr ./evol ./python3.12-evol
+ sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.12-prody ./python3.12-evol
+ for i in prody-3.12
+ touch -r ./python3.12-prody prody-3.12
+ install -p prody-3.12 /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin
+ install -p ./prody /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin
+ install -p ./python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin
+ ln -sf /usr/bin/python3.12-prody /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin/prody-3.12
+ for i in evol-3.12
+ touch -r ./python3.12-evol evol-3.12
+ install -p evol-3.12 /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin
+ install -p ./evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin
+ install -p ./python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin
+ ln -sf /usr/bin/python3.12-evol /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/bin/evol-3.12
+ cd ..
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.4.0-4.fc40 --unique-debug-suffix -2.4.0-4.fc40.i386 --unique-debug-src-base ProDy-2.4.0-4.fc40.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.0
find-debuginfo: starting
Extracting debug info from 7 files
DWARF-compressing 7 files
sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.0-4.fc40.i386
464 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/debug/usr/lib/python3.12 using python3.12
Bytecompiling .py files below /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/lib/python3.12 using python3.12
/usr/lib/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib/python3.12/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
/usr/lib/python3.12/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib/python3.12/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib/python3.12/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
/usr/lib/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib/python3.12/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.12/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
/usr/lib/python3.12/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
/usr/lib/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i'
/usr/lib/python3.12/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i'
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: python3-ProDy-2.4.0-4.fc40.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.fc6VyJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd ProDy-2.4.0
+ DOCDIR=/builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/share/doc/python3-ProDy
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/share/doc/python3-ProDy
+ cp -pr /builddir/build/BUILD/ProDy-2.4.0/README.rst /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/share/doc/python3-ProDy
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.A0y2kL
+ umask 022
+ cd /builddir/build/BUILD
+ cd ProDy-2.4.0
+ LICENSEDIR=/builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/share/licenses/python3-ProDy
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/share/licenses/python3-ProDy
+ cp -pr /builddir/build/BUILD/ProDy-2.4.0/LICENSE.rst /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386/usr/share/licenses/python3-ProDy
+ RPM_EC=0
++ jobs -p
+ exit 0
warning: absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol
warning: absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody
Provides: ProDy = 0:2.4.0-4.fc40 python-ProDy = 2.4.0-4.fc40 python3-ProDy = 2.4.0-4.fc40 python3-ProDy(x86-32) = 2.4.0-4.fc40 python3.12-ProDy = 2.4.0-4.fc40 python3.12dist(prody) = 2.4 python3dist(prody) = 2.4
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 python(abi) = 3.12 python3.12dist(biopython) python3.12dist(numpy) >= 1.10 python3.12dist(pyparsing) python3.12dist(scipy) python3.12dist(setuptools)
Obsoletes: python-ProDy < 2.4.0-4.fc40
Processing files: ProDy-debugsource-2.4.0-4.fc40.i686
Provides: ProDy-debugsource = 2.4.0-4.fc40 ProDy-debugsource(x86-32) = 2.4.0-4.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-ProDy-debuginfo-2.4.0-4.fc40.i686
Provides: debuginfo(build-id) = 26179b8e20e4eb9440d1565343cf068ee4f945cb debuginfo(build-id) = 31323576b842052c74acffca2d2a75fcd5e73fc7 debuginfo(build-id) = 3cdc5ecb89fa872495a55c15dc742c2b21dc656a debuginfo(build-id) = 4650393092a1f915562272e02d293c837f934569 debuginfo(build-id) = 4921a440bc3c9761303455646b94048455a0c9b5 debuginfo(build-id) = 5c62815ec89847bff9401086cf031a3374b74fb3 debuginfo(build-id) = ccafa9b73b36f7154a6ffdc4183495100de68fcd python-ProDy-debuginfo = 2.4.0-4.fc40 python3-ProDy-debuginfo = 2.4.0-4.fc40 python3-ProDy-debuginfo(x86-32) = 2.4.0-4.fc40 python3.12-ProDy-debuginfo = 2.4.0-4.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: ProDy-debugsource(x86-32) = 2.4.0-4.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386
Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.0-4.fc40.i686.rpm
Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.0-4.fc40.i686.rpm
Wrote: /builddir/build/RPMS/python3-ProDy-2.4.0-4.fc40.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.c0Pavb
+ umask 022
+ cd /builddir/build/BUILD
+ cd ProDy-2.4.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/ProDy-2.4.0-4.fc40.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.c9H5gt
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/ProDy-2.4.0-SPECPARTS
+ rm -rf ProDy-2.4.0 ProDy-2.4.0.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
RPM build warnings:
    absolute symlink: /usr/bin/evol-3.12 -> /usr/bin/python3.12-evol
    absolute symlink: /usr/bin/prody-3.12 -> /usr/bin/python3.12-prody
Child return code was: 0