Warning: Permanently added '54.147.23.180' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7354147-fedora-39-i386 --chroot fedora-39-i386 Version: 0.72 PID: 19378 Logging PID: 19379 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7354147, 'buildroot_pkgs': [], 'chroot': 'fedora-39-i386', 'enable_net': False, 'fedora_review': False, 'git_hash': '866b2a2e0edee64ab343c8e71dbef52319db1d02', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Biostrings', 'package_version': '2.64.1-8', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-39-i386/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/iucar', 'tags': [], 'task_id': '7354147-fedora-39-i386', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings /var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings', '/var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings'... Running: git checkout 866b2a2e0edee64ab343c8e71dbef52319db1d02 -- cmd: ['git', 'checkout', '866b2a2e0edee64ab343c8e71dbef52319db1d02', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings rc: 0 stdout: stderr: Note: switching to '866b2a2e0edee64ab343c8e71dbef52319db1d02'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 866b2a2 automatic import of R-Biostrings Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Biostrings_2.64.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Biostrings_2.64.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-Biostrings/Biostrings_2.64.1.tar.gz/md5/71a78d5b184e315b7d4565f783f35d6e/Biostrings_2.64.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 11.8M 100 11.8M 0 0 27.0M 0 --:--:-- --:--:-- --:--:-- 27.0M INFO: Reading stdout from command: md5sum Biostrings_2.64.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings/R-Biostrings.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714051927.453482 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings/R-Biostrings.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714051927.453482 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings/R-Biostrings.spec) Config(fedora-39-i686) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1714051927.453482/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-i686-bootstrap-1714051927.453482/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/98164f21fee5ab545da2166f64f2d857f2f9a2f123223e453df07d451c9acd05/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/98164f21fee5ab545da2166f64f2d857f2f9a2f123223e453df07d451c9acd05/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 57 MB/s | 15 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 65 MB/s | 75 MB 00:01 local 100 MB/s | 74 MB 00:00 Last metadata expiration check: 0:00:02 ago on Thu Apr 25 13:32:29 2024. Package python3-dnf-4.19.2-1.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: python3-dnf-plugins-core noarch 4.6.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 491 k dnf-data noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k python3-dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 553 k yum noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs x86_64 1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156 k python3-dateutil noarch 1:2.8.2-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus x86_64 1.3.2-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145 k python3-distro noarch 1.9.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k python3-six noarch 1.16.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd x86_64 235-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k Transaction Summary ========================================================================================================================= Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): python3-dbus-1.3.2-6.fc40.x86_64.rpm 1.8 MB/s | 145 kB 00:00 (2/11): dbus-libs-1.14.10-3.fc40.x86_64.rpm 1.6 MB/s | 156 kB 00:00 (3/11): python3-dateutil-2.8.2-13.fc40.noarch.r 3.3 MB/s | 345 kB 00:00 (4/11): python3-distro-1.9.0-3.fc40.noarch.rpm 2.0 MB/s | 45 kB 00:00 (5/11): python3-systemd-235-9.fc40.x86_64.rpm 5.7 MB/s | 100 kB 00:00 (6/11): python3-six-1.16.0-14.fc40.noarch.rpm 1.8 MB/s | 41 kB 00:00 (7/11): python3-dnf-plugins-core-4.6.0-1.fc41.n 8.4 MB/s | 302 kB 00:00 (8/11): dnf-data-4.19.2-1.fc41.noarch.rpm 1.9 MB/s | 40 kB 00:00 (9/11): dnf-4.19.2-1.fc41.noarch.rpm 16 MB/s | 491 kB 00:00 (10/11): python3-dnf-4.19.2-1.fc41.noarch.rpm 18 MB/s | 553 kB 00:00 (11/11): yum-4.19.2-1.fc41.noarch.rpm 1.9 MB/s | 37 kB 00:00 -------------------------------------------------------------------------------- Total 13 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.19.2-1.fc41.noarch 1/15 Upgrading : python3-dnf-4.19.2-1.fc41.noarch 2/15 Upgrading : dnf-4.19.2-1.fc41.noarch 3/15 Running scriptlet: dnf-4.19.2-1.fc41.noarch 3/15 Installing : python3-systemd-235-9.fc40.x86_64 4/15 Installing : python3-six-1.16.0-14.fc40.noarch 5/15 Installing : python3-dateutil-1:2.8.2-13.fc40.noarch 6/15 Installing : python3-distro-1.9.0-3.fc40.noarch 7/15 Installing : dbus-libs-1:1.14.10-3.fc40.x86_64 8/15 Installing : python3-dbus-1.3.2-6.fc40.x86_64 9/15 Installing : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 10/15 Upgrading : yum-4.19.2-1.fc41.noarch 11/15 Cleanup : yum-4.19.2-1.fc39.noarch 12/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : dnf-4.19.2-1.fc39.noarch 13/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : python3-dnf-4.19.2-1.fc39.noarch 14/15 Cleanup : dnf-data-4.19.2-1.fc39.noarch 15/15 Running scriptlet: dnf-data-4.19.2-1.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-3.fc40.x86_64 1/15 Verifying : python3-dateutil-1:2.8.2-13.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-6.fc40.x86_64 3/15 Verifying : python3-distro-1.9.0-3.fc40.noarch 4/15 Verifying : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 5/15 Verifying : python3-six-1.16.0-14.fc40.noarch 6/15 Verifying : python3-systemd-235-9.fc40.x86_64 7/15 Verifying : dnf-4.19.2-1.fc41.noarch 8/15 Verifying : dnf-4.19.2-1.fc39.noarch 9/15 Verifying : dnf-data-4.19.2-1.fc41.noarch 10/15 Verifying : dnf-data-4.19.2-1.fc39.noarch 11/15 Verifying : python3-dnf-4.19.2-1.fc41.noarch 12/15 Verifying : python3-dnf-4.19.2-1.fc39.noarch 13/15 Verifying : yum-4.19.2-1.fc41.noarch 14/15 Verifying : yum-4.19.2-1.fc39.noarch 15/15 Upgraded: dnf-4.19.2-1.fc41.noarch dnf-data-4.19.2-1.fc41.noarch python3-dnf-4.19.2-1.fc41.noarch yum-4.19.2-1.fc41.noarch Installed: dbus-libs-1:1.14.10-3.fc40.x86_64 python3-dateutil-1:2.8.2-13.fc40.noarch python3-dbus-1.3.2-6.fc40.x86_64 python3-distro-1.9.0-3.fc40.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch python3-six-1.16.0-14.fc40.noarch python3-systemd-235-9.fc40.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-1714051927.453482/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 70 kB/s | 1.5 kB 00:00 Copr repository 121 MB/s | 15 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 56 kB/s | 3.8 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 82 MB/s | 60 MB 00:00 local 122 kB/s | 3.8 kB 00:00 Last metadata expiration check: 0:00:01 ago on Thu Apr 25 13:32:55 2024. Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash i686 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 i686 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils i686 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M cpio i686 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290 k diffutils i686 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 403 k fedora-release noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k findutils i686 1:4.9.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 494 k gawk i686 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 M glibc-minimal-langpack i686 2.39.9000-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 109 k grep i686 3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 296 k gzip i686 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163 k info i686 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186 k patch i686 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 142 k redhat-rpm-config noarch 288-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k rpm-build i686 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71 k sed i686 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 311 k shadow-utils i686 2:4.15.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M tar i686 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 869 k unzip i686 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180 k util-linux i686 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M which i686 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k xz i686 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 536 k Installing dependencies: alternatives i686 1.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs i686 4.0.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129 k authselect i686 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 142 k authselect-libs i686 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 207 k basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils i686 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.9 M binutils-gold i686 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 853 k bzip2-libs i686 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 862 k coreutils-common i686 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib i686 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82 k crypto-policies noarch 20240320-1.git58e3d95.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65 k curl i686 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 312 k cyrus-sasl-lib i686 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 857 k debugedit i686 5.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79 k dwz i686 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k ed i686 1.20.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81 k efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 562 k elfutils-debuginfod-client i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k elfutils-default-yama-scope noarch 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 215 k elfutils-libs i686 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 292 k fedora-gpg-keys 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fpc-srpm-macros noarch 1.3-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 k gdb-minimal i686 14.2-5.fc41 copr_base 4.7 M gdbm i686 1:1.23-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 150 k gdbm-libs i686 1:1.23-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60 k ghc-srpm-macros noarch 1.9.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.0 k glibc i686 2.39.9000-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 M glibc-common i686 2.39.9000-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 400 k glibc-gconv-extra i686 2.39.9000-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 M gmp i686 1:6.3.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 311 k gnat-srpm-macros noarch 6-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.8 k go-srpm-macros noarch 3.6.0-1.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 86 k libssh i686 0.10.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 227 k libssh-config noarch 0.10.6-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.1 k libstdc++ i686 14.0.1-0.15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 946 k libtasn1 i686 4.19.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k libtirpc i686 1.3.4-1.rc3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k libtool-ltdl i686 2.4.7-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k libunistring i686 1.1-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 553 k libutempter i686 1.2.1-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27 k libuuid i686 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 30 k libverto i686 0.3.2-8.fc40 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util-linux-core i686 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 534 k xxhash-libs i686 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 47 k xz-libs i686 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120 k zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 k zip i686 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 267 k zlib-ng-compat i686 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81 k zstd i686 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 453 k Installing Groups: build Transaction Summary ======================================================================================================================================== Install 153 Packages Total size: 53 M Installed size: 175 M Downloading Packages: [SKIPPED] gdb-minimal-14.2-5.fc41.i686.rpm: Already downloaded [SKIPPED] alternatives-1.26-3.fc40.i686.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-15.fc41.noarch.rpm: Already downloaded [SKIPPED] audit-libs-4.0.1-1.fc41.i686.rpm: Already downloaded [SKIPPED] authselect-1.5.0-5.fc41.i686.rpm: Already downloaded [SKIPPED] authselect-libs-1.5.0-5.fc41.i686.rpm: Already downloaded [SKIPPED] basesystem-11-20.fc40.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.26-3.fc40.i686.rpm: Already downloaded [SKIPPED] binutils-2.42.50-6.fc41.i686.rpm: Already downloaded [SKIPPED] binutils-gold-2.42.50-6.fc41.i686.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-18.fc40.i686.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-18.fc40.i686.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.5-1.fc41.i686.rpm: Already downloaded [SKIPPED] coreutils-common-9.5-1.fc41.i686.rpm: Already downloaded [SKIPPED] cpio-2.15-1.fc40.i686.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-5.fc40.i686.rpm: Already downloaded [SKIPPED] crypto-policies-20240320-1.git58e3d95.fc41.noarch.rpm: Already downloaded [SKIPPED] curl-8.7.1-1.fc41.i686.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-19.fc40.i686.rpm: Already downloaded [SKIPPED] debugedit-5.0-14.fc40.i686.rpm: Already downloaded [SKIPPED] diffutils-3.10-5.fc40.i686.rpm: Already downloaded [SKIPPED] dwz-0.15-6.fc40.i686.rpm: Already downloaded [SKIPPED] ed-1.20.2-1.fc41.i686.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-11.fc40.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.191-7.fc41.i686.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.191-7.fc41.i686.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.191-7.fc41.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.191-7.fc41.i686.rpm: Already downloaded [SKIPPED] elfutils-libs-0.191-7.fc41.i686.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-41-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-release-41-0.9.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-41-0.9.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-41-0.9.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-41-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-41-0.1.noarch.rpm: Already downloaded [SKIPPED] file-5.45-5.fc41.i686.rpm: Already downloaded [SKIPPED] file-libs-5.45-5.fc41.i686.rpm: Already downloaded [SKIPPED] filesystem-3.18-9.fc41.i686.rpm: Already downloaded [SKIPPED] findutils-4.9.0-8.fc40.i686.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-14.fc40.noarch.rpm: Already downloaded [SKIPPED] forge-srpm-macros-0.3.1-1.fc41.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-12.fc40.noarch.rpm: Already downloaded [SKIPPED] gawk-5.3.0-3.fc40.i686.rpm: Already downloaded [SKIPPED] gdbm-1.23-6.fc40.i686.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-6.fc40.i686.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.9.1-1.fc41.noarch.rpm: Already downloaded [SKIPPED] glibc-2.39.9000-14.fc41.i686.rpm: Already downloaded [SKIPPED] glibc-common-2.39.9000-14.fc41.i686.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.39.9000-14.fc41.i686.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.39.9000-14.fc41.i686.rpm: Already downloaded [SKIPPED] gmp-6.3.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-6-5.fc40.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.6.0-1.fc41.noarch.rpm: Already downloaded [SKIPPED] grep-3.11-7.fc40.i686.rpm: Already downloaded [SKIPPED] gzip-1.13-1.fc40.i686.rpm: Already downloaded [SKIPPED] info-7.1-2.fc40.i686.rpm: Already downloaded [SKIPPED] jansson-2.13.1-9.fc40.i686.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-23.fc41.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.3-3.fc40.i686.rpm: Already downloaded [SKIPPED] krb5-libs-1.21.2-5.fc40.i686.rpm: Already downloaded [SKIPPED] libacl-2.3.2-1.fc40.i686.rpm: Already downloaded [SKIPPED] libarchive-3.7.2-3.fc41.i686.rpm: Already downloaded [SKIPPED] libattr-2.5.2-3.fc40.i686.rpm: Already downloaded [SKIPPED] libblkid-2.40-13.fc41.i686.rpm: Already downloaded [SKIPPED] libbrotli-1.1.0-3.fc40.i686.rpm: Already downloaded [SKIPPED] libcap-2.69-8.fc41.i686.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.5-1.fc41.i686.rpm: Already downloaded [SKIPPED] libcom_err-1.47.0-5.fc40.i686.rpm: Already downloaded [SKIPPED] libcurl-8.7.1-1.fc41.i686.rpm: Already downloaded [SKIPPED] libeconf-0.6.2-1.fc41.i686.rpm: Already downloaded [SKIPPED] libevent-2.1.12-12.fc40.i686.rpm: Already downloaded [SKIPPED] libfdisk-2.40-13.fc41.i686.rpm: Already downloaded [SKIPPED] libffi-3.4.6-1.fc41.i686.rpm: Already downloaded [SKIPPED] libgcc-14.0.1-0.15.fc41.i686.rpm: Already downloaded [SKIPPED] libgomp-14.0.1-0.15.fc41.i686.rpm: Already downloaded [SKIPPED] libidn2-2.3.7-1.fc40.i686.rpm: Already downloaded [SKIPPED] libmount-2.40-13.fc41.i686.rpm: Already downloaded [SKIPPED] libnghttp2-1.61.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] libnsl2-2.0.1-1.fc40.i686.rpm: Already downloaded [SKIPPED] libpkgconf-2.1.0-1.fc40.i686.rpm: Already downloaded [SKIPPED] libpsl-0.21.5-3.fc40.i686.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-9.fc40.i686.rpm: Already downloaded [SKIPPED] libselinux-3.6-4.fc40.i686.rpm: Already downloaded [SKIPPED] libsemanage-3.6-3.fc40.i686.rpm: Already downloaded [SKIPPED] libsepol-3.6-3.fc40.i686.rpm: Already downloaded [SKIPPED] libsmartcols-2.40-13.fc41.i686.rpm: Already downloaded [SKIPPED] libssh-0.10.6-6.fc41.i686.rpm: Already downloaded [SKIPPED] libssh-config-0.10.6-6.fc41.noarch.rpm: Already downloaded [SKIPPED] libstdc++-14.0.1-0.15.fc41.i686.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-6.fc40.i686.rpm: Already downloaded [SKIPPED] libtirpc-1.3.4-1.rc3.fc41.i686.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-10.fc40.i686.rpm: Already downloaded 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-9.fc41.i686 1/1 Preparing : 1/1 Installing : crypto-policies-20240320-1.git58e3d95.fc41.noarc 1/153 Running scriptlet: crypto-policies-20240320-1.git58e3d95.fc41.noarc 1/153 Installing : fedora-release-identity-basic-41-0.9.noarch 2/153 Installing : fedora-repos-rawhide-41-0.1.noarch 3/153 Installing : fedora-gpg-keys-41-0.1.noarch 4/153 Installing : fedora-repos-41-0.1.noarch 5/153 Installing : fedora-release-common-41-0.9.noarch 6/153 Installing : fedora-release-41-0.9.noarch 7/153 Installing : setup-2.14.5-2.fc40.noarch 8/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-2.fc40.noarch 8/153 Installing : filesystem-3.18-9.fc41.i686 9/153 Installing : basesystem-11-20.fc40.noarch 10/153 Installing : rust-srpm-macros-26.2-1.fc41.noarch 11/153 Installing : qt6-srpm-macros-6.7.0-1.fc41.noarch 12/153 Installing : qt5-srpm-macros-5.15.13-1.fc41.noarch 13/153 Installing : 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libtool-ltdl-2.4.7-10.fc40.i686 121/153 Installing : openldap-2.6.7-1.fc40.i686 122/153 Installing : libverto-0.3.2-8.fc40.i686 123/153 Installing : krb5-libs-1.21.2-5.fc40.i686 124/153 Installing : libtirpc-1.3.4-1.rc3.fc41.i686 125/153 Installing : libnsl2-2.0.1-1.fc40.i686 126/153 Installing : pam-1.6.1-1.fc41.i686 127/153 Installing : libssh-0.10.6-6.fc41.i686 128/153 Installing : libcurl-8.7.1-1.fc41.i686 129/153 Installing : elfutils-libs-0.191-7.fc41.i686 130/153 Installing : elfutils-debuginfod-client-0.191-7.fc41.i686 131/153 Installing : binutils-gold-2.42.50-6.fc41.i686 132/153 Running scriptlet: binutils-gold-2.42.50-6.fc41.i686 132/153 Installing : binutils-2.42.50-6.fc41.i686 133/153 Running scriptlet: binutils-2.42.50-6.fc41.i686 133/153 Installing : elfutils-0.191-7.fc41.i686 134/153 Installing : rpm-build-libs-4.19.1.1-1.fc40.i686 135/153 Installing : curl-8.7.1-1.fc41.i686 136/153 Running scriptlet: rpm-4.19.1.1-1.fc40.i686 137/153 Installing : rpm-4.19.1.1-1.fc40.i686 137/153 Installing : efi-srpm-macros-5-11.fc40.noarch 138/153 Installing : lua-srpm-macros-1-13.fc40.noarch 139/153 Installing : zig-srpm-macros-1-2.fc40.noarch 140/153 Installing : xxhash-libs-0.8.2-2.fc40.i686 141/153 Installing : gdb-minimal-14.2-5.fc41.i686 142/153 Installing : debugedit-5.0-14.fc40.i686 143/153 Installing : fonts-srpm-macros-1:2.0.5-14.fc40.noarch 144/153 Installing : forge-srpm-macros-0.3.1-1.fc41.noarch 145/153 Installing : go-srpm-macros-3.6.0-1.fc41.noarch 146/153 Installing : python-srpm-macros-3.12-9.fc41.noarch 147/153 Installing : redhat-rpm-config-288-1.fc41.noarch 148/153 Installing : rpm-build-4.19.1.1-1.fc40.i686 149/153 Installing : pyproject-srpm-macros-1.12.0-1.fc40.noarch 150/153 Installing : util-linux-2.40-13.fc41.i686 151/153 Running scriptlet: util-linux-2.40-13.fc41.i686 151/153 Installing : which-2.21-41.fc40.i686 152/153 Installing : info-7.1-2.fc40.i686 153/153 Running scriptlet: filesystem-3.18-9.fc41.i686 153/153 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.5.0-5.fc41.i686 153/153 Running scriptlet: rpm-4.19.1.1-1.fc40.i686 153/153 Running scriptlet: info-7.1-2.fc40.i686 153/153 Installed: alternatives-1.26-3.fc40.i686 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.i686 authselect-1.5.0-5.fc41.i686 authselect-libs-1.5.0-5.fc41.i686 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.i686 binutils-2.42.50-6.fc41.i686 binutils-gold-2.42.50-6.fc41.i686 bzip2-1.0.8-18.fc40.i686 bzip2-libs-1.0.8-18.fc40.i686 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.i686 coreutils-common-9.5-1.fc41.i686 cpio-2.15-1.fc40.i686 cracklib-2.9.11-5.fc40.i686 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.i686 cyrus-sasl-lib-2.1.28-19.fc40.i686 debugedit-5.0-14.fc40.i686 diffutils-3.10-5.fc40.i686 dwz-0.15-6.fc40.i686 ed-1.20.2-1.fc41.i686 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.i686 elfutils-debuginfod-client-0.191-7.fc41.i686 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.i686 elfutils-libs-0.191-7.fc41.i686 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.i686 file-libs-5.45-5.fc41.i686 filesystem-3.18-9.fc41.i686 findutils-1:4.9.0-8.fc40.i686 fonts-srpm-macros-1:2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.i686 gdb-minimal-14.2-5.fc41.i686 gdbm-1:1.23-6.fc40.i686 gdbm-libs-1:1.23-6.fc40.i686 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-14.fc41.i686 glibc-common-2.39.9000-14.fc41.i686 glibc-gconv-extra-2.39.9000-14.fc41.i686 glibc-minimal-langpack-2.39.9000-14.fc41.i686 gmp-1:6.3.0-1.fc41.i686 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.i686 gzip-1.13-1.fc40.i686 info-7.1-2.fc40.i686 jansson-2.13.1-9.fc40.i686 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.i686 krb5-libs-1.21.2-5.fc40.i686 libacl-2.3.2-1.fc40.i686 libarchive-3.7.2-3.fc41.i686 libattr-2.5.2-3.fc40.i686 libblkid-2.40-13.fc41.i686 libbrotli-1.1.0-3.fc40.i686 libcap-2.69-8.fc41.i686 libcap-ng-0.8.5-1.fc41.i686 libcom_err-1.47.0-5.fc40.i686 libcurl-8.7.1-1.fc41.i686 libeconf-0.6.2-1.fc41.i686 libevent-2.1.12-12.fc40.i686 libfdisk-2.40-13.fc41.i686 libffi-3.4.6-1.fc41.i686 libgcc-14.0.1-0.15.fc41.i686 libgomp-14.0.1-0.15.fc41.i686 libidn2-2.3.7-1.fc40.i686 libmount-2.40-13.fc41.i686 libnghttp2-1.61.0-1.fc41.i686 libnsl2-2.0.1-1.fc40.i686 libpkgconf-2.1.0-1.fc40.i686 libpsl-0.21.5-3.fc40.i686 libpwquality-1.4.5-9.fc40.i686 libselinux-3.6-4.fc40.i686 libsemanage-3.6-3.fc40.i686 libsepol-3.6-3.fc40.i686 libsmartcols-2.40-13.fc41.i686 libssh-0.10.6-6.fc41.i686 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.i686 libtasn1-4.19.0-6.fc40.i686 libtirpc-1.3.4-1.rc3.fc41.i686 libtool-ltdl-2.4.7-10.fc40.i686 libunistring-1.1-7.fc41.i686 libutempter-1.2.1-13.fc40.i686 libuuid-2.40-13.fc41.i686 libverto-0.3.2-8.fc40.i686 libxcrypt-4.4.36-5.fc40.i686 libxml2-2.12.6-1.fc41.i686 libzstd-1.5.6-1.fc41.i686 lua-libs-5.4.6-5.fc40.i686 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.i686 mpfr-4.2.1-3.fc40.i686 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.i686 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.i686 openssl-libs-1:3.2.1-6.fc41.i686 p11-kit-0.25.3-4.fc40.i686 p11-kit-trust-0.25.3-4.fc40.i686 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.i686 pam-libs-1.6.1-1.fc41.i686 patch-2.7.6-24.fc40.i686 pcre2-10.43-1.fc41.i686 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.i686 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.i686 popt-1.19-6.fc40.i686 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.i686 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.i686 rpm-build-4.19.1.1-1.fc40.i686 rpm-build-libs-4.19.1.1-1.fc40.i686 rpm-libs-4.19.1.1-1.fc40.i686 rpm-sequoia-1.6.0-2.fc40.i686 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.i686 setup-2.14.5-2.fc40.noarch shadow-utils-2:4.15.1-2.fc41.i686 sqlite-libs-3.45.2-1.fc41.i686 systemd-libs-255.5-1.fc41.i686 tar-2:1.35-3.fc40.i686 unzip-6.0-63.fc40.i686 util-linux-2.40-13.fc41.i686 util-linux-core-2.40-13.fc41.i686 which-2.21-41.fc40.i686 xxhash-libs-0.8.2-2.fc40.i686 xz-1:5.4.6-3.fc41.i686 xz-libs-1:5.4.6-3.fc41.i686 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.i686 zlib-ng-compat-2.1.6-2.fc40.i686 zstd-1.5.6-1.fc41.i686 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.i686 ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.i686 authselect-1.5.0-5.fc41.i686 authselect-libs-1.5.0-5.fc41.i686 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.i686 binutils-2.42.50-6.fc41.i686 binutils-gold-2.42.50-6.fc41.i686 bzip2-1.0.8-18.fc40.i686 bzip2-libs-1.0.8-18.fc40.i686 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.i686 coreutils-common-9.5-1.fc41.i686 cpio-2.15-1.fc40.i686 cracklib-2.9.11-5.fc40.i686 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.i686 cyrus-sasl-lib-2.1.28-19.fc40.i686 debugedit-5.0-14.fc40.i686 diffutils-3.10-5.fc40.i686 dwz-0.15-6.fc40.i686 ed-1.20.2-1.fc41.i686 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.i686 elfutils-debuginfod-client-0.191-7.fc41.i686 elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.i686 elfutils-libs-0.191-7.fc41.i686 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.i686 file-libs-5.45-5.fc41.i686 filesystem-3.18-9.fc41.i686 findutils-4.9.0-8.fc40.i686 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.i686 gdb-minimal-14.2-5.fc41.i686 gdbm-1.23-6.fc40.i686 gdbm-libs-1.23-6.fc40.i686 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-14.fc41.i686 glibc-common-2.39.9000-14.fc41.i686 glibc-gconv-extra-2.39.9000-14.fc41.i686 glibc-minimal-langpack-2.39.9000-14.fc41.i686 gmp-6.3.0-1.fc41.i686 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.i686 gzip-1.13-1.fc40.i686 info-7.1-2.fc40.i686 jansson-2.13.1-9.fc40.i686 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.i686 krb5-libs-1.21.2-5.fc40.i686 libacl-2.3.2-1.fc40.i686 libarchive-3.7.2-3.fc41.i686 libattr-2.5.2-3.fc40.i686 libblkid-2.40-13.fc41.i686 libbrotli-1.1.0-3.fc40.i686 libcap-2.69-8.fc41.i686 libcap-ng-0.8.5-1.fc41.i686 libcom_err-1.47.0-5.fc40.i686 libcurl-8.7.1-1.fc41.i686 libeconf-0.6.2-1.fc41.i686 libevent-2.1.12-12.fc40.i686 libfdisk-2.40-13.fc41.i686 libffi-3.4.6-1.fc41.i686 libgcc-14.0.1-0.15.fc41.i686 libgomp-14.0.1-0.15.fc41.i686 libidn2-2.3.7-1.fc40.i686 libmount-2.40-13.fc41.i686 libnghttp2-1.61.0-1.fc41.i686 libnsl2-2.0.1-1.fc40.i686 libpkgconf-2.1.0-1.fc40.i686 libpsl-0.21.5-3.fc40.i686 libpwquality-1.4.5-9.fc40.i686 libselinux-3.6-4.fc40.i686 libsemanage-3.6-3.fc40.i686 libsepol-3.6-3.fc40.i686 libsmartcols-2.40-13.fc41.i686 libssh-0.10.6-6.fc41.i686 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.i686 libtasn1-4.19.0-6.fc40.i686 libtirpc-1.3.4-1.rc3.fc41.i686 libtool-ltdl-2.4.7-10.fc40.i686 libunistring-1.1-7.fc41.i686 libutempter-1.2.1-13.fc40.i686 libuuid-2.40-13.fc41.i686 libverto-0.3.2-8.fc40.i686 libxcrypt-4.4.36-5.fc40.i686 libxml2-2.12.6-1.fc41.i686 libzstd-1.5.6-1.fc41.i686 lua-libs-5.4.6-5.fc40.i686 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.i686 mpfr-4.2.1-3.fc40.i686 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.i686 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.i686 openssl-libs-3.2.1-6.fc41.i686 p11-kit-0.25.3-4.fc40.i686 p11-kit-trust-0.25.3-4.fc40.i686 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.i686 pam-libs-1.6.1-1.fc41.i686 patch-2.7.6-24.fc40.i686 pcre2-10.43-1.fc41.i686 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.i686 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.i686 popt-1.19-6.fc40.i686 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.i686 redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.i686 rpm-build-4.19.1.1-1.fc40.i686 rpm-build-libs-4.19.1.1-1.fc40.i686 rpm-libs-4.19.1.1-1.fc40.i686 rpm-sequoia-1.6.0-2.fc40.i686 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.i686 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.i686 sqlite-libs-3.45.2-1.fc41.i686 systemd-libs-255.5-1.fc41.i686 tar-1.35-3.fc40.i686 unzip-6.0-63.fc40.i686 util-linux-2.40-13.fc41.i686 util-linux-core-2.40-13.fc41.i686 which-2.21-41.fc40.i686 xxhash-libs-0.8.2-2.fc40.i686 xz-5.4.6-3.fc41.i686 xz-libs-5.4.6-3.fc41.i686 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.i686 zlib-ng-compat-2.1.6-2.fc40.i686 zstd-1.5.6-1.fc41.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1714003200 Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-8.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-i686-1714051927.453482/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-i686-1714051927.453482/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-i686-1714051927.453482/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-i686-1714051927.453482/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6lf0bpuc/R-Biostrings/R-Biostrings.spec) Config(child) 1 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-8.fc41.src.rpm) Config(fedora-39-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1714051927.453482/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-i686-bootstrap-1714051927.453482/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-i686-1714051927.453482/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Finish: chroot init Start: build phase for R-Biostrings-2.64.1-8.fc41.src.rpm Start: build setup for R-Biostrings-2.64.1-8.fc41.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1714003200 Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-8.fc41.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 57 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 29 kB/s | 3.8 kB 00:00 local 113 kB/s | 3.8 kB 00:00 Dependencies resolved. ===================================================================================================================================================== Package Arch Version Repository Size ===================================================================================================================================================== Installing: R-BiocGenerics noarch 0.42.0-7.fc41 copr_base 641 k R-GenomeInfoDb noarch 1.32.3-7.fc41 copr_base 3.8 M R-IRanges-devel i686 2.30.1-6.fc40 copr_base 10 k R-S4Vectors-devel i686 0.34.0-7.fc41 copr_base 14 k R-XVector-devel i686 0.36.0-7.fc41 copr_base 11 k R-core i686 4.4.0-1.fc41~bootstrap copr_base 63 M R-crayon noarch 1.5.1-6.fc40 copr_base 180 k R-devel i686 4.4.0-1.fc41~bootstrap copr_base 11 k texlive-collection-latexrecommended noarch 11:svn65512-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k Installing dependencies: R-GenomeInfoDbData noarch 1.2.8-7.fc41 copr_base 11 M R-IRanges i686 2.30.1-6.fc40 copr_base 2.3 M R-RCurl i686 1.98.1.8-6.fc40 copr_base 864 k R-S4Vectors i686 0.34.0-7.fc41 copr_base 2.1 M R-XVector i686 0.36.0-7.fc41 copr_base 649 k R-bitops i686 1.0.7-11.fc40 copr_base 42 k R-core-devel i686 4.4.0-1.fc41~bootstrap copr_base 88 k R-rpm-macros noarch 1.2.1-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k abattis-cantarell-vf-fonts noarch 0.301-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120 k adobe-mappings-cmap noarch 20230622-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M adobe-mappings-cmap-deprecated noarch 20230622-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114 k adobe-mappings-pdf noarch 20190401-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 687 k annobin-docs noarch 12.51-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 89 k annobin-plugin-gcc i686 12.51-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 962 k avahi-libs i686 0.8-26.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 73 k biber noarch 2.19-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 280 k brotli i686 1.1.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20 k brotli-devel i686 1.1.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 34 k bzip2-devel i686 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214 k cairo i686 1.18.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 757 k cairo-devel i686 1.18.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 176 k cmake-filesystem i686 3.28.3-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k cpp i686 14.0.1-0.15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 M cups-libs i686 1:2.4.7-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282 k dbus-libs i686 1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 167 k default-fonts-core-sans noarch 4.0-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25 k desktop-file-utils i686 0.26-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 70 k emacs-filesystem noarch 1:30.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.1 k expat i686 2.6.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118 k flexiblas i686 3.4.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25 k flexiblas-devel i686 3.4.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106 k flexiblas-netlib i686 3.4.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 M flexiblas-openblas-openmp i686 3.4.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 18 k 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k xz-devel i686 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62 k zlib-ng-compat-devel i686 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k zziplib i686 0.13.72-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88 k Transaction Summary ===================================================================================================================================================== Install 671 Packages Total size: 470 M Total download size: 21 M Installed size: 1.1 G Downloading Packages: [SKIPPED] R-BiocGenerics-0.42.0-7.fc41.noarch.rpm: Already downloaded [SKIPPED] R-core-4.4.0-1.fc41~bootstrap.i686.rpm: Already downloaded [SKIPPED] R-core-devel-4.4.0-1.fc41~bootstrap.i686.rpm: Already downloaded [SKIPPED] R-devel-4.4.0-1.fc41~bootstrap.i686.rpm: Already downloaded [SKIPPED] graphite2-1.3.14-15.fc40.i686.rpm: Already downloaded [SKIPPED] graphite2-devel-1.3.14-15.fc40.i686.rpm: Already downloaded [SKIPPED] libRmath-4.4.0-1.fc41~bootstrap.i686.rpm: Already downloaded [SKIPPED] libRmath-devel-4.4.0-1.fc41~bootstrap.i686.rpm: Already downloaded [SKIPPED] R-rpm-macros-1.2.1-9.fc40.noarch.rpm: Already downloaded [SKIPPED] abattis-cantarell-vf-fonts-0.301-12.fc40.noarch.rpm: Already downloaded [SKIPPED] adobe-mappings-cmap-20230622-3.fc40.noarch.rpm: Already downloaded [SKIPPED] adobe-mappings-cmap-deprecated-20230622-3.fc40.noarch.rpm: Already downloaded [SKIPPED] adobe-mappings-pdf-20190401-7.fc40.noarch.rpm: Already downloaded [SKIPPED] annobin-docs-12.51-1.fc41.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.51-1.fc41.i686.rpm: Already downloaded [SKIPPED] avahi-libs-0.8-26.fc40.i686.rpm: Already downloaded [SKIPPED] biber-2.19-5.fc40.noarch.rpm: Already downloaded [SKIPPED] brotli-1.1.0-3.fc40.i686.rpm: Already downloaded [SKIPPED] brotli-devel-1.1.0-3.fc40.i686.rpm: Already downloaded [SKIPPED] bzip2-devel-1.0.8-18.fc40.i686.rpm: Already downloaded [SKIPPED] cairo-1.18.0-3.fc40.i686.rpm: Already downloaded [SKIPPED] cairo-devel-1.18.0-3.fc40.i686.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.28.3-4.fc41.i686.rpm: Already downloaded [SKIPPED] cpp-14.0.1-0.15.fc41.i686.rpm: Already downloaded [SKIPPED] cups-libs-2.4.7-13.fc41.i686.rpm: Already downloaded [SKIPPED] dbus-libs-1.14.10-3.fc40.i686.rpm: Already downloaded [SKIPPED] default-fonts-core-sans-4.0-12.fc40.noarch.rpm: Already downloaded [SKIPPED] desktop-file-utils-0.26-12.fc40.i686.rpm: Already downloaded [SKIPPED] emacs-filesystem-30.0-2.fc41.noarch.rpm: Already downloaded [SKIPPED] expat-2.6.2-1.fc41.i686.rpm: Already downloaded [SKIPPED] flexiblas-3.4.2-1.fc41.i686.rpm: Already downloaded [SKIPPED] flexiblas-devel-3.4.2-1.fc41.i686.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.4.2-1.fc41.i686.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp-3.4.2-1.fc41.i686.rpm: Already downloaded [SKIPPED] fontconfig-2.15.0-4.fc40.i686.rpm: Already downloaded [SKIPPED] fontconfig-devel-2.15.0-4.fc40.i686.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-14.fc40.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.2-5.fc40.i686.rpm: Already downloaded [SKIPPED] freetype-devel-2.13.2-5.fc40.i686.rpm: Already downloaded [SKIPPED] fribidi-1.0.13-4.fc40.i686.rpm: Already downloaded [SKIPPED] gc-8.2.2-6.fc40.i686.rpm: Already downloaded [SKIPPED] gcc-14.0.1-0.15.fc41.i686.rpm: Already downloaded [SKIPPED] gcc-c++-14.0.1-0.15.fc41.i686.rpm: Already downloaded [SKIPPED] gcc-gfortran-14.0.1-0.15.fc41.i686.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-14.0.1-0.15.fc41.i686.rpm: Already downloaded [SKIPPED] gettext-0.22.5-2.fc41.i686.rpm: Already downloaded [SKIPPED] gettext-envsubst-0.22.5-2.fc41.i686.rpm: Already downloaded [SKIPPED] gettext-libs-0.22.5-2.fc41.i686.rpm: Already downloaded [SKIPPED] gettext-runtime-0.22.5-2.fc41.i686.rpm: Already downloaded [SKIPPED] ghostscript-10.03.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] ghostscript-tools-fonts-10.03.0-1.fc41.noarch.rpm: Already downloaded [SKIPPED] ghostscript-tools-printing-10.03.0-1.fc41.noarch.rpm: Already downloaded [SKIPPED] glib2-2.80.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] glib2-devel-2.80.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] glibc-devel-2.39.9000-14.fc41.i686.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.39.9000-14.fc41.noarch.rpm: Already downloaded [SKIPPED] gnutls-3.8.5-1.fc41.i686.rpm: Already downloaded [SKIPPED] google-droid-sans-fonts-20200215-19.fc40.noarch.rpm: Already downloaded [SKIPPED] google-noto-fonts-common-20240401-1.fc41.noarch.rpm: Already downloaded [SKIPPED] google-noto-sans-vf-fonts-20240401-1.fc41.noarch.rpm: Already downloaded [SKIPPED] groff-base-1.23.0-6.fc40.i686.rpm: Already downloaded [SKIPPED] guile30-3.0.7-12.fc40.i686.rpm: Already downloaded [SKIPPED] harfbuzz-8.4.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] harfbuzz-devel-8.4.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] harfbuzz-icu-8.4.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] jbig2dec-libs-0.20-4.fc40.i686.rpm: Already downloaded [SKIPPED] jbigkit-libs-2.1-29.fc40.i686.rpm: Already downloaded [SKIPPED] kernel-headers-6.9.0-0.rc5.44.fc41.i686.rpm: Already downloaded [SKIPPED] lcms2-2.16-3.fc40.i686.rpm: Already downloaded [SKIPPED] libICE-1.1.1-3.fc40.i686.rpm: Already downloaded [SKIPPED] libSM-1.2.4-3.fc40.i686.rpm: Already downloaded [SKIPPED] libX11-1.8.9-1.fc41.i686.rpm: Already downloaded [SKIPPED] libX11-common-1.8.9-1.fc41.noarch.rpm: Already downloaded [SKIPPED] libX11-devel-1.8.9-1.fc41.i686.rpm: Already downloaded [SKIPPED] libX11-xcb-1.8.9-1.fc41.i686.rpm: Already downloaded [SKIPPED] libXau-1.0.11-6.fc40.i686.rpm: Already downloaded [SKIPPED] libXau-devel-1.0.11-6.fc40.i686.rpm: Already downloaded [SKIPPED] libXaw-1.0.16-1.fc41.i686.rpm: Already downloaded [SKIPPED] libXext-1.3.6-1.fc40.i686.rpm: Already downloaded [SKIPPED] libXext-devel-1.3.6-1.fc40.i686.rpm: Already downloaded 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libtextstyle-0.22.5-2.fc41.i686.rpm: Already downloaded [SKIPPED] libthai-0.1.29-8.fc40.i686.rpm: Already downloaded [SKIPPED] libtiff-4.6.0-2.fc40.i686.rpm: Already downloaded [SKIPPED] libtirpc-devel-1.3.4-1.rc3.fc41.i686.rpm: Already downloaded [SKIPPED] libubsan-14.0.1-0.15.fc41.i686.rpm: Already downloaded [SKIPPED] libwebp-1.4.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] libxcb-1.17.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] libxcb-devel-1.17.0-1.fc41.i686.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.36-5.fc40.i686.rpm: Already downloaded [SKIPPED] libxml2-devel-2.12.6-1.fc41.i686.rpm: Already downloaded [SKIPPED] libxslt-1.1.39-3.fc40.i686.rpm: Already downloaded [SKIPPED] mailcap-2.1.54-5.fc40.noarch.rpm: Already downloaded [SKIPPED] make-4.4.1-6.fc40.i686.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-9.fc40.i686.rpm: Already downloaded [SKIPPED] ncurses-6.4-12.20240127.fc40.i686.rpm: Already downloaded [SKIPPED] nettle-3.9.1-6.fc40.i686.rpm: Already 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perl-Business-ISSN-1.005-10.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Carp-1.54-502.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Accessor-0.51-20.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Data-Inheritable-0.09-8.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Inspector-1.36-16.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Method-Modifiers-2.15-4.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Singleton-1.6-11.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.68-507.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-Clone-0.46-6.fc40.i686.rpm: Already downloaded [SKIPPED] perl-Compress-Raw-Bzip2-2.211-1.fc41.i686.rpm: Already downloaded [SKIPPED] perl-Compress-Raw-Zlib-2.211-1.fc41.i686.rpm: Already downloaded [SKIPPED] perl-Convert-ASN1-0.34-3.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Compare-1.29-4.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Dump-1.25-10.fc40.noarch.rpm: Already 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perl-Encode-3.21-505.fc41.i686.rpm: Already downloaded [SKIPPED] perl-Encode-Locale-1.05-29.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-English-1.11-507.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-Errno-1.37-507.fc41.i686.rpm: Already downloaded [SKIPPED] perl-Eval-Closure-0.14-23.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Exception-Class-1.45-10.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Exporter-5.78-3.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-ExtUtils-MM-Utils-7.70-503.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.15-507.fc41.i686.rpm: Already downloaded [SKIPPED] perl-File-Basename-2.86-507.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-File-Compare-1.100.700-507.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-File-Copy-2.41-507.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-File-Find-1.43-507.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-File-Find-Rule-0.34-28.fc40.noarch.rpm: Already downloaded [SKIPPED] 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perl-HTTP-Date-6.06-4.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Message-6.45-3.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Negotiate-6.01-38.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Tiny-0.088-5.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Hash-Util-FieldHash-1.26-507.fc41.i686.rpm: Already downloaded [SKIPPED] perl-I18N-LangTags-0.45-507.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-I18N-Langinfo-0.22-507.fc41.i686.rpm: Already downloaded [SKIPPED] perl-IO-1.52-507.fc41.i686.rpm: Already downloaded [SKIPPED] perl-IO-Compress-2.211-1.fc41.noarch.rpm: Already downloaded [SKIPPED] perl-IO-HTML-1.004-12.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-IO-Socket-IP-0.42-2.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-IO-Socket-SSL-2.085-1.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-IO-String-1.08-50.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-IPC-Cmd-1.04-504.fc40.noarch.rpm: Already downloaded [SKIPPED] 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perl-Log-Dispatch-FileRotate-1.38-9.fc40.noarch perl-Log-Log4perl-1.57-5.fc40.noarch perl-MIME-Base64-3.16-503.fc40.i686 perl-MIME-Charset-1.013.1-5.fc40.noarch perl-MIME-Lite-3.033-10.fc40.noarch perl-MIME-Types-2.26-1.fc40.noarch perl-MRO-Compat-0.15-9.fc40.noarch perl-Mail-Sender-1:0.903-24.fc40.noarch perl-Mail-Sendmail-0.80-20.fc40.noarch perl-MailTools-2.21-16.fc40.noarch perl-Math-BigInt-1:2.0030.02-3.fc40.noarch perl-Math-Complex-1.62-507.fc41.noarch perl-Module-CoreList-1:5.20240320-1.fc41.noarch perl-Module-Implementation-0.09-39.fc40.noarch perl-Module-Load-1:0.36-503.fc40.noarch perl-Module-Load-Conditional-0.74-503.fc40.noarch perl-Module-Metadata-1.000038-5.fc40.noarch perl-Module-Runtime-0.016-22.fc40.noarch perl-Mozilla-CA-20240313-1.fc41.noarch perl-NTLM-1.09-38.fc40.noarch perl-Net-HTTP-6.23-4.fc40.noarch perl-Net-SMTP-SSL-1.04-24.fc40.noarch perl-Net-SSLeay-1.94-3.fc40.i686 perl-Number-Compare-0.03-38.fc40.noarch perl-Opcode-1.64-507.fc41.i686 perl-POSIX-2.13-507.fc41.i686 perl-Package-Generator-1.106-31.fc40.noarch perl-Package-Stash-0.40-7.fc40.noarch perl-Package-Stash-XS-0.30-7.fc40.i686 perl-PadWalker-2.5-13.fc40.i686 perl-Params-Check-1:0.38-502.fc40.noarch perl-Params-Classify-0.015-22.fc40.i686 perl-Params-Util-1.102-14.fc40.i686 perl-Params-Validate-1.31-7.fc40.i686 perl-Params-ValidationCompiler-0.31-5.fc40.noarch perl-Parse-RecDescent-1.967015-22.fc40.noarch perl-PathTools-3.89-502.fc40.i686 perl-Pod-Escapes-1:1.07-503.fc40.noarch perl-Pod-Html-1.34-507.fc41.noarch perl-Pod-Perldoc-3.28.01-503.fc40.noarch perl-Pod-Simple-1:3.45-6.fc40.noarch perl-Pod-Usage-4:2.03-503.fc40.noarch perl-Ref-Util-0.204-20.fc40.noarch perl-Ref-Util-XS-0.117-22.fc40.i686 perl-Regexp-Common-2017060201-24.fc40.noarch perl-Role-Tiny-2.002004-11.fc40.noarch perl-Safe-2.44-507.fc41.noarch perl-Scalar-List-Utils-5:1.63-503.fc40.i686 perl-SelectSaver-1.02-507.fc41.noarch perl-Socket-4:2.038-1.fc41.i686 perl-Sort-Key-1.33-30.fc40.i686 perl-Specio-0.48-6.fc40.noarch perl-Storable-1:3.32-502.fc40.i686 perl-Sub-Exporter-0.991-3.fc40.noarch perl-Sub-Exporter-Progressive-0.001013-24.fc40.noarch perl-Sub-Identify-0.14-26.fc40.i686 perl-Sub-Install-0.929-5.fc40.noarch perl-Symbol-1.09-507.fc41.noarch perl-Sys-Hostname-1.25-507.fc41.i686 perl-Sys-Syslog-0.36-504.fc40.i686 perl-Term-ANSIColor-5.01-504.fc40.noarch perl-Term-Cap-1.18-503.fc40.noarch perl-Text-Balanced-2.06-502.fc40.noarch perl-Text-BibTeX-0.89-5.fc40.i686 perl-Text-CSV-2.03-3.fc40.noarch perl-Text-Glob-0.11-23.fc40.noarch perl-Text-ParseWords-3.31-502.fc40.noarch perl-Text-Roman-3.5-27.fc40.noarch perl-Text-Soundex-3.05-30.fc40.i686 perl-Text-Tabs+Wrap-2024.001-1.fc41.noarch perl-Text-Unidecode-1.30-24.fc40.noarch perl-Tie-4.6-507.fc41.noarch perl-Tie-Cycle-1.228-1.fc40.noarch perl-Tie-RefHash-1.40-503.fc40.noarch perl-Time-HiRes-4:1.9775-502.fc40.i686 perl-Time-Local-2:1.350-5.fc40.noarch perl-TimeDate-1:2.33-14.fc40.noarch perl-Try-Tiny-0.31-9.fc40.noarch perl-URI-5.28-1.fc41.noarch perl-Unicode-Collate-1.31-502.fc40.i686 perl-Unicode-LineBreak-2019.001-20.fc40.i686 perl-Unicode-Normalize-1.32-502.fc40.i686 perl-Unicode-UCD-0.78-507.fc41.noarch perl-Variable-Magic-0.64-1.fc41.i686 perl-WWW-RobotRules-6.02-39.fc40.noarch perl-XML-LibXML-1:2.0210-1.fc40.i686 perl-XML-LibXML-Simple-1.01-14.fc40.noarch perl-XML-LibXSLT-2.002.001-5.fc40.i686 perl-XML-NamespaceSupport-1.12-23.fc40.noarch perl-XML-Parser-2.47-3.fc40.i686 perl-XML-SAX-1.02-16.fc40.noarch perl-XML-SAX-Base-1.09-23.fc40.noarch perl-XML-Writer-0.900-14.fc40.noarch perl-XML-XPath-1.48-6.fc40.noarch perl-XString-0.005-12.fc40.i686 perl-autodie-2.37-3.fc40.noarch perl-autovivification-0.18-22.fc40.i686 perl-base-2.27-507.fc41.noarch perl-constant-1.33-503.fc40.noarch perl-deprecate-0.04-507.fc41.noarch perl-encoding-4:3.00-505.fc41.i686 perl-if-0.61.000-507.fc41.noarch perl-interpreter-4:5.38.2-507.fc41.i686 perl-libnet-3.15-503.fc40.noarch perl-libs-4:5.38.2-507.fc41.i686 perl-libwww-perl-6.77-1.fc41.noarch perl-locale-1.10-507.fc41.noarch perl-meta-notation-5.38.2-507.fc41.noarch perl-mro-1.28-507.fc41.i686 perl-namespace-autoclean-0.29-18.fc40.noarch perl-namespace-clean-0.27-26.fc40.noarch perl-open-1.13-507.fc41.noarch perl-overload-1.37-507.fc41.noarch perl-overloading-0.02-507.fc41.noarch perl-parent-1:0.241-502.fc40.noarch perl-podlators-1:5.01-502.fc40.noarch perl-sigtrap-1.10-507.fc41.noarch perl-subs-1.04-507.fc41.noarch perl-vars-1.05-507.fc41.noarch perl-version-8:0.99.30-3.fc40.i686 perltidy-20240202-1.fc40.noarch pixman-0.43.4-1.fc41.i686 pixman-devel-0.43.4-1.fc41.i686 python-pip-wheel-24.0-2.fc41.noarch python3-3.12.3-2.fc41.i686 python3-libs-3.12.3-2.fc41.i686 python3-packaging-24.0-1.fc41.noarch sombok-2.4.0-21.fc40.i686 sysprof-capture-devel-46.0-1.fc41.i686 tcl-1:8.6.14-1.fc41.i686 tcl-devel-1:8.6.14-1.fc41.i686 teckit-2.5.12-2.fc40.i686 texlive-ae-11:svn15878.1.4-71.fc40.noarch texlive-algorithms-11:svn42428-71.fc40.noarch texlive-alphalph-11:svn53087-71.fc40.noarch texlive-amscls-11:svn55378-71.fc40.noarch texlive-amsfonts-11:svn61937-71.fc40.noarch texlive-amsmath-11:svn63514-71.fc40.noarch texlive-anysize-11:svn15878.0-71.fc40.noarch texlive-atbegshi-11:svn53051-71.fc40.noarch texlive-attachfile-11:svn42099-71.fc40.noarch texlive-attachfile2-11:svn57959-84.fc41.noarch texlive-atveryend-11:svn53108-71.fc40.noarch texlive-auto-pst-pdf-11:svn56596-71.fc40.noarch texlive-auxhook-11:svn53173-71.fc40.noarch texlive-avantgar-11:svn61983-71.fc40.noarch texlive-babel-11:svn65823-71.fc40.noarch texlive-babel-english-11:svn44495-71.fc40.noarch texlive-babelbib-11:svn57349-71.fc40.noarch texlive-base-11:20230311-84.fc41.i686 texlive-beamer-11:svn65984-71.fc40.noarch texlive-bera-11:svn20031.0-71.fc40.noarch texlive-beton-11:svn15878.0-71.fc40.noarch texlive-biblatex-11:svn66403-71.fc40.noarch texlive-bibtex-11:svn66186-84.fc41.i686 texlive-bidi-11:svn65572-71.fc40.noarch texlive-bigintcalc-11:svn53172-71.fc40.noarch texlive-bitset-11:svn53837-71.fc40.noarch texlive-bookman-11:svn61719-71.fc40.noarch texlive-bookmark-11:svn56885-71.fc40.noarch texlive-booktabs-11:svn53402-71.fc40.noarch texlive-breakurl-11:svn29901.1.40-71.fc40.noarch texlive-breqn-11:svn60881-71.fc40.noarch texlive-caption-11:svn66580-71.fc40.noarch texlive-carlisle-11:svn59577-71.fc40.noarch texlive-catchfile-11:svn53084-71.fc40.noarch texlive-changepage-11:svn15878.1.0c-71.fc40.noarch texlive-charter-11:svn15878.0-71.fc40.noarch texlive-cite-11:svn36428.5.5-71.fc40.noarch texlive-cm-11:svn57963-71.fc40.noarch texlive-cm-super-11:svn15878.0-71.fc40.noarch texlive-cmap-11:svn57640-71.fc40.noarch texlive-collection-basic-11:svn59159-71.fc40.noarch texlive-collection-latex-11:svn63515-71.fc40.noarch texlive-collection-latexrecommended-11:svn65512-71.fc40.noarch texlive-colorprofiles-11:svn49086-71.fc40.noarch texlive-colortbl-11:svn64015-71.fc40.noarch texlive-courier-11:svn61719-71.fc40.noarch texlive-crop-11:svn55424-71.fc40.noarch texlive-csquotes-11:svn64389-71.fc40.noarch texlive-ctable-11:svn38672-71.fc40.noarch texlive-ctablestack-11:svn38514-71.fc40.noarch texlive-currfile-11:svn64673-71.fc40.noarch texlive-dehyph-11:svn48599-71.fc40.noarch texlive-dvipdfmx-11:svn66203-84.fc41.i686 texlive-dvips-11:svn66203-84.fc41.i686 texlive-ec-11:svn25033.1.0-71.fc40.noarch texlive-enctex-11:svn34957.0-71.fc40.noarch texlive-enumitem-11:svn51423-71.fc40.noarch texlive-epstopdf-11:svn66461-84.fc41.noarch texlive-epstopdf-pkg-11:svn53546-71.fc40.noarch texlive-eso-pic-11:svn56658-71.fc40.noarch texlive-etex-11:svn66203-71.fc40.noarch texlive-etex-pkg-11:svn41784-71.fc40.noarch texlive-etexcmds-11:svn53171-71.fc40.noarch texlive-etoolbox-11:svn56554-71.fc40.noarch texlive-euenc-11:svn19795.0.1h-71.fc40.noarch texlive-euler-11:svn42428-71.fc40.noarch texlive-everysel-11:svn57489-71.fc40.noarch texlive-everyshi-11:svn57001-71.fc40.noarch texlive-extsizes-11:svn17263.1.4a-71.fc40.noarch texlive-fancybox-11:svn18304.1.4-71.fc40.noarch texlive-fancyhdr-11:svn64977-71.fc40.noarch texlive-fancyref-11:svn15878.0.9c-71.fc40.noarch texlive-fancyvrb-11:svn65585-71.fc40.noarch texlive-filecontents-11:svn52142-71.fc40.noarch texlive-filehook-11:svn64822-71.fc40.noarch texlive-finstrut-11:svn21719.0.5-71.fc40.noarch texlive-firstaid-11:svn64892-71.fc40.noarch texlive-fix2col-11:svn38770-71.fc40.noarch texlive-float-11:svn15878.1.3d-71.fc40.noarch texlive-fontspec-11:svn63386-71.fc40.noarch texlive-footmisc-11:svn62524-71.fc40.noarch texlive-footnotehyper-11:svn60374-71.fc40.noarch texlive-fp-11:svn49719-71.fc40.noarch texlive-fpl-11:svn54512-71.fc40.noarch texlive-geometry-11:svn61719-71.fc40.noarch texlive-gettitlestring-11:svn53170-71.fc40.noarch texlive-glyphlist-11:svn54074-84.fc41.noarch texlive-graphics-11:svn66204-71.fc40.noarch texlive-graphics-cfg-11:svn41448-71.fc40.noarch texlive-graphics-def-11:svn64487-71.fc40.noarch texlive-grfext-11:svn53024-71.fc40.noarch texlive-grffile-11:svn52756-71.fc40.noarch texlive-gsftopk-11:svn52851-84.fc41.i686 texlive-helvetic-11:svn61719-71.fc40.noarch texlive-hobsub-11:svn52810-71.fc40.noarch texlive-hologo-11:svn61719-71.fc40.noarch texlive-hopatch-11:svn65491-71.fc40.noarch texlive-hycolor-11:svn53584-71.fc40.noarch texlive-hypdoc-11:svn65678-71.fc40.noarch texlive-hyperref-11:svn65758-71.fc40.noarch texlive-hyph-utf8-11:svn61719-71.fc40.noarch texlive-hyphen-base-11:svn66413-71.fc40.noarch texlive-hyphenex-11:svn57387-71.fc40.noarch texlive-ifmtarg-11:svn47544-71.fc40.noarch texlive-ifplatform-11:svn45533-71.fc40.noarch texlive-iftex-11:svn61910-71.fc40.noarch texlive-index-11:svn24099.4.1beta-71.fc40.noarch texlive-infwarerr-11:svn53023-71.fc40.noarch texlive-intcalc-11:svn53168-71.fc40.noarch texlive-jknapltx-11:svn19440.0-71.fc40.noarch texlive-kastrup-11:svn15878.0-71.fc40.noarch texlive-knuth-lib-11:svn57963-71.fc40.noarch texlive-knuth-local-11:svn57963-71.fc40.noarch texlive-koma-script-11:svn64685-71.fc40.noarch texlive-kpathsea-11:svn66209-84.fc41.i686 texlive-kvdefinekeys-11:svn53193-71.fc40.noarch texlive-kvoptions-11:svn63622-71.fc40.noarch texlive-kvsetkeys-11:svn64632-71.fc40.noarch texlive-l3backend-11:svn65573-71.fc40.noarch texlive-l3experimental-11:svn65621-71.fc40.noarch texlive-l3kernel-11:svn66094-71.fc40.noarch texlive-l3packages-11:svn65722-71.fc40.noarch texlive-latex-11:svn65161-84.fc41.noarch texlive-latex-fonts-11:svn28888.0-71.fc40.noarch texlive-latex-lab-11:svn64892-71.fc40.noarch texlive-latexbug-11:svn63596-71.fc40.noarch texlive-latexconfig-11:svn53525-71.fc40.noarch texlive-letltxmacro-11:svn53022-71.fc40.noarch texlive-lib-11:20230311-84.fc41.i686 texlive-lineno-11:svn65586-71.fc40.noarch texlive-listings-11:svn66222-71.fc40.noarch texlive-lm-11:svn65956-71.fc40.noarch texlive-lm-math-11:svn36915.1.959-71.fc40.noarch texlive-logreq-11:svn53003-71.fc40.noarch texlive-ltabptch-11:svn17533.1.74d-71.fc40.noarch texlive-ltxcmds-11:svn56421-71.fc40.noarch texlive-ltxmisc-11:svn21927.0-71.fc40.noarch texlive-lua-alt-getopt-11:svn56414-71.fc40.noarch texlive-lua-uni-algos-11:svn62204-71.fc40.noarch texlive-luabidi-11:svn54512-71.fc40.noarch texlive-luahbtex-11:svn66186-84.fc41.i686 texlive-lualatex-math-11:svn61464-71.fc40.noarch texlive-lualibs-11:svn64615-71.fc40.noarch texlive-luaotfload-11:svn64616-84.fc41.noarch texlive-luatex-11:svn66967-84.fc41.i686 texlive-luatexbase-11:svn52663-71.fc40.noarch texlive-lwarp-11:svn66259-84.fc41.noarch texlive-makecmds-11:svn15878.0-71.fc40.noarch texlive-makeindex-11:svn62517-84.fc41.i686 texlive-marginnote-11:svn48383-71.fc40.noarch texlive-marvosym-11:svn29349.2.2a-71.fc40.noarch texlive-mathpazo-11:svn52663-71.fc40.noarch texlive-mathspec-11:svn42773-71.fc40.noarch texlive-mathtools-11:svn63767-71.fc40.noarch texlive-mdwtools-11:svn15878.1.05.4-71.fc40.noarch texlive-memoir-11:svn65040-71.fc40.noarch 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zziplib-0.13.72-6.fc40.i686 Complete! Finish: build setup for R-Biostrings-2.64.1-8.fc41.src.rpm Start: rpmbuild R-Biostrings-2.64.1-8.fc41.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1714003200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.MBipLw + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Biostrings + /usr/bin/mkdir -p Biostrings + cd Biostrings + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Biostrings_2.64.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/Biostrings-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Biostrings-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.TcIT4O + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.S34BNO + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386 ++ dirname /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386 + mkdir -p /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386/usr/lib/R/library + R CMD INSTALL Biostrings -l /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386/usr/lib/R/library * installing *source* package ‘Biostrings’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 14.0.1 20240411 (Red Hat 14.0.1-0)’ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c BAB_class.c -o BAB_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c BitMatrix.c -o BitMatrix.o BitMatrix.c:299:13: warning: ‘BitMatrix_print’ defined but not used [-Wunused-function] 299 | static void BitMatrix_print(BitMatrix *bitmat) | ^~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c MIndex_class.c -o MIndex_class.o MIndex_class.c: In function ‘SparseMIndex_endIndex’: MIndex_class.c:184:27: warning: unused variable ‘poffsets_order’ [-Wunused-variable] 184 | IntAE *poffsets, *poffsets_order; | ^~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c PreprocessedTB_class.c -o PreprocessedTB_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_Biostrings.c -o R_init_Biostrings.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c RoSeqs_utils.c -o RoSeqs_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c SparseList_utils.c -o SparseList_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c XStringSetList_class.c -o XStringSetList_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c XStringSet_class.c -o XStringSet_class.o XStringSet_class.c: In function ‘new_XStringSet_from_CHARACTER’: XStringSet_class.c:124:17: warning: ‘lkup_len’ may be used uninitialized [-Wmaybe-uninitialized] 124 | _copy_CHARSXP_to_Chars_holder(&ans_elt_holder, x_elt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | INTEGER(start)[i], lkup0, lkup_len); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ XStringSet_class.c:103:22: note: ‘lkup_len’ was declared here 103 | int ans_len, lkup_len, i; | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c XString_class.c -o XString_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c XVector_stubs.c -o XVector_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c align_needwunsQS.c -o align_needwunsQS.o align_needwunsQS.c: In function ‘align_needwunsQS’: align_needwunsQS.c:155:29: warning: ‘sc’ may be used uninitialized [-Wmaybe-uninitialized] 155 | INTEGER(ans_elt)[0] = score; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ align_needwunsQS.c:27:19: note: ‘sc’ was declared here 27 | int *sco, sc, n1, n2, i1, i2, j1, j2, al_buf_size; | ^~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c align_utils.c -o align_utils.o align_utils.c: In function ‘PairwiseAlignmentsSingleSubject_align_aligned’: align_utils.c:232:78: warning: ‘indelStartPattern’ may be used uninitialized [-Wmaybe-uninitialized] 232 | if ((numberOfIndelPattern == 0) || (jPattern < indelStartPattern)) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:21: note: ‘indelStartPattern’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:238:55: warning: ‘indelWidthPattern’ may be used uninitialized [-Wmaybe-uninitialized] 238 | for (k = 0; k < indelWidthPattern; k++) { | ~~^~~~~~~~~~~~~~~~~~~ align_utils.c:221:40: note: ‘indelWidthPattern’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:231:63: warning: ‘indelStartSubject’ may be used uninitialized [-Wmaybe-uninitialized] 231 | if ((numberOfIndelSubject == 0) || (j < indelStartSubject)) { | ~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:59: note: ‘indelStartSubject’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:250:42: warning: ‘indelWidthSubject’ may be used uninitialized [-Wmaybe-uninitialized] 250 | jPattern += indelWidthSubject; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:78: note: ‘indelWidthSubject’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c find_palindromes.c -o find_palindromes.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c gtestsim.c -o gtestsim.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c inject_code.c -o inject_code.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c letter_frequency.c -o letter_frequency.o letter_frequency.c: In function ‘XString_letterFrequencyInSlidingView’: letter_frequency.c:536:31: warning: too many arguments for format [-Wformat-extra-args] 536 | error("Biostrings internal error in " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ letter_frequency.c: In function ‘XStringSet_letterFrequency’: letter_frequency.c:589:31: warning: too many arguments for format [-Wformat-extra-args] 589 | error("Biostrings internal error in " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ letter_frequency.c: In function ‘XStringSet_two_way_letter_frequency’: letter_frequency.c:957:48: warning: unused variable ‘x_pos’ [-Wunused-variable] 957 | int x_width, y_width, x_length, *ans_mat, i, x_pos; | ^~~~~ letter_frequency.c:956:13: warning: unused variable ‘ans_dimnames’ [-Wunused-variable] 956 | SEXP ans, ans_dimnames; | ^~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c lowlevel_matching.c -o lowlevel_matching.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_PWM.c -o match_PWM.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern.c -o match_pattern.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern_indels.c -o match_pattern_indels.o match_pattern_indels.c:7:13: warning: ‘test_match_pattern_indels’ defined but not used [-Wunused-function] 7 | static void test_match_pattern_indels(const char *p, const char *s, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern_shiftor.c -o match_pattern_shiftor.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict.c -o match_pdict.o In function ‘vcount_PDict3Parts_XStringSet’, inlined from ‘vmatch_PDict3Parts_XStringSet’ at match_pdict.c:508:10: match_pdict.c:419:33: warning: ‘ans_col’ may be used uninitialized [-Wmaybe-uninitialized] 419 | ans_col += tb_length; | ~~~~~~~~^~~~~~~~~~~~ match_pdict.c: In function ‘vmatch_PDict3Parts_XStringSet’: match_pdict.c:392:65: note: ‘ans_col’ was declared here 392 | int tb_length, S_length, collapse0, i, j, match_count, *ans_col; | ^~~~~~~ In function ‘vcount_XStringSet_XStringSet’, inlined from ‘vmatch_XStringSet_XStringSet’ at match_pdict.c:542:10: match_pdict.c:470:41: warning: ‘ans_elt’ may be used uninitialized [-Wmaybe-uninitialized] 470 | ans_elt += P_length; | ~~~~~~~~^~~~~~~~~~~ match_pdict.c: In function ‘vmatch_XStringSet_XStringSet’: match_pdict.c:441:64: note: ‘ans_elt’ was declared here 441 | int P_length, S_length, collapse0, i, j, match_count, *ans_elt; | ^~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o match_pdict_ACtree2.c: In function ‘ACtree2_summary’: match_pdict_ACtree2.c:732:45: warning: unknown conversion type character ‘)’ in format [-Wformat=] 732 | Rprintf("| - %u nodes (%.2f%) with %d links\n", | ^ match_pdict_ACtree2.c: In function ‘split_and_move_pointers’: match_pdict_ACtree2.c:1031:17: warning: variable ‘node0’ set but not used [-Wunused-but-set-variable] 1031 | ACnode *node0, *node1, *node2; | ^~~~~ match_pdict_ACtree2.c: In function ‘merge_pointers’: match_pdict_ACtree2.c:1076:17: warning: variable ‘node0’ set but not used [-Wunused-but-set-variable] 1076 | ACnode *node0, *node1, *node2; | ^~~~~ match_pdict_ACtree2.c: At top level: match_pdict_ACtree2.c:602:21: warning: ‘a_nice_max_nodeextbuf_nelt’ defined but not used [-Wunused-function] 602 | static unsigned int a_nice_max_nodeextbuf_nelt(int nnodes) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ match_pdict_ACtree2.c:139:13: warning: ‘debug_node_counting_functions’ defined but not used [-Wunused-function] 139 | static void debug_node_counting_functions(int maxdepth) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict_Twobit.c -o match_pdict_Twobit.o In file included from /usr/include/R/Rdefines.h:41, from /usr/lib/R/library/S4Vectors/include/S4Vectors_defines.h:18, from /usr/lib/R/library/IRanges/include/IRanges_defines.h:18, from ../inst/include/Biostrings_defines.h:18, from Biostrings.h:1, from match_pdict_Twobit.c:10: In function ‘Twobit_asLIST’, inlined from ‘build_Twobit’ at match_pdict_Twobit.c:145:2: match_pdict_Twobit.c:75:27: warning: ‘twobit_sign2pos’ may be used uninitialized [-Wmaybe-uninitialized] 75 | PROTECT(ans_elt = new_XInteger_from_tag("XInteger", twobit_sign2pos)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ match_pdict_Twobit.c: In function ‘build_Twobit’: match_pdict_Twobit.c:110:19: note: ‘twobit_sign2pos’ was declared here 110 | SEXP ans, twobit_sign2pos; | ^~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict_utils.c -o match_pdict_utils.o match_pdict_utils.c: In function ‘match_ppheadtail0’: match_pdict_utils.c:653:56: warning: unused variable ‘ncol’ [-Wunused-variable] 653 | int nelt, min_safe_tb_end, max_safe_tb_end, j, ncol; | ^~~~ match_pdict_utils.c: In function ‘match_ppheadtail’: match_pdict_utils.c:713:13: warning: unused variable ‘nelt’ [-Wunused-variable] 713 | int nelt, nkey0, nkey1, nkey2, i, key; | ^~~~ match_pdict_utils.c: In function ‘_match_pdict_all_flanks’: match_pdict_utils.c:820:51: warning: unused variable ‘subtotal_NFC’ [-Wunused-variable] 820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL; | ^~~~~~~~~~~~ match_pdict_utils.c:820:34: warning: unused variable ‘total_NFC’ [-Wunused-variable] 820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL; | ^~~~~~~~~ match_pdict_utils.c:819:40: warning: unused variable ‘NFC’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~ match_pdict_utils.c:819:33: warning: unused variable ‘nloci’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~~~ match_pdict_utils.c:819:27: warning: unused variable ‘ndup’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~~ match_pdict_utils.c: At top level: match_pdict_utils.c:261:13: warning: ‘match_headtail_by_loc’ defined but not used [-Wunused-function] 261 | static void match_headtail_by_loc(const HeadTail *headtail, | ^~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c match_reporting.c -o match_reporting.o match_reporting.c: In function ‘_new_MatchBuf’: match_reporting.c:49:23: warning: too many arguments for format [-Wformat-extra-args] 49 | error("Biostrings internal error in _new_MatchBuf(): ", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c matchprobes.c -o matchprobes.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c pmatchPattern.c -o pmatchPattern.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c read_fasta_files.c -o read_fasta_files.o In function ‘new_FASTAloaderExt’, inlined from ‘read_fasta_files’ at read_fasta_files.c:430:15: read_fasta_files.c:186:16: warning: ‘loader_ext.seq_elt_holder.ptr’ may be used uninitialized [-Wmaybe-uninitialized] 186 | return loader_ext; | ^~~~~~~~~~ read_fasta_files.c: In function ‘read_fasta_files’: read_fasta_files.c:182:24: note: ‘loader_ext’ declared here 182 | FASTAloaderExt loader_ext; | ^~~~~~~~~~ In function ‘new_FASTAloaderExt’, inlined from ‘read_fasta_files’ at read_fasta_files.c:430:15: read_fasta_files.c:186:16: warning: ‘loader_ext.seq_elt_holder.length’ may be used uninitialized [-Wmaybe-uninitialized] 186 | return loader_ext; | ^~~~~~~~~~ read_fasta_files.c: In function ‘read_fasta_files’: read_fasta_files.c:182:24: note: ‘loader_ext’ declared here 182 | FASTAloaderExt loader_ext; | ^~~~~~~~~~ In function ‘new_FASTAloaderExt’, inlined from ‘read_fasta_blocks’ at read_fasta_files.c:596:15: read_fasta_files.c:186:16: warning: ‘loader_ext.seq_elt_holder.ptr’ is used uninitialized [-Wuninitialized] 186 | return loader_ext; | ^~~~~~~~~~ read_fasta_files.c: In function ‘read_fasta_blocks’: read_fasta_files.c:182:24: note: ‘loader_ext’ declared here 182 | FASTAloaderExt loader_ext; | ^~~~~~~~~~ In function ‘new_FASTAloaderExt’, inlined from ‘read_fasta_blocks’ at read_fasta_files.c:596:15: read_fasta_files.c:186:16: warning: ‘loader_ext.seq_elt_holder.length’ is used uninitialized [-Wuninitialized] 186 | return loader_ext; | ^~~~~~~~~~ read_fasta_files.c: In function ‘read_fasta_blocks’: read_fasta_files.c:182:24: note: ‘loader_ext’ declared here 182 | FASTAloaderExt loader_ext; | ^~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c read_fastq_files.c -o read_fastq_files.o read_fastq_files.c: In function ‘parse_FASTQ_file’: read_fastq_files.c:406:28: warning: ‘dont_load’ may be used uninitialized [-Wmaybe-uninitialized] 406 | if (dont_load || loader->new_qualid_hook == NULL) | ^ read_fastq_files.c:309:26: note: ‘dont_load’ was declared here 309 | lineinrecno, dont_load; | ^~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c replaceAt.c -o replaceAt.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c replace_letter_at.c -o replace_letter_at.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c strutils.c -o strutils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c translate.c -o translate.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c unstrsplit_methods.c -o unstrsplit_methods.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o utils.c: In function ‘_get_twobit_signature’: utils.c:157:16: warning: ‘twobit_sign’ may be used uninitialized [-Wmaybe-uninitialized] 157 | return twobit_sign; | ^~~~~~~~~~~ utils.c:150:16: note: ‘twobit_sign’ was declared here 150 | int i, twobit_sign; | ^~~~~~~~~~~ utils.c: In function ‘_get_twobit_signature_at’: utils.c:174:16: warning: ‘twobit_sign’ may be used uninitialized [-Wmaybe-uninitialized] 174 | return twobit_sign; | ^~~~~~~~~~~ utils.c:164:19: note: ‘twobit_sign’ was declared here 164 | int i, j, twobit_sign; | ^~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c xscat.c -o xscat.o In file included from /usr/include/R/Rdefines.h:41, from /usr/lib/R/library/S4Vectors/include/S4Vectors_defines.h:18, from /usr/lib/R/library/IRanges/include/IRanges_defines.h:18, from ../inst/include/Biostrings_defines.h:18, from Biostrings.h:1, from xscat.c:1: xscat.c: In function ‘XString_xscat’: /usr/include/R/Rdefines.h:91:33: warning: ‘ans_length’ may be used uninitialized [-Wmaybe-uninitialized] 91 | #define NEW_RAW(n) Rf_allocVector(RAWSXP,n) | ^~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:18:20: note: ‘ans_length’ was declared here 18 | int nargs, ans_length, tag_offset, j; | ^~~~~~~~~~ xscat.c:52:23: warning: ‘ans_classname’ may be used uninitialized [-Wmaybe-uninitialized] 52 | PROTECT(ans = new_XRaw_from_tag(ans_classname, ans_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:20:21: note: ‘ans_classname’ was declared here 20 | const char *ans_classname; | ^~~~~~~~~~~~~ xscat.c: In function ‘XStringSet_xscat’: /usr/include/R/Rdefines.h:85:33: warning: ‘ans_length’ may be used uninitialized [-Wmaybe-uninitialized] 85 | #define NEW_INTEGER(n) Rf_allocVector(INTSXP,n) | ^~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:66:39: note: ‘ans_length’ was declared here 66 | int nargs, *arg_lengths, *ii, ans_length, i, j, *width; | ^~~~~~~~~~ xscat.c:108:23: warning: ‘ans_element_type’ may be used uninitialized [-Wmaybe-uninitialized] 108 | PROTECT(ans = _alloc_XStringSet(ans_element_type, ans_width)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:68:21: note: ‘ans_element_type’ was declared here 68 | const char *ans_element_type; | ^~~~~~~~~~~~~~~~ gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib/R/lib -lR installing to /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386/usr/lib/R/library/00LOCK-Biostrings/00new/Biostrings/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘twoWayAlphabetFrequencyByQuality’ with signature ‘"QualityScaledXStringSet"’: no definition for class “QualityScaledXStringSet” Creating a new generic function for ‘strsplit’ in package ‘Biostrings’ Creating a generic function for ‘ls’ from package ‘base’ in package ‘Biostrings’ Creating a new generic function for ‘pattern’ in package ‘Biostrings’ Creating a new generic function for ‘offset’ in package ‘Biostrings’ ** help *** installing help indices converting help for package ‘Biostrings’ finding HTML links ... done AAString-class html AMINO_ACID_CODE html AlignedXStringSet-class html Biostrings-internals html DNAString-class html GENETIC_CODE html HNF4alpha html IUPAC_CODE_MAP html InDel-class html MIndex-class html MaskedXString-class html MultipleAlignment-class html finding level-2 HTML links ... done PDict-class html PairwiseAlignments-class html PairwiseAlignments-io html QualityScaledXStringSet-class html RNAString-class html XString-class html XStringPartialMatches-class html XStringQuality-class html XStringSet-class html XStringSet-comparison html XStringSet-io html XStringSetList-class html XStringViews-class html align-utils html chartr html detail html dinucleotideFrequencyTest html findPalindromes html getSeq html gregexpr2 html injectHardMask html letter html letterFrequency html longestConsecutive html lowlevel-matching html maskMotif html match-utils html matchLRPatterns html matchPDict-exact html matchPDict-inexact html matchPWM html matchPattern html matchProbePair html matchprobes html misc html needwunsQS html nucleotideFrequency html padAndClip html pairwiseAlignment html phiX174Phage html pid html pmatchPattern html replaceAt html replaceLetterAt html reverseComplement html seqinfo html stringDist html substitution_matrices html toComplex html translate html trimLRPatterns html xscat html yeastSEQCHR1 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Biostrings) + test -d Biostrings/src + cd Biostrings/src + rm -f BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o Biostrings.so + rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386/usr/lib/R/library/R.css + rm -f /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386/usr/lib/R/library/Biostrings/doc/GenomeSearching.R + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.64.1-8.fc41 --unique-debug-suffix -2.64.1-8.fc41.i386 --unique-debug-src-base R-Biostrings-2.64.1-8.fc41.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Biostrings find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Biostrings-2.64.1-8.fc41.i386 807 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Al3awl + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Biostrings-2.64.1-8.fc41.i686 Provides: R(Biostrings) = 2.64.1 R-Biostrings = 2.64.1-8.fc41 R-Biostrings(x86-32) = 2.64.1-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.4 R(BiocGenerics) >= 0.37.0 R(GenomeInfoDb) R(IRanges) >= 2.30.1 R(S4Vectors) >= 0.27.12 R(XVector) >= 0.29.2 R(crayon) R(grDevices) R(graphics) R(methods) R(stats) R(utils) R-core >= 4.0.0 libR.so libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_ABI_DT_RELR) rtld(GNU_HASH) Suggests: R(BSgenome) >= 1.13.14 R(BSgenome.Celegans.UCSC.ce2) >= 1.3.11 R(BSgenome.Dmelanogaster.UCSC.dm3) >= 1.3.11 R(BSgenome.Hsapiens.UCSC.hg18) R(GenomicFeatures) >= 1.3.14 R(RUnit) R(affy) >= 1.41.3 R(affydata) >= 1.11.5 R(drosophila2probe) R(hgu133aprobe) R(hgu95av2cdf) R(hgu95av2probe) Enhances: R(Rmpi) Processing files: R-Biostrings-devel-2.64.1-8.fc41.i686 Provides: R-Biostrings-devel = 2.64.1-8.fc41 R-Biostrings-devel(x86-32) = 2.64.1-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Biostrings-debugsource-2.64.1-8.fc41.i686 Provides: R-Biostrings-debugsource = 2.64.1-8.fc41 R-Biostrings-debugsource(x86-32) = 2.64.1-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Biostrings-debuginfo-2.64.1-8.fc41.i686 Provides: R-Biostrings-debuginfo = 2.64.1-8.fc41 R-Biostrings-debuginfo(x86-32) = 2.64.1-8.fc41 debuginfo(build-id) = 45504b122ae0c4187206c93089e1ae02b3094a80 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Biostrings-debugsource(x86-32) = 2.64.1-8.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386 Wrote: /builddir/build/RPMS/R-Biostrings-devel-2.64.1-8.fc41.i686.rpm Wrote: /builddir/build/RPMS/R-Biostrings-debugsource-2.64.1-8.fc41.i686.rpm Wrote: /builddir/build/RPMS/R-Biostrings-debuginfo-2.64.1-8.fc41.i686.rpm Wrote: /builddir/build/RPMS/R-Biostrings-2.64.1-8.fc41.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.yGQ6ST + umask 022 + cd /builddir/build/BUILD + cd Biostrings + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.i386 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.U9WCL5 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Biostrings-SPECPARTS + rm -rf Biostrings Biostrings.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-Biostrings-2.64.1-8.fc41.src.rpm Finish: build phase for R-Biostrings-2.64.1-8.fc41.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-i686-1714051927.453482/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-i686-1714051927.453482/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-i686-1714051927.453482/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-8.fc41.src.rpm) Config(child) 1 minutes 41 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Biostrings-debuginfo", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "i686" }, { "name": "R-Biostrings", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "src" }, { "name": "R-Biostrings", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "i686" }, { "name": "R-Biostrings-debugsource", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "i686" }, { "name": "R-Biostrings-devel", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "i686" } ] } RPMResults finished