%global packname biomaRt %global __suggests_exclude ^R\\((annotate)\\) Name: R-%{packname} Version: 2.52.0 Release: 8%{?dist} Summary: R Interface to BioMart databases License: Artistic-2.0 URL: http://www.bioconductor.org/packages/release/bioc/html/biomaRt.html Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz Requires: texlive-latex BuildRequires: R-devel >= 3.0.0, R-AnnotationDbi, R-progress, R-stringr, R-httr, R-digest, R-BiocFileCache, R-rappdirs, R-XML >= 3.99-0.7, R-utils, R-xml2, R-methods BuildArch: noarch %description In recent years a wealth of biological data has become available in public data repositories. Easy access to these valuable data resources and firm integration with data analysis is needed for comprehensive bioinformatics data analysis. biomaRt provides an interface to a growing collection of databases implementing the BioMart software suite (http://www.biomart.org). The package enables retrieval of large amounts of data in a uniform way without the need to know the underlying database schemas or write complex SQL queries. Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt users direct access to a diverse set of data and enable a wide range of powerful online queries from gene annotation to database mining. %prep %setup -c -q -n %{packname} %build %install mkdir -p %{buildroot}%{_datadir}/R/library %{_bindir}/R CMD INSTALL %{packname} -l %{buildroot}%{_datadir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_datadir}/R/library/R.css %check # Enable if R-annotate ever arrives in Fedora. # %%{_bindir}/R CMD check %%{packname} %files %dir %{_datadir}/R/library/%{packname}/ %doc %{_datadir}/R/library/%{packname}/doc/ %doc %{_datadir}/R/library/%{packname}/html/ %doc %{_datadir}/R/library/%{packname}/CITATION %doc %{_datadir}/R/library/%{packname}/DESCRIPTION %doc %{_datadir}/R/library/%{packname}/NEWS %{_datadir}/R/library/%{packname}/NAMESPACE %{_datadir}/R/library/%{packname}/INDEX %{_datadir}/R/library/%{packname}/Meta/ %{_datadir}/R/library/%{packname}/R/ %{_datadir}/R/library/%{packname}/help/ %{_datadir}/R/library/%{packname}/scripts/ %changelog * Thu Apr 25 2024 Iñaki Úcar - 2.52.0-8 - R-maint-sig mass rebuild * Sat Apr 20 2024 Miroslav Suchý - 2.52.0-7 - convert license to SPDX * Mon Jan 22 2024 Fedora Release Engineering - 2.52.0-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jan 19 2024 Fedora Release Engineering - 2.52.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Wed Jul 19 2023 Fedora Release Engineering - 2.52.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Fri Apr 21 2023 Iñaki Úcar - 2.52.0-3 - R-maint-sig mass rebuild * Wed Jan 18 2023 Fedora Release Engineering - 2.52.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Sun Sep 04 2022 Iñaki Úcar - 2.52.0-1 - R 4.2.1, update to 2.52.0 * Wed Jul 20 2022 Fedora Release Engineering - 2.48.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jan 19 2022 Fedora Release Engineering - 2.48.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering - 2.48.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Thu Jun 17 2021 Tom Callaway - 2.48.1-1 - update to 2.48.1 - Rebuilt for R 4.1.0 * Wed Feb 3 2021 Tom Callaway - 2.46.2-1 - update to 2.46.2 * Mon Jan 25 2021 Fedora Release Engineering - 2.44.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Mon Jul 27 2020 Fedora Release Engineering - 2.44.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jun 8 2020 Tom Callaway - 2.44.0-1 - update to 2.44.0 - rebuild for R 4 * Tue Jan 28 2020 Fedora Release Engineering - 2.18.0-14 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Nov 21 2019 Elliott Sales de Andrade - 2.18.0-13 - Exclude Suggests for unavailable packages * Mon Aug 12 2019 Elliott Sales de Andrade - 2.18.0-12 - Remove explicit dependencies provided by automatic dependency generator * Wed Jul 24 2019 Fedora Release Engineering - 2.18.0-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Thu Jan 31 2019 Fedora Release Engineering - 2.18.0-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Thu Jul 12 2018 Fedora Release Engineering - 2.18.0-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Fri Mar 23 2018 Tom Callaway - 2.18.0-8 - updating brings in a pile of unpackaged deps, so just rebuild * Wed Feb 07 2018 Fedora Release Engineering - 2.18.0-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering - 2.18.0-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Fri Feb 10 2017 Fedora Release Engineering - 2.18.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Wed Feb 03 2016 Fedora Release Engineering - 2.18.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Tue Jun 16 2015 Fedora Release Engineering - 2.18.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri Jun 06 2014 Fedora Release Engineering - 2.18.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Fri Jan 24 2014 Tom Callaway - 2.18.0-1 - update to 2.18.0 * Fri Aug 02 2013 Fedora Release Engineering - 2.16.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Thu Apr 11 2013 Tom Callaway - 2.16.0-1 - update to 2.16.0 * Wed Feb 13 2013 Fedora Release Engineering - 2.10.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Wed Jul 18 2012 Fedora Release Engineering - 2.10.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Jan 12 2012 Fedora Release Engineering - 2.10.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Fri Nov 11 2011 Tom "spot" Callaway 2.10.0-1 - initial package for Fedora