Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c213' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6940943-fedora-39-ppc64le --chroot fedora-39-ppc64le Version: 0.70 PID: 7024 Logging PID: 7025 Task: {'appstream': False, 'background': True, 'build_id': 6940943, 'buildroot_pkgs': [], 'chroot': 'fedora-39-ppc64le', 'enable_net': False, 'fedora_review': False, 'git_hash': 'abb5f680d5663683bd1d3faa9996dbe9c8e1f1c7', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/COPASI', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'COPASI', 'package_version': '4.42.284-5', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-39-ppc64le/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/releng', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/releng', 'tags': [], 'task_id': '6940943-fedora-39-ppc64le', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/COPASI /var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/COPASI', '/var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI'... Running: git checkout abb5f680d5663683bd1d3faa9996dbe9c8e1f1c7 -- cmd: ['git', 'checkout', 'abb5f680d5663683bd1d3faa9996dbe9c8e1f1c7', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI rc: 0 stdout: stderr: Note: switching to 'abb5f680d5663683bd1d3faa9996dbe9c8e1f1c7'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at abb5f68 automatic import of COPASI Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading COPASI-Build-284.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o COPASI-Build-284.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/COPASI/COPASI-Build-284.tar.gz/md5/ef461df70cde8900517de385642ee4ae/COPASI-Build-284.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 25.1M 100 25.1M 0 0 10.4M 0 0:00:02 0:00:02 --:--:-- 10.4M INFO: Reading stdout from command: md5sum COPASI-Build-284.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI/COPASI.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1705956496.802490 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI/COPASI.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1705956496.802490 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI/COPASI.spec) Config(fedora-39-ppc64le) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-ppc64le-bootstrap-1705956496.802490/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-ppc64le-bootstrap-1705956496.802490/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/5e71cf379ce8c11c753d74dd3fd8330d085628218bb73dc81a51ff6d47689e47/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/5e71cf379ce8c11c753d74dd3fd8330d085628218bb73dc81a51ff6d47689e47/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 14 MB/s | 18 MB 00:01 Additional repo http_kojipkgs_fedoraproject_org 31 MB/s | 71 MB 00:02 fedora 18 MB/s | 83 MB 00:04 updates 17 MB/s | 26 MB 00:01 Last metadata expiration check: 0:00:07 ago on Mon Jan 22 20:50:02 2024. Package python3-dnf-4.18.1-2.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing: python3-dnf-plugins-core noarch 4.4.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 496 k dnf-data noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 549 k yum noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs ppc64le 1:1.14.10-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 177 k python3-dateutil noarch 1:2.8.2-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus ppc64le 1.3.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 150 k python3-distro noarch 1.9.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k python3-six noarch 1.16.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd ppc64le 235-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 102 k Transaction Summary ========================================================================================================================== Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): dbus-libs-1.14.10-1.fc40.ppc64le.rpm 515 kB/s | 177 kB 00:00 (2/11): python3-dbus-1.3.2-4.fc39.ppc64le.rpm 424 kB/s | 150 kB 00:00 (3/11): python3-dateutil-2.8.2-11.fc40.noarch.r 923 kB/s | 345 kB 00:00 (4/11): python3-distro-1.9.0-1.fc40.noarch.rpm 1.3 MB/s | 45 kB 00:00 (5/11): python3-dnf-plugins-core-4.4.4-1.fc40.n 9.6 MB/s | 302 kB 00:00 (6/11): python3-systemd-235-5.fc39.ppc64le.rpm 5.2 MB/s | 102 kB 00:00 (7/11): python3-six-1.16.0-12.fc39.noarch.rpm 1.4 MB/s | 41 kB 00:00 (8/11): dnf-4.18.2-1.fc40.noarch.rpm 12 MB/s | 496 kB 00:00 (9/11): dnf-data-4.18.2-1.fc40.noarch.rpm 1.2 MB/s | 39 kB 00:00 (10/11): python3-dnf-4.18.2-1.fc40.noarch.rpm 14 MB/s | 549 kB 00:00 (11/11): yum-4.18.2-1.fc40.noarch.rpm 896 kB/s | 37 kB 00:00 -------------------------------------------------------------------------------- Total 4.7 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.18.2-1.fc40.noarch 1/15 Upgrading : python3-dnf-4.18.2-1.fc40.noarch 2/15 Upgrading : dnf-4.18.2-1.fc40.noarch 3/15 Running scriptlet: dnf-4.18.2-1.fc40.noarch 3/15 Installing : python3-systemd-235-5.fc39.ppc64le 4/15 Installing : python3-six-1.16.0-12.fc39.noarch 5/15 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 6/15 Installing : python3-distro-1.9.0-1.fc40.noarch 7/15 Installing : dbus-libs-1:1.14.10-1.fc40.ppc64le 8/15 Installing : python3-dbus-1.3.2-4.fc39.ppc64le 9/15 Installing : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 10/15 Upgrading : yum-4.18.2-1.fc40.noarch 11/15 Cleanup : yum-4.18.1-2.fc39.noarch 12/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : dnf-4.18.1-2.fc39.noarch 13/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : python3-dnf-4.18.1-2.fc39.noarch 14/15 Cleanup : dnf-data-4.18.1-2.fc39.noarch 15/15 Running scriptlet: dnf-data-4.18.1-2.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-1.fc40.ppc64le 1/15 Verifying : python3-dateutil-1:2.8.2-11.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-4.fc39.ppc64le 3/15 Verifying : python3-distro-1.9.0-1.fc40.noarch 4/15 Verifying : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 5/15 Verifying : python3-six-1.16.0-12.fc39.noarch 6/15 Verifying : python3-systemd-235-5.fc39.ppc64le 7/15 Verifying : dnf-4.18.2-1.fc40.noarch 8/15 Verifying : dnf-4.18.1-2.fc39.noarch 9/15 Verifying : dnf-data-4.18.2-1.fc40.noarch 10/15 Verifying : dnf-data-4.18.1-2.fc39.noarch 11/15 Verifying : python3-dnf-4.18.2-1.fc40.noarch 12/15 Verifying : python3-dnf-4.18.1-2.fc39.noarch 13/15 Verifying : yum-4.18.2-1.fc40.noarch 14/15 Verifying : yum-4.18.1-2.fc39.noarch 15/15 Upgraded: dnf-4.18.2-1.fc40.noarch dnf-data-4.18.2-1.fc40.noarch python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch Installed: dbus-libs-1:1.14.10-1.fc40.ppc64le python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.ppc64le python3-distro-1.9.0-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.ppc64le Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-ppc64le-1705956496.802490/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.ppc64le rpm-sequoia-1.5.0-1.fc39.ppc64le python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 32 MB/s | 18 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 22 MB/s | 71 MB 00:03 fedora 21 MB/s | 83 MB 00:03 updates 16 MB/s | 26 MB 00:01 Last metadata expiration check: 0:00:07 ago on Mon Jan 22 20:51:52 2024. Dependencies resolved. ========================================================================================================================================= Package Arch Version Repository Size ========================================================================================================================================= Installing group/module packages: bash ppc64le 5.2.26-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 M bzip2 ppc64le 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils ppc64le 9.4-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 M cpio ppc64le 2.14-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 279 k diffutils ppc64le 3.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 399 k fedora-release-common noarch 40-0.29 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k findutils ppc64le 1:4.9.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 531 k gawk ppc64le 5.3.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M glibc-minimal-langpack ppc64le 2.38.9000-33.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95 k grep ppc64le 3.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 297 k gzip ppc64le 1.12-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163 k info ppc64le 7.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 203 k patch ppc64le 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137 k redhat-rpm-config noarch 280-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k rpm-build ppc64le 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 73 k sed ppc64le 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 303 k shadow-utils ppc64le 2:4.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar ppc64le 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 874 k unzip ppc64le 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 190 k util-linux ppc64le 2.39.3-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M which ppc64le 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k xz ppc64le 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 535 k Installing dependencies: alternatives ppc64le 1.26-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k ansible-srpm-macros noarch 1-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs ppc64le 4.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134 k authselect ppc64le 1.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145 k authselect-libs ppc64le 1.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 239 k basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils ppc64le 2.41-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 M binutils-gold ppc64le 2.41-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M bzip2-libs ppc64le 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 47 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863 k coreutils-common ppc64le 9.4-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib ppc64le 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 85 k crypto-policies noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69 k curl ppc64le 8.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 376 k cyrus-sasl-lib ppc64le 2.1.28-17.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 875 k debugedit ppc64le 5.0-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81 k dwz ppc64le 0.15-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 147 k ed ppc64le 1.20-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 85 k efi-srpm-macros noarch 5-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils ppc64le 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 575 k elfutils-debuginfod-client ppc64le 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k elfutils-default-yama-scope noarch 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf ppc64le 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 203 k elfutils-libs 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========================================================================================================================================= Install 153 Packages Total download size: 56 M Installed size: 323 M Downloading Packages: (1/153): ansible-srpm-macros-1-12.fc40.noarch.r 158 kB/s | 21 kB 00:00 (2/153): alternatives-1.26-1.fc40.ppc64le.rpm 295 kB/s | 42 kB 00:00 (3/153): audit-libs-4.0-1.fc40.ppc64le.rpm 3.5 MB/s | 134 kB 00:00 (4/153): authselect-1.5.0-1.fc40.ppc64le.rpm 3.5 MB/s | 145 kB 00:00 (5/153): authselect-libs-1.5.0-1.fc40.ppc64le.r 7.3 MB/s | 239 kB 00:00 (6/153): basesystem-11-18.fc39.noarch.rpm 319 kB/s | 7.2 kB 00:00 (7/153): gdb-minimal-14.1-5.fc40.ppc64le.rpm 19 MB/s | 4.2 MB 00:00 (8/153): bash-5.2.26-1.fc40.ppc64le.rpm 23 MB/s | 1.9 MB 00:00 (9/153): bzip2-1.0.8-16.fc39.ppc64le.rpm 1.8 MB/s | 53 kB 00:00 (10/153): bzip2-libs-1.0.8-16.fc39.ppc64le.rpm 1.8 MB/s | 47 kB 00:00 (11/153): binutils-gold-2.41-30.fc40.ppc64le.rp 7.1 MB/s | 1.1 MB 00:00 (12/153): ca-certificates-2023.2.62_v7.0.401-4. 19 MB/s | 863 kB 00:00 (13/153): coreutils-9.4-3.fc40.ppc64le.rpm 28 MB/s | 1.4 MB 00:00 (14/153): coreutils-common-9.4-3.fc40.ppc64le.r 30 MB/s | 2.1 MB 00:00 (15/153): cpio-2.14-5.fc40.ppc64le.rpm 8.9 MB/s | 279 kB 00:00 (16/153): cracklib-2.9.11-2.fc39.ppc64le.rpm 3.5 MB/s | 85 kB 00:00 (17/153): crypto-policies-20231204-1.git1e3a2e4 1.8 MB/s | 69 kB 00:00 (18/153): curl-8.5.0-1.fc40.ppc64le.rpm 11 MB/s | 376 kB 00:00 (19/153): cyrus-sasl-lib-2.1.28-17.fc40.ppc64le 18 MB/s | 875 kB 00:00 (20/153): debugedit-5.0-12.fc40.ppc64le.rpm 2.7 MB/s | 81 kB 00:00 (21/153): diffutils-3.10-3.fc39.ppc64le.rpm 15 MB/s | 399 kB 00:00 (22/153): binutils-2.41-30.fc40.ppc64le.rpm 16 MB/s | 6.3 MB 00:00 (23/153): dwz-0.15-3.fc39.ppc64le.rpm 2.7 MB/s | 147 kB 00:00 (24/153): ed-1.20-1.fc40.ppc64le.rpm 2.0 MB/s | 85 kB 00:00 (25/153): efi-srpm-macros-5-9.fc39.noarch.rpm 1.0 MB/s | 22 kB 00:00 (26/153): elfutils-0.190-4.fc40.ppc64le.rpm 19 MB/s | 575 kB 00:00 (27/153): elfutils-debuginfod-client-0.190-4.fc 1.8 MB/s | 39 kB 00:00 (28/153): elfutils-default-yama-scope-0.190-4.f 504 kB/s | 13 kB 00:00 (29/153): elfutils-libelf-0.190-4.fc40.ppc64le. 5.5 MB/s | 203 kB 00:00 (30/153): elfutils-libs-0.190-4.fc40.ppc64le.rp 8.7 MB/s | 295 kB 00:00 (31/153): fedora-gpg-keys-40-0.2.noarch.rpm 4.6 MB/s | 119 kB 00:00 (32/153): fedora-release-40-0.29.noarch.rpm 516 kB/s | 10 kB 00:00 (33/153): fedora-release-common-40-0.29.noarch. 957 kB/s | 21 kB 00:00 (34/153): fedora-release-identity-basic-40-0.29 383 kB/s | 11 kB 00:00 (35/153): fedora-repos-40-0.2.noarch.rpm 481 kB/s | 9.3 kB 00:00 (36/153): fedora-repos-rawhide-40-0.2.noarch.rp 425 kB/s | 8.9 kB 00:00 (37/153): file-5.45-1.fc40.ppc64le.rpm 2.3 MB/s | 50 kB 00:00 (38/153): file-libs-5.45-1.fc40.ppc64le.rpm 21 MB/s | 774 kB 00:00 (39/153): findutils-4.9.0-6.fc40.ppc64le.rpm 16 MB/s | 531 kB 00:00 (40/153): fonts-srpm-macros-2.0.5-12.fc39.noarc 1.1 MB/s | 26 kB 00:00 (41/153): 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| 297 kB 00:00 (56/153): gzip-1.12-6.fc39.ppc64le.rpm 6.5 MB/s | 163 kB 00:00 (57/153): info-7.1-1.fc40.ppc64le.rpm 8.7 MB/s | 203 kB 00:00 (58/153): jansson-2.13.1-7.fc39.ppc64le.rpm 1.7 MB/s | 49 kB 00:00 (59/153): kernel-srpm-macros-1.0-20.fc39.noarch 407 kB/s | 10 kB 00:00 (60/153): keyutils-libs-1.6.3-1.fc40.ppc64le.rp 1.3 MB/s | 33 kB 00:00 (61/153): libacl-2.3.1-11.fc40.ppc64le.rpm 1.2 MB/s | 26 kB 00:00 (62/153): krb5-libs-1.21.2-3.fc40.ppc64le.rpm 25 MB/s | 838 kB 00:00 (63/153): libarchive-3.7.2-1.fc40.ppc64le.rpm 9.8 MB/s | 477 kB 00:00 (64/153): libattr-2.5.2-1.fc40.ppc64le.rpm 553 kB/s | 19 kB 00:00 (65/153): libblkid-2.39.3-2.fc40.ppc64le.rpm 3.6 MB/s | 132 kB 00:00 (66/153): libbrotli-1.1.0-1.fc40.ppc64le.rpm 10 MB/s | 380 kB 00:00 (67/153): libcap-2.69-1.fc40.ppc64le.rpm 2.4 MB/s | 89 kB 00:00 (68/153): libcap-ng-0.8.4-2.fc40.ppc64le.rpm 973 kB/s | 34 kB 00:00 (69/153): libcom_err-1.47.0-2.fc39.ppc64le.rpm 836 kB/s | 27 kB 00:00 (70/153): libcurl-8.5.0-1.fc40.ppc64le.rpm 11 MB/s | 384 kB 00:00 (71/153): libeconf-0.5.2-1.fc40.ppc64le.rpm 1.1 MB/s | 34 kB 00:00 (72/153): libevent-2.1.12-9.fc39.ppc64le.rpm 9.2 MB/s | 275 kB 00:00 (73/153): libfdisk-2.39.3-2.fc40.ppc64le.rpm 5.8 MB/s | 176 kB 00:00 (74/153): libffi-3.4.4-5.fc40.ppc64le.rpm 1.5 MB/s | 38 kB 00:00 (75/153): libidn2-2.3.4-3.fc39.ppc64le.rpm 5.2 MB/s | 114 kB 00:00 (76/153): libgcc-14.0.1-0.2.fc40.ppc64le.rpm 3.4 MB/s | 92 kB 00:00 (77/153): libgomp-14.0.1-0.2.fc40.ppc64le.rpm 12 MB/s | 341 kB 00:00 (78/153): libmount-2.39.3-2.fc40.ppc64le.rpm 4.4 MB/s | 176 kB 00:00 (79/153): libnghttp2-1.59.0-1.fc40.ppc64le.rpm 2.2 MB/s | 85 kB 00:00 (80/153): libnsl2-2.0.0-6.fc39.ppc64le.rpm 929 kB/s | 32 kB 00:00 (81/153): libpsl-0.21.5-1.fc40.ppc64le.rpm 2.5 MB/s | 65 kB 00:00 (82/153): libpwquality-1.4.5-6.fc39.ppc64le.rpm 3.9 MB/s | 112 kB 00:00 (83/153): libpkgconf-1.9.5-2.fc39.ppc64le.rpm 1.4 MB/s | 42 kB 00:00 (84/153): librtas-2.0.4-3.fc39.ppc64le.rpm 3.2 MB/s | 70 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.ppc64le 1/1 Preparing : 1/1 Installing : libgcc-14.0.1-0.2.fc40.ppc64le 1/153 Running scriptlet: libgcc-14.0.1-0.2.fc40.ppc64le 1/153 Installing : crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/153 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/153 Installing : fedora-release-identity-basic-40-0.29.noarch 3/153 Installing : fedora-repos-rawhide-40-0.2.noarch 4/153 Installing : fedora-gpg-keys-40-0.2.noarch 5/153 Installing : fedora-repos-40-0.2.noarch 6/153 Installing : fedora-release-common-40-0.29.noarch 7/153 Installing : fedora-release-40-0.29.noarch 8/153 Installing : setup-2.14.5-1.fc40.noarch 9/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-1.fc40.noarch 9/153 Installing : filesystem-3.18-6.fc39.ppc64le 10/153 Installing : basesystem-11-18.fc39.noarch 11/153 Installing : rust-srpm-macros-25.2-2.fc40.noarch 12/153 Installing : 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Installing : libtirpc-1.3.4-1.rc1.fc40.ppc64le 115/153 Running scriptlet: authselect-libs-1.5.0-1.fc40.ppc64le 116/153 Installing : authselect-libs-1.5.0-1.fc40.ppc64le 116/153 Installing : gzip-1.12-6.fc39.ppc64le 117/153 Installing : cracklib-2.9.11-2.fc39.ppc64le 118/153 Installing : libpwquality-1.4.5-6.fc39.ppc64le 119/153 Installing : authselect-1.5.0-1.fc40.ppc64le 120/153 Installing : libnsl2-2.0.0-6.fc39.ppc64le 121/153 Installing : pam-1.5.3-9.fc40.ppc64le 122/153 Installing : libssh-0.10.6-2.fc40.ppc64le 123/153 Installing : libarchive-3.7.2-1.fc40.ppc64le 124/153 Installing : libevent-2.1.12-9.fc39.ppc64le 125/153 Installing : openldap-2.6.6-1.fc39.ppc64le 126/153 Installing : libcurl-8.5.0-1.fc40.ppc64le 127/153 Installing : elfutils-libs-0.190-4.fc40.ppc64le 128/153 Installing : elfutils-debuginfod-client-0.190-4.fc40.ppc64le 129/153 Installing : binutils-gold-2.41-30.fc40.ppc64le 130/153 Running scriptlet: binutils-gold-2.41-30.fc40.ppc64le 130/153 Installing : binutils-2.41-30.fc40.ppc64le 131/153 Running scriptlet: binutils-2.41-30.fc40.ppc64le 131/153 Installing : gdb-minimal-14.1-5.fc40.ppc64le 132/153 Installing : elfutils-0.190-4.fc40.ppc64le 133/153 Installing : debugedit-5.0-12.fc40.ppc64le 134/153 Installing : curl-8.5.0-1.fc40.ppc64le 135/153 Installing : rpm-sequoia-1.5.0-2.fc40.ppc64le 136/153 Installing : rpm-libs-4.19.1-2.fc40.ppc64le 137/153 Running scriptlet: rpm-4.19.1-2.fc40.ppc64le 138/153 Installing : rpm-4.19.1-2.fc40.ppc64le 138/153 Installing : efi-srpm-macros-5-9.fc39.noarch 139/153 Installing : lua-srpm-macros-1-9.fc39.noarch 140/153 Installing : zig-srpm-macros-1-1.fc40.noarch 141/153 Installing : rpm-build-libs-4.19.1-2.fc40.ppc64le 142/153 Installing : ansible-srpm-macros-1-12.fc40.noarch 143/153 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 144/153 Installing : forge-srpm-macros-0.2.0-1.fc40.noarch 145/153 Installing : go-srpm-macros-3.3.1-1.fc40.noarch 146/153 Installing : python-srpm-macros-3.12-5.fc40.noarch 147/153 Installing : redhat-rpm-config-280-1.fc40.noarch 148/153 Installing : rpm-build-4.19.1-2.fc40.ppc64le 149/153 Installing : pyproject-srpm-macros-1.11.0-1.fc40.noarch 150/153 Installing : util-linux-2.39.3-2.fc40.ppc64le 151/153 Installing : which-2.21-40.fc39.ppc64le 152/153 Installing : info-7.1-1.fc40.ppc64le 153/153 Running scriptlet: filesystem-3.18-6.fc39.ppc64le 153/153 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.5.0-1.fc40.ppc64le 153/153 Running scriptlet: rpm-4.19.1-2.fc40.ppc64le 153/153 Running scriptlet: info-7.1-1.fc40.ppc64le 153/153 Installed: alternatives-1.26-1.fc40.ppc64le ansible-srpm-macros-1-12.fc40.noarch audit-libs-4.0-1.fc40.ppc64le authselect-1.5.0-1.fc40.ppc64le authselect-libs-1.5.0-1.fc40.ppc64le basesystem-11-18.fc39.noarch bash-5.2.26-1.fc40.ppc64le binutils-2.41-30.fc40.ppc64le binutils-gold-2.41-30.fc40.ppc64le bzip2-1.0.8-16.fc39.ppc64le bzip2-libs-1.0.8-16.fc39.ppc64le ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-3.fc40.ppc64le coreutils-common-9.4-3.fc40.ppc64le cpio-2.14-5.fc40.ppc64le cracklib-2.9.11-2.fc39.ppc64le crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.ppc64le cyrus-sasl-lib-2.1.28-17.fc40.ppc64le debugedit-5.0-12.fc40.ppc64le diffutils-3.10-3.fc39.ppc64le dwz-0.15-3.fc39.ppc64le ed-1.20-1.fc40.ppc64le efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.ppc64le elfutils-debuginfod-client-0.190-4.fc40.ppc64le elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.ppc64le elfutils-libs-0.190-4.fc40.ppc64le fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.29.noarch fedora-release-common-40-0.29.noarch fedora-release-identity-basic-40-0.29.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.ppc64le file-libs-5.45-1.fc40.ppc64le filesystem-3.18-6.fc39.ppc64le findutils-1:4.9.0-6.fc40.ppc64le fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.3.0-1.fc40.ppc64le gdb-minimal-14.1-5.fc40.ppc64le gdbm-1:1.23-4.fc39.ppc64le gdbm-libs-1:1.23-4.fc39.ppc64le ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-33.fc40.ppc64le glibc-common-2.38.9000-33.fc40.ppc64le glibc-gconv-extra-2.38.9000-33.fc40.ppc64le glibc-minimal-langpack-2.38.9000-33.fc40.ppc64le gmp-1:6.2.1-5.fc39.ppc64le gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.ppc64le gzip-1.12-6.fc39.ppc64le info-7.1-1.fc40.ppc64le jansson-2.13.1-7.fc39.ppc64le kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.ppc64le krb5-libs-1.21.2-3.fc40.ppc64le libacl-2.3.1-11.fc40.ppc64le libarchive-3.7.2-1.fc40.ppc64le libattr-2.5.2-1.fc40.ppc64le libblkid-2.39.3-2.fc40.ppc64le libbrotli-1.1.0-1.fc40.ppc64le libcap-2.69-1.fc40.ppc64le libcap-ng-0.8.4-2.fc40.ppc64le libcom_err-1.47.0-2.fc39.ppc64le libcurl-8.5.0-1.fc40.ppc64le libeconf-0.5.2-1.fc40.ppc64le libevent-2.1.12-9.fc39.ppc64le libfdisk-2.39.3-2.fc40.ppc64le libffi-3.4.4-5.fc40.ppc64le libgcc-14.0.1-0.2.fc40.ppc64le libgomp-14.0.1-0.2.fc40.ppc64le libidn2-2.3.4-3.fc39.ppc64le libmount-2.39.3-2.fc40.ppc64le libnghttp2-1.59.0-1.fc40.ppc64le libnsl2-2.0.0-6.fc39.ppc64le libpkgconf-1.9.5-2.fc39.ppc64le libpsl-0.21.5-1.fc40.ppc64le libpwquality-1.4.5-6.fc39.ppc64le librtas-2.0.4-3.fc39.ppc64le libselinux-3.6-2.fc40.ppc64le libsemanage-3.6-1.fc40.ppc64le libsepol-3.6-1.fc40.ppc64le libsmartcols-2.39.3-2.fc40.ppc64le libssh-0.10.6-2.fc40.ppc64le libssh-config-0.10.6-2.fc40.noarch libstdc++-14.0.1-0.2.fc40.ppc64le libtasn1-4.19.0-3.fc39.ppc64le libtirpc-1.3.4-1.rc1.fc40.ppc64le libunistring-1.1-5.fc40.ppc64le libutempter-1.2.1-10.fc39.ppc64le libuuid-2.39.3-2.fc40.ppc64le libverto-0.3.2-6.fc39.ppc64le libxcrypt-4.4.36-4.fc40.ppc64le libxml2-2.12.4-1.fc40.ppc64le libzstd-1.5.5-4.fc39.ppc64le lua-libs-5.4.6-3.fc39.ppc64le lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.ppc64le mpfr-4.2.1-1.fc40.ppc64le ncurses-base-6.4-9.20240113.fc40.noarch ncurses-libs-6.4-9.20240113.fc40.ppc64le ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.ppc64le openssl-libs-1:3.1.4-1.fc40.ppc64le p11-kit-0.25.3-1.fc40.ppc64le p11-kit-trust-0.25.3-1.fc40.ppc64le package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.ppc64le pam-libs-1.5.3-9.fc40.ppc64le patch-2.7.6-22.fc39.ppc64le pcre2-10.42-2.fc40.ppc64le pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.ppc64le pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.ppc64le popt-1.19-3.fc39.ppc64le publicsuffix-list-dafsa-20240107-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-7.fc40.ppc64le redhat-rpm-config-280-1.fc40.noarch rpm-4.19.1-2.fc40.ppc64le rpm-build-4.19.1-2.fc40.ppc64le rpm-build-libs-4.19.1-2.fc40.ppc64le rpm-libs-4.19.1-2.fc40.ppc64le rpm-sequoia-1.5.0-2.fc40.ppc64le rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.ppc64le setup-2.14.5-1.fc40.noarch shadow-utils-2:4.14.0-2.fc40.ppc64le sqlite-libs-3.45.0-1.fc40.ppc64le systemd-libs-255.2-2.fc40.ppc64le tar-2:1.35-2.fc40.ppc64le unzip-6.0-62.fc39.ppc64le util-linux-2.39.3-2.fc40.ppc64le util-linux-core-2.39.3-2.fc40.ppc64le which-2.21-40.fc39.ppc64le xxhash-libs-0.8.2-1.fc39.ppc64le xz-5.4.5-1.fc40.ppc64le xz-libs-5.4.5-1.fc40.ppc64le zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.ppc64le zlib-ng-compat-2.1.6-1.fc40.ppc64le zstd-1.5.5-4.fc39.ppc64le Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc40.ppc64le ansible-srpm-macros-1-12.fc40.noarch audit-libs-4.0-1.fc40.ppc64le authselect-1.5.0-1.fc40.ppc64le authselect-libs-1.5.0-1.fc40.ppc64le basesystem-11-18.fc39.noarch bash-5.2.26-1.fc40.ppc64le binutils-2.41-30.fc40.ppc64le binutils-gold-2.41-30.fc40.ppc64le bzip2-1.0.8-16.fc39.ppc64le bzip2-libs-1.0.8-16.fc39.ppc64le ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-3.fc40.ppc64le coreutils-common-9.4-3.fc40.ppc64le cpio-2.14-5.fc40.ppc64le cracklib-2.9.11-2.fc39.ppc64le crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.ppc64le cyrus-sasl-lib-2.1.28-17.fc40.ppc64le debugedit-5.0-12.fc40.ppc64le diffutils-3.10-3.fc39.ppc64le dwz-0.15-3.fc39.ppc64le ed-1.20-1.fc40.ppc64le efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.ppc64le elfutils-debuginfod-client-0.190-4.fc40.ppc64le elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.ppc64le elfutils-libs-0.190-4.fc40.ppc64le fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.29.noarch fedora-release-common-40-0.29.noarch fedora-release-identity-basic-40-0.29.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.ppc64le file-libs-5.45-1.fc40.ppc64le filesystem-3.18-6.fc39.ppc64le findutils-4.9.0-6.fc40.ppc64le fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.3.0-1.fc40.ppc64le gdb-minimal-14.1-5.fc40.ppc64le gdbm-1.23-4.fc39.ppc64le gdbm-libs-1.23-4.fc39.ppc64le ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-33.fc40.ppc64le glibc-common-2.38.9000-33.fc40.ppc64le glibc-gconv-extra-2.38.9000-33.fc40.ppc64le glibc-minimal-langpack-2.38.9000-33.fc40.ppc64le gmp-6.2.1-5.fc39.ppc64le gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.ppc64le gzip-1.12-6.fc39.ppc64le info-7.1-1.fc40.ppc64le jansson-2.13.1-7.fc39.ppc64le kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.ppc64le krb5-libs-1.21.2-3.fc40.ppc64le libacl-2.3.1-11.fc40.ppc64le libarchive-3.7.2-1.fc40.ppc64le libattr-2.5.2-1.fc40.ppc64le libblkid-2.39.3-2.fc40.ppc64le libbrotli-1.1.0-1.fc40.ppc64le libcap-2.69-1.fc40.ppc64le libcap-ng-0.8.4-2.fc40.ppc64le libcom_err-1.47.0-2.fc39.ppc64le libcurl-8.5.0-1.fc40.ppc64le libeconf-0.5.2-1.fc40.ppc64le libevent-2.1.12-9.fc39.ppc64le libfdisk-2.39.3-2.fc40.ppc64le libffi-3.4.4-5.fc40.ppc64le libgcc-14.0.1-0.2.fc40.ppc64le libgomp-14.0.1-0.2.fc40.ppc64le libidn2-2.3.4-3.fc39.ppc64le libmount-2.39.3-2.fc40.ppc64le libnghttp2-1.59.0-1.fc40.ppc64le libnsl2-2.0.0-6.fc39.ppc64le libpkgconf-1.9.5-2.fc39.ppc64le libpsl-0.21.5-1.fc40.ppc64le libpwquality-1.4.5-6.fc39.ppc64le librtas-2.0.4-3.fc39.ppc64le libselinux-3.6-2.fc40.ppc64le libsemanage-3.6-1.fc40.ppc64le libsepol-3.6-1.fc40.ppc64le libsmartcols-2.39.3-2.fc40.ppc64le libssh-0.10.6-2.fc40.ppc64le libssh-config-0.10.6-2.fc40.noarch libstdc++-14.0.1-0.2.fc40.ppc64le libtasn1-4.19.0-3.fc39.ppc64le libtirpc-1.3.4-1.rc1.fc40.ppc64le libunistring-1.1-5.fc40.ppc64le libutempter-1.2.1-10.fc39.ppc64le libuuid-2.39.3-2.fc40.ppc64le libverto-0.3.2-6.fc39.ppc64le libxcrypt-4.4.36-4.fc40.ppc64le libxml2-2.12.4-1.fc40.ppc64le libzstd-1.5.5-4.fc39.ppc64le lua-libs-5.4.6-3.fc39.ppc64le lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.ppc64le mpfr-4.2.1-1.fc40.ppc64le ncurses-base-6.4-9.20240113.fc40.noarch ncurses-libs-6.4-9.20240113.fc40.ppc64le ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.ppc64le openssl-libs-3.1.4-1.fc40.ppc64le p11-kit-0.25.3-1.fc40.ppc64le p11-kit-trust-0.25.3-1.fc40.ppc64le package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.ppc64le pam-libs-1.5.3-9.fc40.ppc64le patch-2.7.6-22.fc39.ppc64le pcre2-10.42-2.fc40.ppc64le pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.ppc64le pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.ppc64le popt-1.19-3.fc39.ppc64le publicsuffix-list-dafsa-20240107-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-7.fc40.ppc64le redhat-rpm-config-280-1.fc40.noarch rpm-4.19.1-2.fc40.ppc64le rpm-build-4.19.1-2.fc40.ppc64le rpm-build-libs-4.19.1-2.fc40.ppc64le rpm-libs-4.19.1-2.fc40.ppc64le rpm-sequoia-1.5.0-2.fc40.ppc64le rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.ppc64le setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.ppc64le sqlite-libs-3.45.0-1.fc40.ppc64le systemd-libs-255.2-2.fc40.ppc64le tar-1.35-2.fc40.ppc64le unzip-6.0-62.fc39.ppc64le util-linux-2.39.3-2.fc40.ppc64le util-linux-core-2.39.3-2.fc40.ppc64le which-2.21-40.fc39.ppc64le xxhash-libs-0.8.2-1.fc39.ppc64le xz-5.4.5-1.fc40.ppc64le xz-libs-5.4.5-1.fc40.ppc64le zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.ppc64le zlib-ng-compat-2.1.6-1.fc40.ppc64le zstd-1.5.5-4.fc39.ppc64le Start: buildsrpm Start: rpmbuild -bs sh: line 1: python3-config: command not found sh: line 1: python3-config: command not found Package Qt5Qwt6 was not found in the pkg-config search path. Perhaps you should add the directory containing `Qt5Qwt6.pc' to the PKG_CONFIG_PATH environment variable Package 'Qt5Qwt6', required by 'virtual:world', not found Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1705881600 Wrote: /builddir/build/SRPMS/COPASI-4.42.284-5.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-ppc64le-1705956496.802490/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-ppc64le-1705956496.802490/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-ppc64le-1705956496.802490/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-frzn1c0a/COPASI/COPASI.spec) Config(child) 4 minutes 23 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/COPASI-4.42.284-5.fc40.src.rpm) Config(fedora-39-ppc64le) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-ppc64le-bootstrap-1705956496.802490/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-ppc64le-bootstrap-1705956496.802490/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-ppc64le-1705956496.802490/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.ppc64le rpm-sequoia-1.5.0-1.fc39.ppc64le python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Finish: chroot init Start: build phase for COPASI-4.42.284-5.fc40.src.rpm Start: build setup for COPASI-4.42.284-5.fc40.src.rpm sh: line 1: python3-config: command not found sh: line 1: python3-config: command not found Package Qt5Qwt6 was not found in the pkg-config search path. Perhaps you should add the directory containing `Qt5Qwt6.pc' to the PKG_CONFIG_PATH environment variable Package 'Qt5Qwt6', required by 'virtual:world', not found Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1705881600 Wrote: /builddir/build/SRPMS/COPASI-4.42.284-5.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 25 kB/s | 1.5 kB 00:00 Copr repository 44 MB/s | 18 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 21 kB/s | 3.8 kB 00:00 fedora 45 kB/s | 3.8 kB 00:00 updates 68 kB/s | 4.9 kB 00:00 Package pkgconf-pkg-config-1.9.5-2.fc39.ppc64le is already installed. 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======================================================================================================================================================= Install 356 Packages Total download size: 257 M Installed size: 1.1 G Downloading Packages: (1/356): flexiblas-3.4.1-2.fc40.ppc64le.rpm 363 kB/s | 25 kB 00:00 (2/356): ImageMagick-7.1.1.26-4.fc40.ppc64le.rp 952 kB/s | 78 kB 00:00 (3/356): flexiblas-devel-3.4.1-2.fc40.ppc64le.r 5.4 MB/s | 109 kB 00:00 (4/356): flexiblas-netlib-3.4.1-2.fc40.ppc64le. 34 MB/s | 2.9 MB 00:00 (5/356): ImageMagick-libs-7.1.1.26-4.fc40.ppc64 15 MB/s | 2.7 MB 00:00 (6/356): flexiblas-netlib64-3.4.1-2.fc40.ppc64l 29 MB/s | 2.8 MB 00:00 (7/356): flexiblas-openblas-openmp-3.4.1-2.fc40 828 kB/s | 17 kB 00:00 (8/356): flexiblas-openblas-openmp64-3.4.1-2.fc 1.6 MB/s | 17 kB 00:00 (9/356): imath-3.1.9-5.fc40.ppc64le.rpm 5.1 MB/s | 94 kB 00:00 (10/356): graphite2-1.3.14-13.fc40.ppc64le.rpm 2.0 MB/s | 105 kB 00:00 (11/356): graphviz-9.0.0-8.fc40.ppc64le.rpm 59 MB/s | 5.1 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Running transaction test Transaction test succeeded. 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adobe-mappings-pdf-20190401-5.fc39.noarch alsa-lib-1.2.10-3.fc40.ppc64le annobin-docs-12.37-1.fc40.noarch annobin-plugin-gcc-12.37-1.fc40.ppc64le avahi-libs-0.8-24.fc39.ppc64le bison-3.8.2-6.fc40.ppc64le bzip2-devel-1.0.8-16.fc39.ppc64le cairo-1.18.0-1.fc40.ppc64le cairo-gobject-1.18.0-1.fc40.ppc64le cdparanoia-libs-10.2-42.fc39.ppc64le cmake-3.27.7-1.fc40.ppc64le cmake-data-3.27.7-1.fc40.noarch cmake-filesystem-3.27.7-1.fc40.ppc64le cmake-rpm-macros-3.27.7-1.fc40.noarch cpp-14.0.1-0.2.fc40.ppc64le cppunit-1.15.1-17.fc40.ppc64le cppunit-devel-1.15.1-17.fc40.ppc64le crossguid2-0.2.2-15.20190529gitca1bf4b.fc39.ppc64le crossguid2-devel-0.2.2-15.20190529gitca1bf4b.fc39.ppc64le crypto-policies-scripts-20231204-1.git1e3a2e4.fc40.noarch cups-libs-1:2.4.7-7.fc40.ppc64le dbus-libs-1:1.14.10-1.fc40.ppc64le default-fonts-core-sans-4.0-9.fc40.noarch desktop-file-utils-0.26-9.fc39.ppc64le double-conversion-3.3.0-1.fc40.ppc64le duktape-2.7.0-5.fc39.ppc64le emacs-filesystem-1:29.1-15.fc40.noarch expat-2.5.0-3.fc39.ppc64le expat-devel-2.5.0-3.fc39.ppc64le f2c-20210928-6.fc39.ppc64le f2c-libs-20210928-6.fc39.ppc64le fftw-libs-double-3.3.10-10.fc40.ppc64le flex-2.6.4-14.fc40.ppc64le flexiblas-3.4.1-2.fc40.ppc64le flexiblas-devel-3.4.1-2.fc40.ppc64le flexiblas-netlib-3.4.1-2.fc40.ppc64le flexiblas-netlib64-3.4.1-2.fc40.ppc64le flexiblas-openblas-openmp-3.4.1-2.fc40.ppc64le flexiblas-openblas-openmp64-3.4.1-2.fc40.ppc64le fontconfig-2.15.0-1.fc40.ppc64le fonts-filesystem-1:2.0.5-12.fc39.noarch freeglut-3.4.0-4.fc39.ppc64le freeglut-devel-3.4.0-4.fc39.ppc64le freetype-2.13.2-1.fc40.ppc64le fribidi-1.0.13-2.fc39.ppc64le gc-8.2.2-4.fc39.ppc64le gcc-14.0.1-0.2.fc40.ppc64le gcc-c++-14.0.1-0.2.fc40.ppc64le gcc-plugin-annobin-14.0.1-0.2.fc40.ppc64le gd-2.3.3-12.fc39.ppc64le gdk-pixbuf2-2.42.10-6.fc40.ppc64le gl-manpages-1.1-29.20190306.fc40.noarch gl2ps-1.4.2-8.fc39.ppc64le glib2-2.79.0-6.fc40.ppc64le glibc-devel-2.38.9000-33.fc40.ppc64le glx-utils-9.0.0-4.fc40.ppc64le gnutls-3.8.2-2.fc40.ppc64le google-cpu_features-0.7.0-4.fc39.ppc64le google-cpu_features-devel-0.7.0-4.fc39.ppc64le google-droid-sans-fonts-20200215-17.fc40.noarch google-noto-fonts-common-20230801-4.fc40.noarch google-noto-sans-vf-fonts-20230801-4.fc40.noarch graphene-1.10.6-6.fc39.ppc64le graphite2-1.3.14-13.fc40.ppc64le graphviz-9.0.0-8.fc40.ppc64le groff-base-1.23.0-4.fc40.ppc64le gstreamer1-1.22.8-1.fc40.ppc64le gstreamer1-plugins-base-1.22.8-1.fc40.ppc64le gts-0.7.6-46.20121130.fc39.ppc64le guile22-2.2.7-9.fc39.ppc64le harfbuzz-8.3.0-2.fc40.ppc64le highway-1.0.7-1.fc40.ppc64le hyphen-2.8.8-21.fc39.ppc64le imath-3.1.9-5.fc40.ppc64le iso-codes-4.16.0-1.fc40.noarch jasper-libs-4.1.0-1.fc40.ppc64le jbig2dec-libs-0.20-1.fc40.ppc64le jbigkit-libs-2.1-27.fc40.ppc64le json-glib-1.8.0-1.fc40.ppc64le jsoncpp-1.9.5-5.fc39.ppc64le kernel-headers-6.8.0-0.rc1.12.fc40.ppc64le lasi-1.1.3-11.fc39.ppc64le lcms2-2.16-2.fc40.ppc64le libCombine-0.2.20-3.fc39.ppc64le libCombine-devel-0.2.20-3.fc39.ppc64le libICE-1.1.1-1.fc40.ppc64le libSM-1.2.4-1.fc40.ppc64le libX11-1.8.7-1.fc40.ppc64le libX11-common-1.8.7-1.fc40.noarch libX11-devel-1.8.7-1.fc40.ppc64le libX11-xcb-1.8.7-1.fc40.ppc64le libXau-1.0.11-4.fc40.ppc64le libXau-devel-1.0.11-4.fc40.ppc64le libXext-1.3.5-5.fc40.ppc64le libXfixes-6.0.1-1.fc40.ppc64le libXft-2.3.8-4.fc40.ppc64le libXi-1.8.1-3.fc40.ppc64le libXpm-3.5.17-1.fc40.ppc64le libXrender-0.9.11-4.fc40.ppc64le libXt-1.3.0-1.fc40.ppc64le libXv-1.0.12-1.fc40.ppc64le libXxf86vm-1.1.5-4.fc40.ppc64le libaom-3.8.0-1.fc40.ppc64le libappstream-glib-0.8.2-4.fc39.ppc64le libasan-14.0.1-0.2.fc40.ppc64le libatomic-14.0.1-0.2.fc40.ppc64le libavif-0.11.1-12.fc40.ppc64le libb2-0.98.1-9.fc39.ppc64le libcurl-devel-8.5.0-1.fc40.ppc64le libdatrie-0.2.13-7.fc39.ppc64le libdav1d-1.3.0-1.fc40.ppc64le libdrm-2.4.120-1.fc40.ppc64le libdrm-devel-2.4.120-1.fc40.ppc64le libevdev-1.13.1-2.fc39.ppc64le libgfortran-14.0.1-0.2.fc40.ppc64le libglvnd-1:1.7.0-1.fc40.ppc64le libglvnd-core-devel-1:1.7.0-1.fc40.ppc64le libglvnd-devel-1:1.7.0-1.fc40.ppc64le libglvnd-egl-1:1.7.0-1.fc40.ppc64le libglvnd-gles-1:1.7.0-1.fc40.ppc64le libglvnd-glx-1:1.7.0-1.fc40.ppc64le libglvnd-opengl-1:1.7.0-1.fc40.ppc64le libgpg-error-1.47-2.fc39.ppc64le libgpg-error-devel-1.47-2.fc39.ppc64le libgs-10.02.1-7.fc40.ppc64le libgudev-238-2.fc39.ppc64le libheif-1.17.5-2.fc40.ppc64le libicu-73.2-3.fc40.ppc64le libijs-0.35-20.fc40.ppc64le libimagequant-4.0.3-2.fc40.ppc64le libinput-1.25.0-1.fc40.ppc64le libjpeg-turbo-2.1.4-3.fc39.ppc64le libjxl-1:0.8.2-3.fc40.ppc64le liblerc-4.0.0-4.fc39.ppc64le liblqr-1-0.4.2-22.fc39.ppc64le libmml-qt5-2.4-18.20210516git7ad58fac.fc39.ppc64le libmml-qt5-devel-2.4-18.20210516git7ad58fac.fc39.ppc64le libmpc-1.3.1-3.fc39.ppc64le libnuml-1.1.4-13.fc40.ppc64le libnuml-devel-1.1.4-13.fc40.ppc64le libnuml-static-1.1.4-13.fc40.ppc64le libogg-2:1.3.5-6.fc39.ppc64le libpaper-1:2.1.1-1.fc39.ppc64le libpng-2:1.6.40-1.fc40.ppc64le libproxy-0.5.3-3.fc40.ppc64le libquadmath-14.0.1-0.2.fc40.ppc64le libraqm-0.8.0-5.fc39.ppc64le librsvg2-2.57.1-1.fc40.ppc64le libsbml-5.20.2-5.fc40.ppc64le libsbml-devel-5.20.2-5.fc40.ppc64le libsbw-2.12.2-13.fc39.ppc64le libsbw-devel-2.12.2-13.fc39.ppc64le libsedml-2:2.0.32-7.fc39.ppc64le libsedml-devel-2:2.0.32-7.fc39.ppc64le libstdc++-devel-14.0.1-0.2.fc40.ppc64le libstemmer-2.2.0-7.fc39.ppc64le libthai-0.1.29-6.fc39.ppc64le libtheora-1:1.1.1-34.fc39.ppc64le libtiff-4.5.0-3.fc40.ppc64le libtool-ltdl-2.4.7-9.fc40.ppc64le libubsan-14.0.1-0.2.fc40.ppc64le libunwind-1.7.2-1.fc40.ppc64le libuuid-devel-2.39.3-2.fc40.ppc64le libuv-1:1.47.0-3.fc40.ppc64le libvisual-1:0.4.1-2.fc39.ppc64le libvorbis-1:1.3.7-8.fc39.ppc64le libwacom-2.9.0-1.fc40.ppc64le libwacom-data-2.9.0-1.fc40.noarch libwayland-client-1.22.0-2.fc39.ppc64le libwayland-cursor-1.22.0-2.fc39.ppc64le libwayland-egl-1.22.0-2.fc39.ppc64le libwayland-server-1.22.0-2.fc39.ppc64le libwebp-1.3.2-2.fc40.ppc64le libwmf-lite-0.2.13-2.fc39.ppc64le libxcb-1.16-2.fc40.ppc64le libxcb-devel-1.16-2.fc40.ppc64le libxcrypt-devel-4.4.36-4.fc40.ppc64le libxkbcommon-1.6.0-1.fc40.ppc64le libxkbcommon-x11-1.6.0-1.fc40.ppc64le libxml2-devel-2.12.4-1.fc40.ppc64le libxshmfence-1.3.2-1.fc40.ppc64le libxslt-1.1.39-1.fc40.ppc64le libxslt-devel-1.1.39-1.fc40.ppc64le libzip-1.10.1-1.fc40.ppc64le m4-1.4.19-7.fc40.ppc64le make-1:4.4.1-2.fc39.ppc64le mesa-libEGL-24.0.0~rc2-2.fc40.ppc64le mesa-libEGL-devel-24.0.0~rc2-2.fc40.ppc64le mesa-libGL-24.0.0~rc2-2.fc40.ppc64le mesa-libGL-devel-24.0.0~rc2-2.fc40.ppc64le mesa-libGLU-9.0.3-1.fc39.ppc64le mesa-libGLU-devel-9.0.3-1.fc39.ppc64le mesa-libgbm-24.0.0~rc2-2.fc40.ppc64le mesa-libglapi-24.0.0~rc2-2.fc40.ppc64le minizip-ng-compat-3.0.10-5.fc40.ppc64le minizip-ng-compat-devel-3.0.10-5.fc40.ppc64le mpdecimal-2.5.1-7.fc39.ppc64le mtdev-1.1.6-6.fc39.ppc64le ncurses-6.4-9.20240113.fc40.ppc64le netpbm-11.02.00-5.fc40.ppc64le nettle-3.9.1-2.fc39.ppc64le nspr-4.35.0-17.fc40.ppc64le nss-3.96.1-1.fc40.ppc64le nss-softokn-3.96.1-1.fc40.ppc64le nss-softokn-freebl-3.96.1-1.fc40.ppc64le nss-sysinit-3.96.1-1.fc40.ppc64le nss-util-3.96.1-1.fc40.ppc64le openblas-0.3.26-1.fc40.ppc64le openblas-openmp-0.3.26-1.fc40.ppc64le openblas-openmp64-0.3.26-1.fc40.ppc64le openexr-libs-3.1.10-3.fc40.ppc64le openjpeg2-2.5.0-5.fc40.ppc64le opus-1.4-1.fc40.ppc64le orc-0.4.33-3.fc39.ppc64le pango-1.51.0-1.fc40.ppc64le pcre2-utf16-10.42-2.fc40.ppc64le perl-AutoLoader-5.74-504.fc40.noarch perl-B-1.88-504.fc40.ppc64le perl-Carp-1.54-500.fc39.noarch perl-Class-Struct-0.68-504.fc40.noarch perl-Data-Dumper-2.188-501.fc39.ppc64le perl-Digest-1.20-500.fc39.noarch perl-Digest-MD5-2.59-1.fc40.ppc64le perl-DynaLoader-1.54-504.fc40.ppc64le perl-Encode-4:3.20-501.fc40.ppc64le perl-English-1.11-504.fc40.noarch perl-Errno-1.37-504.fc40.ppc64le perl-Exporter-5.78-1.fc40.noarch perl-Fcntl-1.15-504.fc40.ppc64le perl-File-Basename-2.86-504.fc40.noarch perl-File-Find-1.43-504.fc40.noarch perl-File-Path-2.18-501.fc40.noarch perl-File-Temp-1:0.231.100-501.fc40.noarch perl-File-stat-1.13-504.fc40.noarch perl-FileHandle-2.05-504.fc40.noarch perl-Getopt-Long-1:2.57-1.fc40.noarch perl-Getopt-Std-1.13-504.fc40.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-IO-1.52-504.fc40.ppc64le perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.084-1.fc40.noarch perl-IPC-Open3-1.22-504.fc40.noarch perl-MIME-Base64-3.16-501.fc40.ppc64le perl-Mozilla-CA-20231213-1.fc40.noarch perl-Net-SSLeay-1.94-1.fc40.ppc64le perl-POSIX-2.13-504.fc40.ppc64le perl-PathTools-3.89-500.fc39.ppc64le perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.ppc64le perl-SelectSaver-1.02-504.fc40.noarch perl-Socket-4:2.037-3.fc39.ppc64le perl-Storable-1:3.32-500.fc39.ppc64le perl-Symbol-1.09-504.fc40.noarch perl-Term-ANSIColor-5.01-502.fc40.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-base-2.27-504.fc40.noarch perl-constant-1.33-501.fc39.noarch perl-if-0.61.000-504.fc40.noarch perl-interpreter-4:5.38.2-504.fc40.ppc64le perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.2-504.fc40.ppc64le perl-locale-1.10-504.fc40.noarch perl-mro-1.28-504.fc40.ppc64le perl-overload-1.37-504.fc40.noarch perl-overloading-0.02-504.fc40.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-vars-1.05-504.fc40.noarch pixman-0.43.0-1.fc40.ppc64le poppler-23.08.0-2.fc40.ppc64le poppler-data-0.4.11-5.fc39.noarch poppler-glib-23.08.0-2.fc40.ppc64le pyproject-rpm-macros-1.11.0-1.fc40.noarch python-pip-wheel-23.3.1-3.fc40.noarch python-rpm-macros-3.12-5.fc40.noarch python3-3.12.1-2.fc40.ppc64le python3-devel-3.12.1-2.fc40.ppc64le python3-libs-3.12.1-2.fc40.ppc64le python3-packaging-23.2-2.fc40.noarch python3-rpm-generators-14-8.fc40.noarch python3-rpm-macros-3.12-5.fc40.noarch python3-setuptools-68.2.2-1.fc40.noarch qcustomplot-qt5-2.1.1-7.fc40.ppc64le qcustomplot-qt5-devel-2.1.1-7.fc40.ppc64le qt-settings-39.1-3.fc40.noarch qt5-qtbase-5.15.12-1.fc40.ppc64le qt5-qtbase-common-5.15.12-1.fc40.noarch qt5-qtbase-devel-5.15.12-1.fc40.ppc64le qt5-qtbase-gui-5.15.12-1.fc40.ppc64le qt5-qtdatavis3d-5.15.12-2.fc40.ppc64le qt5-qtdatavis3d-devel-5.15.12-2.fc40.ppc64le qt5-qtdeclarative-5.15.12-1.fc40.ppc64le qt5-qtdeclarative-devel-5.15.12-1.fc40.ppc64le qt5-qtlocation-5.15.12-1.fc40.ppc64le qt5-qtsensors-5.15.12-2.fc40.ppc64le qt5-qtsvg-5.15.12-1.fc40.ppc64le qt5-qtsvg-devel-5.15.12-1.fc40.ppc64le qt5-qtwebchannel-5.15.12-2.fc40.ppc64le qt5-qtwebkit-5.212.0-0.80alpha4.fc40.ppc64le qt5-qtwebkit-devel-5.212.0-0.80alpha4.fc40.ppc64le qt5-rpm-macros-5.15.12-1.fc40.noarch qwt-qt5-6.2.0-3.fc39.ppc64le qwt-qt5-devel-6.2.0-3.fc39.ppc64le qwtplot3d-qt5-1:0.3.0-5.20210828gitb265574.fc39.ppc64le qwtplot3d-qt5-devel-1:0.3.0-5.20210828gitb265574.fc39.ppc64le raptor-1.4.21-41.fc39.ppc64le raptor-devel-1.4.21-41.fc39.ppc64le rav1e-libs-0.6.6-4.fc40.ppc64le rhash-1.4.3-3.fc39.ppc64le rsvg-pixbuf-loader-2.57.1-1.fc40.ppc64le shared-mime-info-2.3-2.fc40.ppc64le svt-av1-libs-1.4.1-3.fc39.ppc64le swig-4.1.1-15.fc40.ppc64le tzdata-2023d-2.fc40.noarch urw-base35-bookman-fonts-20200910-18.fc39.noarch urw-base35-c059-fonts-20200910-18.fc39.noarch urw-base35-d050000l-fonts-20200910-18.fc39.noarch urw-base35-fonts-20200910-18.fc39.noarch urw-base35-fonts-common-20200910-18.fc39.noarch urw-base35-gothic-fonts-20200910-18.fc39.noarch urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch urw-base35-p052-fonts-20200910-18.fc39.noarch urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch vim-filesystem-2:9.1.031-1.fc40.noarch vulkan-headers-1.3.268.0-1.fc40.noarch vulkan-loader-1.3.268.0-1.fc40.ppc64le vulkan-loader-devel-1.3.268.0-1.fc40.ppc64le woff2-1.0.2-18.fc39.ppc64le xcb-util-0.4.1-3.fc39.ppc64le xcb-util-image-0.4.1-3.fc39.ppc64le xcb-util-keysyms-0.4.1-3.fc39.ppc64le xcb-util-renderutil-0.3.10-3.fc39.ppc64le xcb-util-wm-0.4.2-3.fc39.ppc64le xkeyboard-config-2.40-2.fc40.noarch xml-common-0.6.3-62.fc40.noarch xorg-x11-proto-devel-2023.2-3.fc40.noarch xz-devel-5.4.5-1.fc40.ppc64le zipper-1.0.3-6.fc39.ppc64le zipper-devel-1.0.3-6.fc39.ppc64le zlib-ng-compat-devel-2.1.6-1.fc40.ppc64le Complete! Finish: build setup for COPASI-4.42.284-5.fc40.src.rpm Start: rpmbuild COPASI-4.42.284-5.fc40.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1705881600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.9FANgd + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf COPASI-Build-284 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/COPASI-Build-284.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd COPASI-Build-284 + rm -rf /builddir/build/BUILD/COPASI-Build-284-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/COPASI-Build-284-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -f license.txt ++ find copasi -type f '(' -name '*.cpp' ')' + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/UnsupportedAnnotationHandler.cpp.new copasi/xml/parser/UnsupportedAnnotationHandler.cpp + touch -r copasi/xml/parser/UnsupportedAnnotationHandler.cpp copasi/xml/parser/UnsupportedAnnotationHandler.cpp.new + mv copasi/xml/parser/UnsupportedAnnotationHandler.cpp.new copasi/xml/parser/UnsupportedAnnotationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/UnitDefinitionHandler.cpp.new copasi/xml/parser/UnitDefinitionHandler.cpp + touch -r copasi/xml/parser/UnitDefinitionHandler.cpp copasi/xml/parser/UnitDefinitionHandler.cpp.new + mv copasi/xml/parser/UnitDefinitionHandler.cpp.new copasi/xml/parser/UnitDefinitionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/UNKNOWNHandler.cpp.new copasi/xml/parser/UNKNOWNHandler.cpp + touch -r copasi/xml/parser/UNKNOWNHandler.cpp copasi/xml/parser/UNKNOWNHandler.cpp.new + mv copasi/xml/parser/UNKNOWNHandler.cpp.new copasi/xml/parser/UNKNOWNHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/TextGlyphHandler.cpp.new copasi/xml/parser/TextGlyphHandler.cpp + touch -r copasi/xml/parser/TextGlyphHandler.cpp copasi/xml/parser/TextGlyphHandler.cpp.new + mv copasi/xml/parser/TextGlyphHandler.cpp.new copasi/xml/parser/TextGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/TaskHandler.cpp.new copasi/xml/parser/TaskHandler.cpp + touch -r copasi/xml/parser/TaskHandler.cpp copasi/xml/parser/TaskHandler.cpp.new + mv copasi/xml/parser/TaskHandler.cpp.new copasi/xml/parser/TaskHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/TableHandler.cpp.new copasi/xml/parser/TableHandler.cpp + touch -r copasi/xml/parser/TableHandler.cpp copasi/xml/parser/TableHandler.cpp.new + mv copasi/xml/parser/TableHandler.cpp.new copasi/xml/parser/TableHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SubstrateHandler.cpp.new copasi/xml/parser/SubstrateHandler.cpp + touch -r copasi/xml/parser/SubstrateHandler.cpp copasi/xml/parser/SubstrateHandler.cpp.new + mv copasi/xml/parser/SubstrateHandler.cpp.new copasi/xml/parser/SubstrateHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/StyleHandler.cpp.new copasi/xml/parser/StyleHandler.cpp + touch -r copasi/xml/parser/StyleHandler.cpp copasi/xml/parser/StyleHandler.cpp.new + mv copasi/xml/parser/StyleHandler.cpp.new copasi/xml/parser/StyleHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/StateTemplateVariableHandler.cpp.new copasi/xml/parser/StateTemplateVariableHandler.cpp + touch -r copasi/xml/parser/StateTemplateVariableHandler.cpp copasi/xml/parser/StateTemplateVariableHandler.cpp.new + mv copasi/xml/parser/StateTemplateVariableHandler.cpp.new copasi/xml/parser/StateTemplateVariableHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/StateTemplateHandler.cpp.new copasi/xml/parser/StateTemplateHandler.cpp + touch -r copasi/xml/parser/StateTemplateHandler.cpp copasi/xml/parser/StateTemplateHandler.cpp.new + mv copasi/xml/parser/StateTemplateHandler.cpp.new copasi/xml/parser/StateTemplateHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SourceParameterHandler.cpp.new copasi/xml/parser/SourceParameterHandler.cpp + touch -r copasi/xml/parser/SourceParameterHandler.cpp copasi/xml/parser/SourceParameterHandler.cpp.new + mv copasi/xml/parser/SourceParameterHandler.cpp.new copasi/xml/parser/SourceParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SliderHandler.cpp.new copasi/xml/parser/SliderHandler.cpp + touch -r copasi/xml/parser/SliderHandler.cpp copasi/xml/parser/SliderHandler.cpp.new + mv copasi/xml/parser/SliderHandler.cpp.new copasi/xml/parser/SliderHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/SBMLMapHandler.cpp.new copasi/xml/parser/SBMLMapHandler.cpp + touch -r copasi/xml/parser/SBMLMapHandler.cpp copasi/xml/parser/SBMLMapHandler.cpp.new + mv copasi/xml/parser/SBMLMapHandler.cpp.new copasi/xml/parser/SBMLMapHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReportTargetHandler.cpp.new copasi/xml/parser/ReportTargetHandler.cpp + touch -r copasi/xml/parser/ReportTargetHandler.cpp copasi/xml/parser/ReportTargetHandler.cpp.new + mv copasi/xml/parser/ReportTargetHandler.cpp.new copasi/xml/parser/ReportTargetHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReportSectionHandler.cpp.new copasi/xml/parser/ReportSectionHandler.cpp + touch -r copasi/xml/parser/ReportSectionHandler.cpp copasi/xml/parser/ReportSectionHandler.cpp.new + mv copasi/xml/parser/ReportSectionHandler.cpp.new copasi/xml/parser/ReportSectionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReportDefinitionHandler.cpp.new copasi/xml/parser/ReportDefinitionHandler.cpp + touch -r copasi/xml/parser/ReportDefinitionHandler.cpp copasi/xml/parser/ReportDefinitionHandler.cpp.new + mv copasi/xml/parser/ReportDefinitionHandler.cpp.new copasi/xml/parser/ReportDefinitionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderTextHandler.cpp.new copasi/xml/parser/RenderTextHandler.cpp + touch -r copasi/xml/parser/RenderTextHandler.cpp copasi/xml/parser/RenderTextHandler.cpp.new + mv copasi/xml/parser/RenderTextHandler.cpp.new copasi/xml/parser/RenderTextHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderInformationHandler.cpp.new copasi/xml/parser/RenderInformationHandler.cpp + touch -r copasi/xml/parser/RenderInformationHandler.cpp copasi/xml/parser/RenderInformationHandler.cpp.new + mv copasi/xml/parser/RenderInformationHandler.cpp.new copasi/xml/parser/RenderInformationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderCurveHandler.cpp.new copasi/xml/parser/RenderCurveHandler.cpp + touch -r copasi/xml/parser/RenderCurveHandler.cpp copasi/xml/parser/RenderCurveHandler.cpp.new + mv copasi/xml/parser/RenderCurveHandler.cpp.new copasi/xml/parser/RenderCurveHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RenderCurveElementHandler.cpp.new copasi/xml/parser/RenderCurveElementHandler.cpp + touch -r copasi/xml/parser/RenderCurveElementHandler.cpp copasi/xml/parser/RenderCurveElementHandler.cpp.new + mv copasi/xml/parser/RenderCurveElementHandler.cpp.new copasi/xml/parser/RenderCurveElementHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RectangleHandler.cpp.new copasi/xml/parser/RectangleHandler.cpp + touch -r copasi/xml/parser/RectangleHandler.cpp copasi/xml/parser/RectangleHandler.cpp.new + mv copasi/xml/parser/RectangleHandler.cpp.new copasi/xml/parser/RectangleHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReactionHandler.cpp.new copasi/xml/parser/ReactionHandler.cpp + touch -r copasi/xml/parser/ReactionHandler.cpp copasi/xml/parser/ReactionHandler.cpp.new + mv copasi/xml/parser/ReactionHandler.cpp.new copasi/xml/parser/ReactionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ReactionGlyphHandler.cpp.new copasi/xml/parser/ReactionGlyphHandler.cpp + touch -r copasi/xml/parser/ReactionGlyphHandler.cpp copasi/xml/parser/ReactionGlyphHandler.cpp.new + mv copasi/xml/parser/ReactionGlyphHandler.cpp.new copasi/xml/parser/ReactionGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/RadialGradientHandler.cpp.new copasi/xml/parser/RadialGradientHandler.cpp + touch -r copasi/xml/parser/RadialGradientHandler.cpp copasi/xml/parser/RadialGradientHandler.cpp.new + mv copasi/xml/parser/RadialGradientHandler.cpp.new copasi/xml/parser/RadialGradientHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ProductHandler.cpp.new copasi/xml/parser/ProductHandler.cpp + touch -r copasi/xml/parser/ProductHandler.cpp copasi/xml/parser/ProductHandler.cpp.new + mv copasi/xml/parser/ProductHandler.cpp.new copasi/xml/parser/ProductHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PolygonHandler.cpp.new copasi/xml/parser/PolygonHandler.cpp + touch -r copasi/xml/parser/PolygonHandler.cpp copasi/xml/parser/PolygonHandler.cpp.new + mv copasi/xml/parser/PolygonHandler.cpp.new copasi/xml/parser/PolygonHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PointHandler.cpp.new copasi/xml/parser/PointHandler.cpp + touch -r copasi/xml/parser/PointHandler.cpp copasi/xml/parser/PointHandler.cpp.new + mv copasi/xml/parser/PointHandler.cpp.new copasi/xml/parser/PointHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PlotSpecificationHandler.cpp.new copasi/xml/parser/PlotSpecificationHandler.cpp + touch -r copasi/xml/parser/PlotSpecificationHandler.cpp copasi/xml/parser/PlotSpecificationHandler.cpp.new + mv copasi/xml/parser/PlotSpecificationHandler.cpp.new copasi/xml/parser/PlotSpecificationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/PlotItemHandler.cpp.new copasi/xml/parser/PlotItemHandler.cpp + touch -r copasi/xml/parser/PlotItemHandler.cpp copasi/xml/parser/PlotItemHandler.cpp.new + mv copasi/xml/parser/PlotItemHandler.cpp.new copasi/xml/parser/PlotItemHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterTextHandler.cpp.new copasi/xml/parser/ParameterTextHandler.cpp + touch -r copasi/xml/parser/ParameterTextHandler.cpp copasi/xml/parser/ParameterTextHandler.cpp.new + mv copasi/xml/parser/ParameterTextHandler.cpp.new copasi/xml/parser/ParameterTextHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterHandler.cpp.new copasi/xml/parser/ParameterHandler.cpp + touch -r copasi/xml/parser/ParameterHandler.cpp copasi/xml/parser/ParameterHandler.cpp.new + mv copasi/xml/parser/ParameterHandler.cpp.new copasi/xml/parser/ParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterGroupHandler.cpp.new copasi/xml/parser/ParameterGroupHandler.cpp + touch -r copasi/xml/parser/ParameterGroupHandler.cpp copasi/xml/parser/ParameterGroupHandler.cpp.new + mv copasi/xml/parser/ParameterGroupHandler.cpp.new copasi/xml/parser/ParameterGroupHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ParameterDescriptionHandler.cpp.new copasi/xml/parser/ParameterDescriptionHandler.cpp + touch -r copasi/xml/parser/ParameterDescriptionHandler.cpp copasi/xml/parser/ParameterDescriptionHandler.cpp.new + mv copasi/xml/parser/ParameterDescriptionHandler.cpp.new copasi/xml/parser/ParameterDescriptionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ObjectHandler.cpp.new copasi/xml/parser/ObjectHandler.cpp + touch -r copasi/xml/parser/ObjectHandler.cpp copasi/xml/parser/ObjectHandler.cpp.new + mv copasi/xml/parser/ObjectHandler.cpp.new copasi/xml/parser/ObjectHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModifierHandler.cpp.new copasi/xml/parser/ModifierHandler.cpp + touch -r copasi/xml/parser/ModifierHandler.cpp copasi/xml/parser/ModifierHandler.cpp.new + mv copasi/xml/parser/ModifierHandler.cpp.new copasi/xml/parser/ModifierHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelValueHandler.cpp.new copasi/xml/parser/ModelValueHandler.cpp + touch -r copasi/xml/parser/ModelValueHandler.cpp copasi/xml/parser/ModelValueHandler.cpp.new + mv copasi/xml/parser/ModelValueHandler.cpp.new copasi/xml/parser/ModelValueHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelParameterSetHandler.cpp.new copasi/xml/parser/ModelParameterSetHandler.cpp + touch -r copasi/xml/parser/ModelParameterSetHandler.cpp copasi/xml/parser/ModelParameterSetHandler.cpp.new + mv copasi/xml/parser/ModelParameterSetHandler.cpp.new copasi/xml/parser/ModelParameterSetHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelParameterHandler.cpp.new copasi/xml/parser/ModelParameterHandler.cpp + touch -r copasi/xml/parser/ModelParameterHandler.cpp copasi/xml/parser/ModelParameterHandler.cpp.new + mv copasi/xml/parser/ModelParameterHandler.cpp.new copasi/xml/parser/ModelParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelParameterGroupHandler.cpp.new copasi/xml/parser/ModelParameterGroupHandler.cpp + touch -r copasi/xml/parser/ModelParameterGroupHandler.cpp copasi/xml/parser/ModelParameterGroupHandler.cpp.new + mv copasi/xml/parser/ModelParameterGroupHandler.cpp.new copasi/xml/parser/ModelParameterGroupHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ModelHandler.cpp.new copasi/xml/parser/ModelHandler.cpp + touch -r copasi/xml/parser/ModelHandler.cpp copasi/xml/parser/ModelHandler.cpp.new + mv copasi/xml/parser/ModelHandler.cpp.new copasi/xml/parser/ModelHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MiriamAnnotationHandler.cpp.new copasi/xml/parser/MiriamAnnotationHandler.cpp + touch -r copasi/xml/parser/MiriamAnnotationHandler.cpp copasi/xml/parser/MiriamAnnotationHandler.cpp.new + mv copasi/xml/parser/MiriamAnnotationHandler.cpp.new copasi/xml/parser/MiriamAnnotationHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MethodHandler.cpp.new copasi/xml/parser/MethodHandler.cpp + touch -r copasi/xml/parser/MethodHandler.cpp copasi/xml/parser/MethodHandler.cpp.new + mv copasi/xml/parser/MethodHandler.cpp.new copasi/xml/parser/MethodHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp.new copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp + touch -r copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp.new + mv copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp.new copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MetaboliteHandler.cpp.new copasi/xml/parser/MetaboliteHandler.cpp + touch -r copasi/xml/parser/MetaboliteHandler.cpp copasi/xml/parser/MetaboliteHandler.cpp.new + mv copasi/xml/parser/MetaboliteHandler.cpp.new copasi/xml/parser/MetaboliteHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MetaboliteGlyphHandler.cpp.new copasi/xml/parser/MetaboliteGlyphHandler.cpp + touch -r copasi/xml/parser/MetaboliteGlyphHandler.cpp copasi/xml/parser/MetaboliteGlyphHandler.cpp.new + mv copasi/xml/parser/MetaboliteGlyphHandler.cpp.new copasi/xml/parser/MetaboliteGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/MathMLHandler.cpp.new copasi/xml/parser/MathMLHandler.cpp + touch -r copasi/xml/parser/MathMLHandler.cpp copasi/xml/parser/MathMLHandler.cpp.new + mv copasi/xml/parser/MathMLHandler.cpp.new copasi/xml/parser/MathMLHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfLayoutsHandler.cpp.new copasi/xml/parser/ListOfLayoutsHandler.cpp + touch -r copasi/xml/parser/ListOfLayoutsHandler.cpp copasi/xml/parser/ListOfLayoutsHandler.cpp.new + mv copasi/xml/parser/ListOfLayoutsHandler.cpp.new copasi/xml/parser/ListOfLayoutsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfHandler.cpp.new copasi/xml/parser/ListOfHandler.cpp + touch -r copasi/xml/parser/ListOfHandler.cpp copasi/xml/parser/ListOfHandler.cpp.new + mv copasi/xml/parser/ListOfHandler.cpp.new copasi/xml/parser/ListOfHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp.new copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp + touch -r copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp.new + mv copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp.new copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ListOfCurveSegmentsHandler.cpp.new copasi/xml/parser/ListOfCurveSegmentsHandler.cpp + touch -r copasi/xml/parser/ListOfCurveSegmentsHandler.cpp copasi/xml/parser/ListOfCurveSegmentsHandler.cpp.new + mv copasi/xml/parser/ListOfCurveSegmentsHandler.cpp.new copasi/xml/parser/ListOfCurveSegmentsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LinearGradientHandler.cpp.new copasi/xml/parser/LinearGradientHandler.cpp + touch -r copasi/xml/parser/LinearGradientHandler.cpp copasi/xml/parser/LinearGradientHandler.cpp.new + mv copasi/xml/parser/LinearGradientHandler.cpp.new copasi/xml/parser/LinearGradientHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LineSegmentHandler.cpp.new copasi/xml/parser/LineSegmentHandler.cpp + touch -r copasi/xml/parser/LineSegmentHandler.cpp copasi/xml/parser/LineSegmentHandler.cpp.new + mv copasi/xml/parser/LineSegmentHandler.cpp.new copasi/xml/parser/LineSegmentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LineEndingHandler.cpp.new copasi/xml/parser/LineEndingHandler.cpp + touch -r copasi/xml/parser/LineEndingHandler.cpp copasi/xml/parser/LineEndingHandler.cpp.new + mv copasi/xml/parser/LineEndingHandler.cpp.new copasi/xml/parser/LineEndingHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/LayoutHandler.cpp.new copasi/xml/parser/LayoutHandler.cpp + touch -r copasi/xml/parser/LayoutHandler.cpp copasi/xml/parser/LayoutHandler.cpp.new + mv copasi/xml/parser/LayoutHandler.cpp.new copasi/xml/parser/LayoutHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/KineticLawHandler.cpp.new copasi/xml/parser/KineticLawHandler.cpp + touch -r copasi/xml/parser/KineticLawHandler.cpp copasi/xml/parser/KineticLawHandler.cpp.new + mv copasi/xml/parser/KineticLawHandler.cpp.new copasi/xml/parser/KineticLawHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/InitialStateHandler.cpp.new copasi/xml/parser/InitialStateHandler.cpp + touch -r copasi/xml/parser/InitialStateHandler.cpp copasi/xml/parser/InitialStateHandler.cpp.new + mv copasi/xml/parser/InitialStateHandler.cpp.new copasi/xml/parser/InitialStateHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ImageHandler.cpp.new copasi/xml/parser/ImageHandler.cpp + touch -r copasi/xml/parser/ImageHandler.cpp copasi/xml/parser/ImageHandler.cpp.new + mv copasi/xml/parser/ImageHandler.cpp.new copasi/xml/parser/ImageHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/GroupHandler.cpp.new copasi/xml/parser/GroupHandler.cpp + touch -r copasi/xml/parser/GroupHandler.cpp copasi/xml/parser/GroupHandler.cpp.new + mv copasi/xml/parser/GroupHandler.cpp.new copasi/xml/parser/GroupHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/GradientStopHandler.cpp.new copasi/xml/parser/GradientStopHandler.cpp + touch -r copasi/xml/parser/GradientStopHandler.cpp copasi/xml/parser/GradientStopHandler.cpp.new + mv copasi/xml/parser/GradientStopHandler.cpp.new copasi/xml/parser/GradientStopHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/GUIHandler.cpp.new copasi/xml/parser/GUIHandler.cpp + touch -r copasi/xml/parser/GUIHandler.cpp copasi/xml/parser/GUIHandler.cpp.new + mv copasi/xml/parser/GUIHandler.cpp.new copasi/xml/parser/GUIHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/FunctionHandler.cpp.new copasi/xml/parser/FunctionHandler.cpp + touch -r copasi/xml/parser/FunctionHandler.cpp copasi/xml/parser/FunctionHandler.cpp.new + mv copasi/xml/parser/FunctionHandler.cpp.new copasi/xml/parser/FunctionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/EventHandler.cpp.new copasi/xml/parser/EventHandler.cpp + touch -r copasi/xml/parser/EventHandler.cpp copasi/xml/parser/EventHandler.cpp.new + mv copasi/xml/parser/EventHandler.cpp.new copasi/xml/parser/EventHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/EllipseHandler.cpp.new copasi/xml/parser/EllipseHandler.cpp + touch -r copasi/xml/parser/EllipseHandler.cpp copasi/xml/parser/EllipseHandler.cpp.new + mv copasi/xml/parser/EllipseHandler.cpp.new copasi/xml/parser/EllipseHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/DimensionsHandler.cpp.new copasi/xml/parser/DimensionsHandler.cpp + touch -r copasi/xml/parser/DimensionsHandler.cpp copasi/xml/parser/DimensionsHandler.cpp.new + mv copasi/xml/parser/DimensionsHandler.cpp.new copasi/xml/parser/DimensionsHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CurveHandler.cpp.new copasi/xml/parser/CurveHandler.cpp + touch -r copasi/xml/parser/CurveHandler.cpp copasi/xml/parser/CurveHandler.cpp.new + mv copasi/xml/parser/CurveHandler.cpp.new copasi/xml/parser/CurveHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CubicBezierHandler.cpp.new copasi/xml/parser/CubicBezierHandler.cpp + touch -r copasi/xml/parser/CubicBezierHandler.cpp copasi/xml/parser/CubicBezierHandler.cpp.new + mv copasi/xml/parser/CubicBezierHandler.cpp.new copasi/xml/parser/CubicBezierHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ConstantHandler.cpp.new copasi/xml/parser/ConstantHandler.cpp + touch -r copasi/xml/parser/ConstantHandler.cpp copasi/xml/parser/ConstantHandler.cpp.new + mv copasi/xml/parser/ConstantHandler.cpp.new copasi/xml/parser/ConstantHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CompartmentHandler.cpp.new copasi/xml/parser/CompartmentHandler.cpp + touch -r copasi/xml/parser/CompartmentHandler.cpp copasi/xml/parser/CompartmentHandler.cpp.new + mv copasi/xml/parser/CompartmentHandler.cpp.new copasi/xml/parser/CompartmentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CompartmentGlyphHandler.cpp.new copasi/xml/parser/CompartmentGlyphHandler.cpp + touch -r copasi/xml/parser/CompartmentGlyphHandler.cpp copasi/xml/parser/CompartmentGlyphHandler.cpp.new + mv copasi/xml/parser/CompartmentGlyphHandler.cpp.new copasi/xml/parser/CompartmentGlyphHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CommentHandler.cpp.new copasi/xml/parser/CommentHandler.cpp + touch -r copasi/xml/parser/CommentHandler.cpp copasi/xml/parser/CommentHandler.cpp.new + mv copasi/xml/parser/CommentHandler.cpp.new copasi/xml/parser/CommentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ColorDefinitionHandler.cpp.new copasi/xml/parser/ColorDefinitionHandler.cpp + touch -r copasi/xml/parser/ColorDefinitionHandler.cpp copasi/xml/parser/ColorDefinitionHandler.cpp.new + mv copasi/xml/parser/ColorDefinitionHandler.cpp.new copasi/xml/parser/ColorDefinitionHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CharacterDataHandler.cpp.new copasi/xml/parser/CharacterDataHandler.cpp + touch -r copasi/xml/parser/CharacterDataHandler.cpp copasi/xml/parser/CharacterDataHandler.cpp.new + mv copasi/xml/parser/CharacterDataHandler.cpp.new copasi/xml/parser/CharacterDataHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/ChannelSpecHandler.cpp.new copasi/xml/parser/ChannelSpecHandler.cpp + touch -r copasi/xml/parser/ChannelSpecHandler.cpp copasi/xml/parser/ChannelSpecHandler.cpp.new + mv copasi/xml/parser/ChannelSpecHandler.cpp.new copasi/xml/parser/ChannelSpecHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CallParameterHandler.cpp.new copasi/xml/parser/CallParameterHandler.cpp + touch -r copasi/xml/parser/CallParameterHandler.cpp copasi/xml/parser/CallParameterHandler.cpp.new + mv copasi/xml/parser/CallParameterHandler.cpp.new copasi/xml/parser/CallParameterHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLParserData.cpp.new copasi/xml/parser/CXMLParserData.cpp + touch -r copasi/xml/parser/CXMLParserData.cpp copasi/xml/parser/CXMLParserData.cpp.new + mv copasi/xml/parser/CXMLParserData.cpp.new copasi/xml/parser/CXMLParserData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLParser.cpp.new copasi/xml/parser/CXMLParser.cpp + touch -r copasi/xml/parser/CXMLParser.cpp copasi/xml/parser/CXMLParser.cpp.new + mv copasi/xml/parser/CXMLParser.cpp.new copasi/xml/parser/CXMLParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLHandlerFactory.cpp.new copasi/xml/parser/CXMLHandlerFactory.cpp + touch -r copasi/xml/parser/CXMLHandlerFactory.cpp copasi/xml/parser/CXMLHandlerFactory.cpp.new + mv copasi/xml/parser/CXMLHandlerFactory.cpp.new copasi/xml/parser/CXMLHandlerFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/CXMLHandler.cpp.new copasi/xml/parser/CXMLHandler.cpp + touch -r copasi/xml/parser/CXMLHandler.cpp copasi/xml/parser/CXMLHandler.cpp.new + mv copasi/xml/parser/CXMLHandler.cpp.new copasi/xml/parser/CXMLHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/COPASIHandler.cpp.new copasi/xml/parser/COPASIHandler.cpp + touch -r copasi/xml/parser/COPASIHandler.cpp copasi/xml/parser/COPASIHandler.cpp.new + mv copasi/xml/parser/COPASIHandler.cpp.new copasi/xml/parser/COPASIHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/BoundingBoxHandler.cpp.new copasi/xml/parser/BoundingBoxHandler.cpp + touch -r copasi/xml/parser/BoundingBoxHandler.cpp copasi/xml/parser/BoundingBoxHandler.cpp.new + mv copasi/xml/parser/BoundingBoxHandler.cpp.new copasi/xml/parser/BoundingBoxHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/AssignmentHandler.cpp.new copasi/xml/parser/AssignmentHandler.cpp + touch -r copasi/xml/parser/AssignmentHandler.cpp copasi/xml/parser/AssignmentHandler.cpp.new + mv copasi/xml/parser/AssignmentHandler.cpp.new copasi/xml/parser/AssignmentHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp.new copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp + touch -r copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp.new + mv copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp.new copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CFixLocalReactionParameters.cpp.new copasi/xml/CFixLocalReactionParameters.cpp + touch -r copasi/xml/CFixLocalReactionParameters.cpp copasi/xml/CFixLocalReactionParameters.cpp.new + mv copasi/xml/CFixLocalReactionParameters.cpp.new copasi/xml/CFixLocalReactionParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CExpat.cpp.new copasi/xml/CExpat.cpp + touch -r copasi/xml/CExpat.cpp copasi/xml/CExpat.cpp.new + mv copasi/xml/CExpat.cpp.new copasi/xml/CExpat.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CCopasiXMLInterface.cpp.new copasi/xml/CCopasiXMLInterface.cpp + touch -r copasi/xml/CCopasiXMLInterface.cpp copasi/xml/CCopasiXMLInterface.cpp.new + mv copasi/xml/CCopasiXMLInterface.cpp.new copasi/xml/CCopasiXMLInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/xml/CCopasiXML.cpp.new copasi/xml/CCopasiXML.cpp + touch -r copasi/xml/CCopasiXML.cpp copasi/xml/CCopasiXML.cpp.new + mv copasi/xml/CCopasiXML.cpp.new copasi/xml/CCopasiXML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/wizard/wizard.cpp.new copasi/wizard/wizard.cpp + touch -r copasi/wizard/wizard.cpp copasi/wizard/wizard.cpp.new + mv copasi/wizard/wizard.cpp.new copasi/wizard/wizard.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioningUI/CQModelVersionHierarchyDM.cpp.new copasi/versioningUI/CQModelVersionHierarchyDM.cpp + touch -r copasi/versioningUI/CQModelVersionHierarchyDM.cpp copasi/versioningUI/CQModelVersionHierarchyDM.cpp.new + mv copasi/versioningUI/CQModelVersionHierarchyDM.cpp.new copasi/versioningUI/CQModelVersionHierarchyDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioningUI/CCreateModelVersionDialog.cpp.new copasi/versioningUI/CCreateModelVersionDialog.cpp + touch -r copasi/versioningUI/CCreateModelVersionDialog.cpp copasi/versioningUI/CCreateModelVersionDialog.cpp.new + mv copasi/versioningUI/CCreateModelVersionDialog.cpp.new copasi/versioningUI/CCreateModelVersionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioningUI/CBrowseModelVersionDialog.cpp.new copasi/versioningUI/CBrowseModelVersionDialog.cpp + touch -r copasi/versioningUI/CBrowseModelVersionDialog.cpp copasi/versioningUI/CBrowseModelVersionDialog.cpp.new + mv copasi/versioningUI/CBrowseModelVersionDialog.cpp.new copasi/versioningUI/CBrowseModelVersionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioning/CVCard.cpp.new copasi/versioning/CVCard.cpp + touch -r copasi/versioning/CVCard.cpp copasi/versioning/CVCard.cpp.new + mv copasi/versioning/CVCard.cpp.new copasi/versioning/CVCard.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioning/CModelVersionHierarchy.cpp.new copasi/versioning/CModelVersionHierarchy.cpp + touch -r copasi/versioning/CModelVersionHierarchy.cpp copasi/versioning/CModelVersionHierarchy.cpp.new + mv copasi/versioning/CModelVersionHierarchy.cpp.new copasi/versioning/CModelVersionHierarchy.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/versioning/CModelVersion.cpp.new copasi/versioning/CModelVersion.cpp + touch -r copasi/versioning/CModelVersion.cpp copasi/versioning/CModelVersion.cpp.new + mv copasi/versioning/CModelVersion.cpp.new copasi/versioning/CModelVersion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/utility.cpp.new copasi/utilities/utility.cpp + touch -r copasi/utilities/utility.cpp copasi/utilities/utility.cpp.new + mv copasi/utilities/utility.cpp.new copasi/utilities/utility.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/dgemm.cpp.new copasi/utilities/dgemm.cpp + touch -r copasi/utilities/dgemm.cpp copasi/utilities/dgemm.cpp.new + mv copasi/utilities/dgemm.cpp.new copasi/utilities/dgemm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CopasiTime.cpp.new copasi/utilities/CopasiTime.cpp + touch -r copasi/utilities/CopasiTime.cpp copasi/utilities/CopasiTime.cpp.new + mv copasi/utilities/CopasiTime.cpp.new copasi/utilities/CopasiTime.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/Cmd5.cpp.new copasi/utilities/Cmd5.cpp + touch -r copasi/utilities/Cmd5.cpp copasi/utilities/Cmd5.cpp.new + mv copasi/utilities/Cmd5.cpp.new copasi/utilities/Cmd5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CluX.cpp.new copasi/utilities/CluX.cpp + touch -r copasi/utilities/CluX.cpp copasi/utilities/CluX.cpp.new + mv copasi/utilities/CluX.cpp.new copasi/utilities/CluX.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CVersion.cpp.new copasi/utilities/CVersion.cpp + touch -r copasi/utilities/CVersion.cpp copasi/utilities/CVersion.cpp.new + mv copasi/utilities/CVersion.cpp.new copasi/utilities/CVersion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CValidity.cpp.new copasi/utilities/CValidity.cpp + touch -r copasi/utilities/CValidity.cpp copasi/utilities/CValidity.cpp.new + mv copasi/utilities/CValidity.cpp.new copasi/utilities/CValidity.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CValidatedUnit.cpp.new copasi/utilities/CValidatedUnit.cpp + touch -r copasi/utilities/CValidatedUnit.cpp copasi/utilities/CValidatedUnit.cpp.new + mv copasi/utilities/CValidatedUnit.cpp.new copasi/utilities/CValidatedUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitValidator.cpp.new copasi/utilities/CUnitValidator.cpp + touch -r copasi/utilities/CUnitValidator.cpp copasi/utilities/CUnitValidator.cpp.new + mv copasi/utilities/CUnitValidator.cpp.new copasi/utilities/CUnitValidator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitParser_yacc.cpp.new copasi/utilities/CUnitParser_yacc.cpp + touch -r copasi/utilities/CUnitParser_yacc.cpp copasi/utilities/CUnitParser_yacc.cpp.new + mv copasi/utilities/CUnitParser_yacc.cpp.new copasi/utilities/CUnitParser_yacc.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitParser_lex.cpp.new copasi/utilities/CUnitParser_lex.cpp + touch -r copasi/utilities/CUnitParser_lex.cpp copasi/utilities/CUnitParser_lex.cpp.new + mv copasi/utilities/CUnitParser_lex.cpp.new copasi/utilities/CUnitParser_lex.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitParser.cpp.new copasi/utilities/CUnitParser.cpp + touch -r copasi/utilities/CUnitParser.cpp copasi/utilities/CUnitParser.cpp.new + mv copasi/utilities/CUnitParser.cpp.new copasi/utilities/CUnitParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitDefinitionDB.cpp.new copasi/utilities/CUnitDefinitionDB.cpp + touch -r copasi/utilities/CUnitDefinitionDB.cpp copasi/utilities/CUnitDefinitionDB.cpp.new + mv copasi/utilities/CUnitDefinitionDB.cpp.new copasi/utilities/CUnitDefinitionDB.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitDefinition.cpp.new copasi/utilities/CUnitDefinition.cpp + touch -r copasi/utilities/CUnitDefinition.cpp copasi/utilities/CUnitDefinition.cpp.new + mv copasi/utilities/CUnitDefinition.cpp.new copasi/utilities/CUnitDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnitComponent.cpp.new copasi/utilities/CUnitComponent.cpp + touch -r copasi/utilities/CUnitComponent.cpp copasi/utilities/CUnitComponent.cpp.new + mv copasi/utilities/CUnitComponent.cpp.new copasi/utilities/CUnitComponent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CUnit.cpp.new copasi/utilities/CUnit.cpp + touch -r copasi/utilities/CUnit.cpp copasi/utilities/CUnit.cpp.new + mv copasi/utilities/CUnit.cpp.new copasi/utilities/CUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CTaskFactory.cpp.new copasi/utilities/CTaskFactory.cpp + touch -r copasi/utilities/CTaskFactory.cpp copasi/utilities/CTaskFactory.cpp.new + mv copasi/utilities/CTaskFactory.cpp.new copasi/utilities/CTaskFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CTaskEnum.cpp.new copasi/utilities/CTaskEnum.cpp + touch -r copasi/utilities/CTaskEnum.cpp copasi/utilities/CTaskEnum.cpp.new + mv copasi/utilities/CTaskEnum.cpp.new copasi/utilities/CTaskEnum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CTableCell.cpp.new copasi/utilities/CTableCell.cpp + touch -r copasi/utilities/CTableCell.cpp copasi/utilities/CTableCell.cpp.new + mv copasi/utilities/CTableCell.cpp.new copasi/utilities/CTableCell.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CSparseMatrix.cpp.new copasi/utilities/CSparseMatrix.cpp + touch -r copasi/utilities/CSparseMatrix.cpp copasi/utilities/CSparseMatrix.cpp.new + mv copasi/utilities/CSparseMatrix.cpp.new copasi/utilities/CSparseMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CSlider.cpp.new copasi/utilities/CSlider.cpp + touch -r copasi/utilities/CSlider.cpp copasi/utilities/CSlider.cpp.new + mv copasi/utilities/CSlider.cpp.new copasi/utilities/CSlider.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CReadConfig.cpp.new copasi/utilities/CReadConfig.cpp + touch -r copasi/utilities/CReadConfig.cpp copasi/utilities/CReadConfig.cpp.new + mv copasi/utilities/CReadConfig.cpp.new copasi/utilities/CReadConfig.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CProcessReport.cpp.new copasi/utilities/CProcessReport.cpp + touch -r copasi/utilities/CProcessReport.cpp copasi/utilities/CProcessReport.cpp.new + mv copasi/utilities/CProcessReport.cpp.new copasi/utilities/CProcessReport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CProblemFactory.cpp.new copasi/utilities/CProblemFactory.cpp + touch -r copasi/utilities/CProblemFactory.cpp copasi/utilities/CProblemFactory.cpp.new + mv copasi/utilities/CProblemFactory.cpp.new copasi/utilities/CProblemFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CParameterEstimationUtils.cpp.new copasi/utilities/CParameterEstimationUtils.cpp + touch -r copasi/utilities/CParameterEstimationUtils.cpp copasi/utilities/CParameterEstimationUtils.cpp.new + mv copasi/utilities/CParameterEstimationUtils.cpp.new copasi/utilities/CParameterEstimationUtils.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CMethodFactory.cpp.new copasi/utilities/CMethodFactory.cpp + touch -r copasi/utilities/CMethodFactory.cpp copasi/utilities/CMethodFactory.cpp.new + mv copasi/utilities/CMethodFactory.cpp.new copasi/utilities/CMethodFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CLinkMatrix.cpp.new copasi/utilities/CLinkMatrix.cpp + touch -r copasi/utilities/CLinkMatrix.cpp copasi/utilities/CLinkMatrix.cpp.new + mv copasi/utilities/CLinkMatrix.cpp.new copasi/utilities/CLinkMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CLeastSquareSolution.cpp.new copasi/utilities/CLeastSquareSolution.cpp + touch -r copasi/utilities/CLeastSquareSolution.cpp copasi/utilities/CLeastSquareSolution.cpp.new + mv copasi/utilities/CLeastSquareSolution.cpp.new copasi/utilities/CLeastSquareSolution.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CIndexedPriorityQueue.cpp.new copasi/utilities/CIndexedPriorityQueue.cpp + touch -r copasi/utilities/CIndexedPriorityQueue.cpp copasi/utilities/CIndexedPriorityQueue.cpp.new + mv copasi/utilities/CIndexedPriorityQueue.cpp.new copasi/utilities/CIndexedPriorityQueue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CExpressionGenerator.cpp.new copasi/utilities/CExpressionGenerator.cpp + touch -r copasi/utilities/CExpressionGenerator.cpp copasi/utilities/CExpressionGenerator.cpp.new + mv copasi/utilities/CExpressionGenerator.cpp.new copasi/utilities/CExpressionGenerator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CDirEntry.cpp.new copasi/utilities/CDirEntry.cpp + touch -r copasi/utilities/CDirEntry.cpp copasi/utilities/CDirEntry.cpp.new + mv copasi/utilities/CDirEntry.cpp.new copasi/utilities/CDirEntry.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CDependencyGraph.cpp.new copasi/utilities/CDependencyGraph.cpp + touch -r copasi/utilities/CDependencyGraph.cpp copasi/utilities/CDependencyGraph.cpp.new + mv copasi/utilities/CDependencyGraph.cpp.new copasi/utilities/CDependencyGraph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiTaskStatus.cpp.new copasi/utilities/CCopasiTaskStatus.cpp + touch -r copasi/utilities/CCopasiTaskStatus.cpp copasi/utilities/CCopasiTaskStatus.cpp.new + mv copasi/utilities/CCopasiTaskStatus.cpp.new copasi/utilities/CCopasiTaskStatus.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiTask.cpp.new copasi/utilities/CCopasiTask.cpp + touch -r copasi/utilities/CCopasiTask.cpp copasi/utilities/CCopasiTask.cpp.new + mv copasi/utilities/CCopasiTask.cpp.new copasi/utilities/CCopasiTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiProblem.cpp.new copasi/utilities/CCopasiProblem.cpp + touch -r copasi/utilities/CCopasiProblem.cpp copasi/utilities/CCopasiProblem.cpp.new + mv copasi/utilities/CCopasiProblem.cpp.new copasi/utilities/CCopasiProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiParameterGroup.cpp.new copasi/utilities/CCopasiParameterGroup.cpp + touch -r copasi/utilities/CCopasiParameterGroup.cpp copasi/utilities/CCopasiParameterGroup.cpp.new + mv copasi/utilities/CCopasiParameterGroup.cpp.new copasi/utilities/CCopasiParameterGroup.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiParameter.cpp.new copasi/utilities/CCopasiParameter.cpp + touch -r copasi/utilities/CCopasiParameter.cpp copasi/utilities/CCopasiParameter.cpp.new + mv copasi/utilities/CCopasiParameter.cpp.new copasi/utilities/CCopasiParameter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiMethod.cpp.new copasi/utilities/CCopasiMethod.cpp + touch -r copasi/utilities/CCopasiMethod.cpp copasi/utilities/CCopasiMethod.cpp.new + mv copasi/utilities/CCopasiMethod.cpp.new copasi/utilities/CCopasiMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiMessage.cpp.new copasi/utilities/CCopasiMessage.cpp + touch -r copasi/utilities/CCopasiMessage.cpp copasi/utilities/CCopasiMessage.cpp.new + mv copasi/utilities/CCopasiMessage.cpp.new copasi/utilities/CCopasiMessage.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CCopasiException.cpp.new copasi/utilities/CCopasiException.cpp + touch -r copasi/utilities/CCopasiException.cpp copasi/utilities/CCopasiException.cpp.new + mv copasi/utilities/CCopasiException.cpp.new copasi/utilities/CCopasiException.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CBrent.cpp.new copasi/utilities/CBrent.cpp + touch -r copasi/utilities/CBrent.cpp copasi/utilities/CBrent.cpp.new + mv copasi/utilities/CBrent.cpp.new copasi/utilities/CBrent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/utilities/CBaseUnit.cpp.new copasi/utilities/CBaseUnit.cpp + touch -r copasi/utilities/CBaseUnit.cpp copasi/utilities/CBaseUnit.cpp.new + mv copasi/utilities/CBaseUnit.cpp.new copasi/utilities/CBaseUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoUI/CQUndoDialog.cpp.new copasi/undoUI/CQUndoDialog.cpp + touch -r copasi/undoUI/CQUndoDialog.cpp copasi/undoUI/CQUndoDialog.cpp.new + mv copasi/undoUI/CQUndoDialog.cpp.new copasi/undoUI/CQUndoDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undoUI/CQUndoDM.cpp.new copasi/undoUI/CQUndoDM.cpp + touch -r copasi/undoUI/CQUndoDM.cpp copasi/undoUI/CQUndoDM.cpp.new + mv copasi/undoUI/CQUndoDM.cpp.new copasi/undoUI/CQUndoDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CUndoStack.cpp.new copasi/undo/CUndoStack.cpp + touch -r copasi/undo/CUndoStack.cpp copasi/undo/CUndoStack.cpp.new + mv copasi/undo/CUndoStack.cpp.new copasi/undo/CUndoStack.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CUndoObjectInterface.cpp.new copasi/undo/CUndoObjectInterface.cpp + touch -r copasi/undo/CUndoObjectInterface.cpp copasi/undo/CUndoObjectInterface.cpp.new + mv copasi/undo/CUndoObjectInterface.cpp.new copasi/undo/CUndoObjectInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CUndoData.cpp.new copasi/undo/CUndoData.cpp + touch -r copasi/undo/CUndoData.cpp copasi/undo/CUndoData.cpp.new + mv copasi/undo/CUndoData.cpp.new copasi/undo/CUndoData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CDataValue.cpp.new copasi/undo/CDataValue.cpp + touch -r copasi/undo/CDataValue.cpp copasi/undo/CDataValue.cpp.new + mv copasi/undo/CDataValue.cpp.new copasi/undo/CDataValue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/undo/CData.cpp.new copasi/undo/CData.cpp + touch -r copasi/undo/CData.cpp copasi/undo/CData.cpp.new + mv copasi/undo/CData.cpp.new copasi/undo/CData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CTSSATask.cpp.new copasi/tssanalysis/CTSSATask.cpp + touch -r copasi/tssanalysis/CTSSATask.cpp copasi/tssanalysis/CTSSATask.cpp.new + mv copasi/tssanalysis/CTSSATask.cpp.new copasi/tssanalysis/CTSSATask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CTSSAProblem.cpp.new copasi/tssanalysis/CTSSAProblem.cpp + touch -r copasi/tssanalysis/CTSSAProblem.cpp copasi/tssanalysis/CTSSAProblem.cpp.new + mv copasi/tssanalysis/CTSSAProblem.cpp.new copasi/tssanalysis/CTSSAProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CTSSAMethod.cpp.new copasi/tssanalysis/CTSSAMethod.cpp + touch -r copasi/tssanalysis/CTSSAMethod.cpp copasi/tssanalysis/CTSSAMethod.cpp.new + mv copasi/tssanalysis/CTSSAMethod.cpp.new copasi/tssanalysis/CTSSAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CILDMModifiedMethod.cpp.new copasi/tssanalysis/CILDMModifiedMethod.cpp + touch -r copasi/tssanalysis/CILDMModifiedMethod.cpp copasi/tssanalysis/CILDMModifiedMethod.cpp.new + mv copasi/tssanalysis/CILDMModifiedMethod.cpp.new copasi/tssanalysis/CILDMModifiedMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CILDMMethod.cpp.new copasi/tssanalysis/CILDMMethod.cpp + touch -r copasi/tssanalysis/CILDMMethod.cpp copasi/tssanalysis/CILDMMethod.cpp.new + mv copasi/tssanalysis/CILDMMethod.cpp.new copasi/tssanalysis/CILDMMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tssanalysis/CCSPMethod.cpp.new copasi/tssanalysis/CCSPMethod.cpp + touch -r copasi/tssanalysis/CCSPMethod.cpp copasi/tssanalysis/CCSPMethod.cpp.new + mv copasi/tssanalysis/CCSPMethod.cpp.new copasi/tssanalysis/CCSPMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporterXPPAUT.cpp.new copasi/tss/CODEExporterXPPAUT.cpp + touch -r copasi/tss/CODEExporterXPPAUT.cpp copasi/tss/CODEExporterXPPAUT.cpp.new + mv copasi/tss/CODEExporterXPPAUT.cpp.new copasi/tss/CODEExporterXPPAUT.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporterC.cpp.new copasi/tss/CODEExporterC.cpp + touch -r copasi/tss/CODEExporterC.cpp copasi/tss/CODEExporterC.cpp.new + mv copasi/tss/CODEExporterC.cpp.new copasi/tss/CODEExporterC.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporterBM.cpp.new copasi/tss/CODEExporterBM.cpp + touch -r copasi/tss/CODEExporterBM.cpp copasi/tss/CODEExporterBM.cpp.new + mv copasi/tss/CODEExporterBM.cpp.new copasi/tss/CODEExporterBM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tss/CODEExporter.cpp.new copasi/tss/CODEExporter.cpp + touch -r copasi/tss/CODEExporter.cpp copasi/tss/CODEExporter.cpp.new + mv copasi/tss/CODEExporter.cpp.new copasi/tss/CODEExporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryTask.cpp.new copasi/trajectory/CTrajectoryTask.cpp + touch -r copasi/trajectory/CTrajectoryTask.cpp copasi/trajectory/CTrajectoryTask.cpp.new + mv copasi/trajectory/CTrajectoryTask.cpp.new copasi/trajectory/CTrajectoryTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryProblem.cpp.new copasi/trajectory/CTrajectoryProblem.cpp + touch -r copasi/trajectory/CTrajectoryProblem.cpp copasi/trajectory/CTrajectoryProblem.cpp.new + mv copasi/trajectory/CTrajectoryProblem.cpp.new copasi/trajectory/CTrajectoryProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp.new copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp + touch -r copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp.new + mv copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp.new copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajectoryMethod.cpp.new copasi/trajectory/CTrajectoryMethod.cpp + touch -r copasi/trajectory/CTrajectoryMethod.cpp copasi/trajectory/CTrajectoryMethod.cpp.new + mv copasi/trajectory/CTrajectoryMethod.cpp.new copasi/trajectory/CTrajectoryMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTrajAdaptiveSA.cpp.new copasi/trajectory/CTrajAdaptiveSA.cpp + touch -r copasi/trajectory/CTrajAdaptiveSA.cpp copasi/trajectory/CTrajAdaptiveSA.cpp.new + mv copasi/trajectory/CTrajAdaptiveSA.cpp.new copasi/trajectory/CTrajAdaptiveSA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTimeSeries.cpp.new copasi/trajectory/CTimeSeries.cpp + touch -r copasi/trajectory/CTimeSeries.cpp copasi/trajectory/CTimeSeries.cpp.new + mv copasi/trajectory/CTimeSeries.cpp.new copasi/trajectory/CTimeSeries.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CTauLeapMethod.cpp.new copasi/trajectory/CTauLeapMethod.cpp + touch -r copasi/trajectory/CTauLeapMethod.cpp copasi/trajectory/CTauLeapMethod.cpp.new + mv copasi/trajectory/CTauLeapMethod.cpp.new copasi/trajectory/CTauLeapMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochasticRungeKuttaRI5.cpp.new copasi/trajectory/CStochasticRungeKuttaRI5.cpp + touch -r copasi/trajectory/CStochasticRungeKuttaRI5.cpp copasi/trajectory/CStochasticRungeKuttaRI5.cpp.new + mv copasi/trajectory/CStochasticRungeKuttaRI5.cpp.new copasi/trajectory/CStochasticRungeKuttaRI5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochNextReactionMethod.cpp.new copasi/trajectory/CStochNextReactionMethod.cpp + touch -r copasi/trajectory/CStochNextReactionMethod.cpp copasi/trajectory/CStochNextReactionMethod.cpp.new + mv copasi/trajectory/CStochNextReactionMethod.cpp.new copasi/trajectory/CStochNextReactionMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochMethod.cpp.new copasi/trajectory/CStochMethod.cpp + touch -r copasi/trajectory/CStochMethod.cpp copasi/trajectory/CStochMethod.cpp.new + mv copasi/trajectory/CStochMethod.cpp.new copasi/trajectory/CStochMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CStochDirectMethod.cpp.new copasi/trajectory/CStochDirectMethod.cpp + touch -r copasi/trajectory/CStochDirectMethod.cpp copasi/trajectory/CStochDirectMethod.cpp.new + mv copasi/trajectory/CStochDirectMethod.cpp.new copasi/trajectory/CStochDirectMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CRungeKutta.cpp.new copasi/trajectory/CRungeKutta.cpp + touch -r copasi/trajectory/CRungeKutta.cpp copasi/trajectory/CRungeKutta.cpp.new + mv copasi/trajectory/CRungeKutta.cpp.new copasi/trajectory/CRungeKutta.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CRootFinder.cpp.new copasi/trajectory/CRootFinder.cpp + touch -r copasi/trajectory/CRootFinder.cpp copasi/trajectory/CRootFinder.cpp.new + mv copasi/trajectory/CRootFinder.cpp.new copasi/trajectory/CRootFinder.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CRadau5Method.cpp.new copasi/trajectory/CRadau5Method.cpp + touch -r copasi/trajectory/CRadau5Method.cpp copasi/trajectory/CRadau5Method.cpp.new + mv copasi/trajectory/CRadau5Method.cpp.new copasi/trajectory/CRadau5Method.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CLsodaMethod2.cpp.new copasi/trajectory/CLsodaMethod2.cpp + touch -r copasi/trajectory/CLsodaMethod2.cpp copasi/trajectory/CLsodaMethod2.cpp.new + mv copasi/trajectory/CLsodaMethod2.cpp.new copasi/trajectory/CLsodaMethod2.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CLsodaMethod.cpp.new copasi/trajectory/CLsodaMethod.cpp + touch -r copasi/trajectory/CLsodaMethod.cpp copasi/trajectory/CLsodaMethod.cpp.new + mv copasi/trajectory/CLsodaMethod.cpp.new copasi/trajectory/CLsodaMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridNextReactionRKMethod.cpp.new copasi/trajectory/CHybridNextReactionRKMethod.cpp + touch -r copasi/trajectory/CHybridNextReactionRKMethod.cpp copasi/trajectory/CHybridNextReactionRKMethod.cpp.new + mv copasi/trajectory/CHybridNextReactionRKMethod.cpp.new copasi/trajectory/CHybridNextReactionRKMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridNextReactionLSODAMethod.cpp.new copasi/trajectory/CHybridNextReactionLSODAMethod.cpp + touch -r copasi/trajectory/CHybridNextReactionLSODAMethod.cpp copasi/trajectory/CHybridNextReactionLSODAMethod.cpp.new + mv copasi/trajectory/CHybridNextReactionLSODAMethod.cpp.new copasi/trajectory/CHybridNextReactionLSODAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridMethodODE45.cpp.new copasi/trajectory/CHybridMethodODE45.cpp + touch -r copasi/trajectory/CHybridMethodODE45.cpp copasi/trajectory/CHybridMethodODE45.cpp.new + mv copasi/trajectory/CHybridMethodODE45.cpp.new copasi/trajectory/CHybridMethodODE45.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/trajectory/CHybridMethod.cpp.new copasi/trajectory/CHybridMethod.cpp + touch -r copasi/trajectory/CHybridMethod.cpp copasi/trajectory/CHybridMethod.cpp.new + mv copasi/trajectory/CHybridMethod.cpp.new copasi/trajectory/CHybridMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/timesens/CTimeSensTask.cpp.new copasi/timesens/CTimeSensTask.cpp + touch -r copasi/timesens/CTimeSensTask.cpp copasi/timesens/CTimeSensTask.cpp.new + mv copasi/timesens/CTimeSensTask.cpp.new copasi/timesens/CTimeSensTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/timesens/CTimeSensProblem.cpp.new copasi/timesens/CTimeSensProblem.cpp + touch -r copasi/timesens/CTimeSensProblem.cpp copasi/timesens/CTimeSensProblem.cpp.new + mv copasi/timesens/CTimeSensProblem.cpp.new copasi/timesens/CTimeSensProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/timesens/CTimeSensMethod.cpp.new copasi/timesens/CTimeSensMethod.cpp + touch -r copasi/timesens/CTimeSensMethod.cpp copasi/timesens/CTimeSensMethod.cpp.new + mv copasi/timesens/CTimeSensMethod.cpp.new copasi/timesens/CTimeSensMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/timesens/CTimeSensLsodaMethod.cpp.new copasi/timesens/CTimeSensLsodaMethod.cpp + touch -r copasi/timesens/CTimeSensLsodaMethod.cpp copasi/timesens/CTimeSensLsodaMethod.cpp.new + mv copasi/timesens/CTimeSensLsodaMethod.cpp.new copasi/timesens/CTimeSensLsodaMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tex/CStructureParser.cpp.new copasi/tex/CStructureParser.cpp + touch -r copasi/tex/CStructureParser.cpp copasi/tex/CStructureParser.cpp.new + mv copasi/tex/CStructureParser.cpp.new copasi/tex/CStructureParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/tex/CMathMLToTeX.cpp.new copasi/tex/CMathMLToTeX.cpp + touch -r copasi/tex/CMathMLToTeX.cpp copasi/tex/CMathMLToTeX.cpp.new + mv copasi/tex/CMathMLToTeX.cpp.new copasi/tex/CMathMLToTeX.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/test.cpp.new copasi/test2/test.cpp + touch -r copasi/test2/test.cpp copasi/test2/test.cpp.new + mv copasi/test2/test.cpp.new copasi/test2/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalTranslation.cpp.new copasi/test2/CNormalTranslation.cpp + touch -r copasi/test2/CNormalTranslation.cpp copasi/test2/CNormalTranslation.cpp.new + mv copasi/test2/CNormalTranslation.cpp.new copasi/test2/CNormalTranslation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalSum.cpp.new copasi/test2/CNormalSum.cpp + touch -r copasi/test2/CNormalSum.cpp copasi/test2/CNormalSum.cpp.new + mv copasi/test2/CNormalSum.cpp.new copasi/test2/CNormalSum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalProduct.cpp.new copasi/test2/CNormalProduct.cpp + touch -r copasi/test2/CNormalProduct.cpp copasi/test2/CNormalProduct.cpp.new + mv copasi/test2/CNormalProduct.cpp.new copasi/test2/CNormalProduct.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalLcm.cpp.new copasi/test2/CNormalLcm.cpp + touch -r copasi/test2/CNormalLcm.cpp copasi/test2/CNormalLcm.cpp.new + mv copasi/test2/CNormalLcm.cpp.new copasi/test2/CNormalLcm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalItemPower.cpp.new copasi/test2/CNormalItemPower.cpp + touch -r copasi/test2/CNormalItemPower.cpp copasi/test2/CNormalItemPower.cpp.new + mv copasi/test2/CNormalItemPower.cpp.new copasi/test2/CNormalItemPower.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalItem.cpp.new copasi/test2/CNormalItem.cpp + touch -r copasi/test2/CNormalItem.cpp copasi/test2/CNormalItem.cpp.new + mv copasi/test2/CNormalItem.cpp.new copasi/test2/CNormalItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test2/CNormalFraction.cpp.new copasi/test2/CNormalFraction.cpp + touch -r copasi/test2/CNormalFraction.cpp copasi/test2/CNormalFraction.cpp.new + mv copasi/test2/CNormalFraction.cpp.new copasi/test2/CNormalFraction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/test/test.cpp.new copasi/test/test.cpp + touch -r copasi/test/test.cpp copasi/test/test.cpp.new + mv copasi/test/test.cpp.new copasi/test/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CSteadyStateTask.cpp.new copasi/steadystate/CSteadyStateTask.cpp + touch -r copasi/steadystate/CSteadyStateTask.cpp copasi/steadystate/CSteadyStateTask.cpp.new + mv copasi/steadystate/CSteadyStateTask.cpp.new copasi/steadystate/CSteadyStateTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CSteadyStateProblem.cpp.new copasi/steadystate/CSteadyStateProblem.cpp + touch -r copasi/steadystate/CSteadyStateProblem.cpp copasi/steadystate/CSteadyStateProblem.cpp.new + mv copasi/steadystate/CSteadyStateProblem.cpp.new copasi/steadystate/CSteadyStateProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CSteadyStateMethod.cpp.new copasi/steadystate/CSteadyStateMethod.cpp + touch -r copasi/steadystate/CSteadyStateMethod.cpp copasi/steadystate/CSteadyStateMethod.cpp.new + mv copasi/steadystate/CSteadyStateMethod.cpp.new copasi/steadystate/CSteadyStateMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CNewtonMethod.cpp.new copasi/steadystate/CNewtonMethod.cpp + touch -r copasi/steadystate/CNewtonMethod.cpp copasi/steadystate/CNewtonMethod.cpp.new + mv copasi/steadystate/CNewtonMethod.cpp.new copasi/steadystate/CNewtonMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CMCATask.cpp.new copasi/steadystate/CMCATask.cpp + touch -r copasi/steadystate/CMCATask.cpp copasi/steadystate/CMCATask.cpp.new + mv copasi/steadystate/CMCATask.cpp.new copasi/steadystate/CMCATask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CMCAProblem.cpp.new copasi/steadystate/CMCAProblem.cpp + touch -r copasi/steadystate/CMCAProblem.cpp copasi/steadystate/CMCAProblem.cpp.new + mv copasi/steadystate/CMCAProblem.cpp.new copasi/steadystate/CMCAProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CMCAMethod.cpp.new copasi/steadystate/CMCAMethod.cpp + touch -r copasi/steadystate/CMCAMethod.cpp copasi/steadystate/CMCAMethod.cpp.new + mv copasi/steadystate/CMCAMethod.cpp.new copasi/steadystate/CMCAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/steadystate/CEigen.cpp.new copasi/steadystate/CEigen.cpp + touch -r copasi/steadystate/CEigen.cpp copasi/steadystate/CEigen.cpp.new + mv copasi/steadystate/CEigen.cpp.new copasi/steadystate/CEigen.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sensitivities/CSensTask.cpp.new copasi/sensitivities/CSensTask.cpp + touch -r copasi/sensitivities/CSensTask.cpp copasi/sensitivities/CSensTask.cpp.new + mv copasi/sensitivities/CSensTask.cpp.new copasi/sensitivities/CSensTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sensitivities/CSensProblem.cpp.new copasi/sensitivities/CSensProblem.cpp + touch -r copasi/sensitivities/CSensProblem.cpp copasi/sensitivities/CSensProblem.cpp.new + mv copasi/sensitivities/CSensProblem.cpp.new copasi/sensitivities/CSensProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sensitivities/CSensMethod.cpp.new copasi/sensitivities/CSensMethod.cpp + touch -r copasi/sensitivities/CSensMethod.cpp copasi/sensitivities/CSensMethod.cpp.new + mv copasi/sensitivities/CSensMethod.cpp.new copasi/sensitivities/CSensMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sedml/SEDMLUtils.cpp.new copasi/sedml/SEDMLUtils.cpp + touch -r copasi/sedml/SEDMLUtils.cpp copasi/sedml/SEDMLUtils.cpp.new + mv copasi/sedml/SEDMLUtils.cpp.new copasi/sedml/SEDMLUtils.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sedml/SEDMLImporter.cpp.new copasi/sedml/SEDMLImporter.cpp + touch -r copasi/sedml/SEDMLImporter.cpp copasi/sedml/SEDMLImporter.cpp.new + mv copasi/sedml/SEDMLImporter.cpp.new copasi/sedml/SEDMLImporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sedml/CSEDMLExporter.cpp.new copasi/sedml/CSEDMLExporter.cpp + touch -r copasi/sedml/CSEDMLExporter.cpp copasi/sedml/CSEDMLExporter.cpp.new + mv copasi/sedml/CSEDMLExporter.cpp.new copasi/sedml/CSEDMLExporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/scan/CScanTask.cpp.new copasi/scan/CScanTask.cpp + touch -r copasi/scan/CScanTask.cpp copasi/scan/CScanTask.cpp.new + mv copasi/scan/CScanTask.cpp.new copasi/scan/CScanTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/scan/CScanProblem.cpp.new copasi/scan/CScanProblem.cpp + touch -r copasi/scan/CScanProblem.cpp copasi/scan/CScanProblem.cpp.new + mv copasi/scan/CScanProblem.cpp.new copasi/scan/CScanProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/scan/CScanMethod.cpp.new copasi/scan/CScanMethod.cpp + touch -r copasi/scan/CScanMethod.cpp copasi/scan/CScanMethod.cpp.new + mv copasi/scan/CScanMethod.cpp.new copasi/scan/CScanMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/Expression2PresentationMMLUnits.cpp.new copasi/sbmlunit/Expression2PresentationMMLUnits.cpp + touch -r copasi/sbmlunit/Expression2PresentationMMLUnits.cpp copasi/sbmlunit/Expression2PresentationMMLUnits.cpp.new + mv copasi/sbmlunit/Expression2PresentationMMLUnits.cpp.new copasi/sbmlunit/Expression2PresentationMMLUnits.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/Expression2PresentationMML.cpp.new copasi/sbmlunit/Expression2PresentationMML.cpp + touch -r copasi/sbmlunit/Expression2PresentationMML.cpp copasi/sbmlunit/Expression2PresentationMML.cpp.new + mv copasi/sbmlunit/Expression2PresentationMML.cpp.new copasi/sbmlunit/Expression2PresentationMML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/CSBMLunitInterface.cpp.new copasi/sbmlunit/CSBMLunitInterface.cpp + touch -r copasi/sbmlunit/CSBMLunitInterface.cpp copasi/sbmlunit/CSBMLunitInterface.cpp.new + mv copasi/sbmlunit/CSBMLunitInterface.cpp.new copasi/sbmlunit/CSBMLunitInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbmlunit/CSBMLunit.cpp.new copasi/sbmlunit/CSBMLunit.cpp + touch -r copasi/sbmlunit/CSBMLunit.cpp copasi/sbmlunit/CSBMLunit.cpp.new + mv copasi/sbmlunit/CSBMLunit.cpp.new copasi/sbmlunit/CSBMLunit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/utilities.cpp.new copasi/sbml/unittests/utilities.cpp + touch -r copasi/sbml/unittests/utilities.cpp copasi/sbml/unittests/utilities.cpp.new + mv copasi/sbml/unittests/utilities.cpp.new copasi/sbml/unittests/utilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000104.cpp.new copasi/sbml/unittests/test000104.cpp + touch -r copasi/sbml/unittests/test000104.cpp copasi/sbml/unittests/test000104.cpp.new + mv copasi/sbml/unittests/test000104.cpp.new copasi/sbml/unittests/test000104.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000103.cpp.new copasi/sbml/unittests/test000103.cpp + touch -r copasi/sbml/unittests/test000103.cpp copasi/sbml/unittests/test000103.cpp.new + mv copasi/sbml/unittests/test000103.cpp.new copasi/sbml/unittests/test000103.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000102.cpp.new copasi/sbml/unittests/test000102.cpp + touch -r copasi/sbml/unittests/test000102.cpp copasi/sbml/unittests/test000102.cpp.new + mv copasi/sbml/unittests/test000102.cpp.new copasi/sbml/unittests/test000102.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000101.cpp.new copasi/sbml/unittests/test000101.cpp + touch -r copasi/sbml/unittests/test000101.cpp copasi/sbml/unittests/test000101.cpp.new + mv copasi/sbml/unittests/test000101.cpp.new copasi/sbml/unittests/test000101.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000100.cpp.new copasi/sbml/unittests/test000100.cpp + touch -r copasi/sbml/unittests/test000100.cpp copasi/sbml/unittests/test000100.cpp.new + mv copasi/sbml/unittests/test000100.cpp.new copasi/sbml/unittests/test000100.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000099.cpp.new copasi/sbml/unittests/test000099.cpp + touch -r copasi/sbml/unittests/test000099.cpp copasi/sbml/unittests/test000099.cpp.new + mv copasi/sbml/unittests/test000099.cpp.new copasi/sbml/unittests/test000099.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000098.cpp.new copasi/sbml/unittests/test000098.cpp + touch -r copasi/sbml/unittests/test000098.cpp copasi/sbml/unittests/test000098.cpp.new + mv copasi/sbml/unittests/test000098.cpp.new copasi/sbml/unittests/test000098.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000097.cpp.new copasi/sbml/unittests/test000097.cpp + touch -r copasi/sbml/unittests/test000097.cpp copasi/sbml/unittests/test000097.cpp.new + mv copasi/sbml/unittests/test000097.cpp.new copasi/sbml/unittests/test000097.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000096.cpp.new copasi/sbml/unittests/test000096.cpp + touch -r copasi/sbml/unittests/test000096.cpp copasi/sbml/unittests/test000096.cpp.new + mv copasi/sbml/unittests/test000096.cpp.new copasi/sbml/unittests/test000096.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000095.cpp.new copasi/sbml/unittests/test000095.cpp + touch -r copasi/sbml/unittests/test000095.cpp copasi/sbml/unittests/test000095.cpp.new + mv copasi/sbml/unittests/test000095.cpp.new copasi/sbml/unittests/test000095.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000094.cpp.new copasi/sbml/unittests/test000094.cpp + touch -r copasi/sbml/unittests/test000094.cpp copasi/sbml/unittests/test000094.cpp.new + mv copasi/sbml/unittests/test000094.cpp.new copasi/sbml/unittests/test000094.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000093.cpp.new copasi/sbml/unittests/test000093.cpp + touch -r copasi/sbml/unittests/test000093.cpp copasi/sbml/unittests/test000093.cpp.new + mv copasi/sbml/unittests/test000093.cpp.new copasi/sbml/unittests/test000093.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000092.cpp.new copasi/sbml/unittests/test000092.cpp + touch -r copasi/sbml/unittests/test000092.cpp copasi/sbml/unittests/test000092.cpp.new + mv copasi/sbml/unittests/test000092.cpp.new copasi/sbml/unittests/test000092.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000091.cpp.new copasi/sbml/unittests/test000091.cpp + touch -r copasi/sbml/unittests/test000091.cpp copasi/sbml/unittests/test000091.cpp.new + mv copasi/sbml/unittests/test000091.cpp.new copasi/sbml/unittests/test000091.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000090.cpp.new copasi/sbml/unittests/test000090.cpp + touch -r copasi/sbml/unittests/test000090.cpp copasi/sbml/unittests/test000090.cpp.new + mv copasi/sbml/unittests/test000090.cpp.new copasi/sbml/unittests/test000090.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000089.cpp.new copasi/sbml/unittests/test000089.cpp + touch -r copasi/sbml/unittests/test000089.cpp copasi/sbml/unittests/test000089.cpp.new + mv copasi/sbml/unittests/test000089.cpp.new copasi/sbml/unittests/test000089.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000088.cpp.new copasi/sbml/unittests/test000088.cpp + touch -r copasi/sbml/unittests/test000088.cpp copasi/sbml/unittests/test000088.cpp.new + mv copasi/sbml/unittests/test000088.cpp.new copasi/sbml/unittests/test000088.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000087.cpp.new copasi/sbml/unittests/test000087.cpp + touch -r copasi/sbml/unittests/test000087.cpp copasi/sbml/unittests/test000087.cpp.new + mv copasi/sbml/unittests/test000087.cpp.new copasi/sbml/unittests/test000087.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000086.cpp.new copasi/sbml/unittests/test000086.cpp + touch -r copasi/sbml/unittests/test000086.cpp copasi/sbml/unittests/test000086.cpp.new + mv copasi/sbml/unittests/test000086.cpp.new copasi/sbml/unittests/test000086.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000085.cpp.new copasi/sbml/unittests/test000085.cpp + touch -r copasi/sbml/unittests/test000085.cpp copasi/sbml/unittests/test000085.cpp.new + mv copasi/sbml/unittests/test000085.cpp.new copasi/sbml/unittests/test000085.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000084.cpp.new copasi/sbml/unittests/test000084.cpp + touch -r copasi/sbml/unittests/test000084.cpp copasi/sbml/unittests/test000084.cpp.new + mv copasi/sbml/unittests/test000084.cpp.new copasi/sbml/unittests/test000084.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000083.cpp.new copasi/sbml/unittests/test000083.cpp + touch -r copasi/sbml/unittests/test000083.cpp copasi/sbml/unittests/test000083.cpp.new + mv copasi/sbml/unittests/test000083.cpp.new copasi/sbml/unittests/test000083.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000082.cpp.new copasi/sbml/unittests/test000082.cpp + touch -r copasi/sbml/unittests/test000082.cpp copasi/sbml/unittests/test000082.cpp.new + mv copasi/sbml/unittests/test000082.cpp.new copasi/sbml/unittests/test000082.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000081.cpp.new copasi/sbml/unittests/test000081.cpp + touch -r copasi/sbml/unittests/test000081.cpp copasi/sbml/unittests/test000081.cpp.new + mv copasi/sbml/unittests/test000081.cpp.new copasi/sbml/unittests/test000081.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000080.cpp.new copasi/sbml/unittests/test000080.cpp + touch -r copasi/sbml/unittests/test000080.cpp copasi/sbml/unittests/test000080.cpp.new + mv copasi/sbml/unittests/test000080.cpp.new copasi/sbml/unittests/test000080.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000079.cpp.new copasi/sbml/unittests/test000079.cpp + touch -r copasi/sbml/unittests/test000079.cpp copasi/sbml/unittests/test000079.cpp.new + mv copasi/sbml/unittests/test000079.cpp.new copasi/sbml/unittests/test000079.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000078.cpp.new copasi/sbml/unittests/test000078.cpp + touch -r copasi/sbml/unittests/test000078.cpp copasi/sbml/unittests/test000078.cpp.new + mv copasi/sbml/unittests/test000078.cpp.new copasi/sbml/unittests/test000078.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000077.cpp.new copasi/sbml/unittests/test000077.cpp + touch -r copasi/sbml/unittests/test000077.cpp copasi/sbml/unittests/test000077.cpp.new + mv copasi/sbml/unittests/test000077.cpp.new copasi/sbml/unittests/test000077.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000076.cpp.new copasi/sbml/unittests/test000076.cpp + touch -r copasi/sbml/unittests/test000076.cpp copasi/sbml/unittests/test000076.cpp.new + mv copasi/sbml/unittests/test000076.cpp.new copasi/sbml/unittests/test000076.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000075.cpp.new copasi/sbml/unittests/test000075.cpp + touch -r copasi/sbml/unittests/test000075.cpp copasi/sbml/unittests/test000075.cpp.new + mv copasi/sbml/unittests/test000075.cpp.new copasi/sbml/unittests/test000075.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000074.cpp.new copasi/sbml/unittests/test000074.cpp + touch -r copasi/sbml/unittests/test000074.cpp copasi/sbml/unittests/test000074.cpp.new + mv copasi/sbml/unittests/test000074.cpp.new copasi/sbml/unittests/test000074.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000073.cpp.new copasi/sbml/unittests/test000073.cpp + touch -r copasi/sbml/unittests/test000073.cpp copasi/sbml/unittests/test000073.cpp.new + mv copasi/sbml/unittests/test000073.cpp.new copasi/sbml/unittests/test000073.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000072.cpp.new copasi/sbml/unittests/test000072.cpp + touch -r copasi/sbml/unittests/test000072.cpp copasi/sbml/unittests/test000072.cpp.new + mv copasi/sbml/unittests/test000072.cpp.new copasi/sbml/unittests/test000072.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000071.cpp.new copasi/sbml/unittests/test000071.cpp + touch -r copasi/sbml/unittests/test000071.cpp copasi/sbml/unittests/test000071.cpp.new + mv copasi/sbml/unittests/test000071.cpp.new copasi/sbml/unittests/test000071.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000070.cpp.new copasi/sbml/unittests/test000070.cpp + touch -r copasi/sbml/unittests/test000070.cpp copasi/sbml/unittests/test000070.cpp.new + mv copasi/sbml/unittests/test000070.cpp.new copasi/sbml/unittests/test000070.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000069.cpp.new copasi/sbml/unittests/test000069.cpp + touch -r copasi/sbml/unittests/test000069.cpp copasi/sbml/unittests/test000069.cpp.new + mv copasi/sbml/unittests/test000069.cpp.new copasi/sbml/unittests/test000069.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000068.cpp.new copasi/sbml/unittests/test000068.cpp + touch -r copasi/sbml/unittests/test000068.cpp copasi/sbml/unittests/test000068.cpp.new + mv copasi/sbml/unittests/test000068.cpp.new copasi/sbml/unittests/test000068.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000067.cpp.new copasi/sbml/unittests/test000067.cpp + touch -r copasi/sbml/unittests/test000067.cpp copasi/sbml/unittests/test000067.cpp.new + mv copasi/sbml/unittests/test000067.cpp.new copasi/sbml/unittests/test000067.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000066.cpp.new copasi/sbml/unittests/test000066.cpp + touch -r copasi/sbml/unittests/test000066.cpp copasi/sbml/unittests/test000066.cpp.new + mv copasi/sbml/unittests/test000066.cpp.new copasi/sbml/unittests/test000066.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000065.cpp.new copasi/sbml/unittests/test000065.cpp + touch -r copasi/sbml/unittests/test000065.cpp copasi/sbml/unittests/test000065.cpp.new + mv copasi/sbml/unittests/test000065.cpp.new copasi/sbml/unittests/test000065.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000064.cpp.new copasi/sbml/unittests/test000064.cpp + touch -r copasi/sbml/unittests/test000064.cpp copasi/sbml/unittests/test000064.cpp.new + mv copasi/sbml/unittests/test000064.cpp.new copasi/sbml/unittests/test000064.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000063.cpp.new copasi/sbml/unittests/test000063.cpp + touch -r copasi/sbml/unittests/test000063.cpp copasi/sbml/unittests/test000063.cpp.new + mv copasi/sbml/unittests/test000063.cpp.new copasi/sbml/unittests/test000063.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000062.cpp.new copasi/sbml/unittests/test000062.cpp + touch -r copasi/sbml/unittests/test000062.cpp copasi/sbml/unittests/test000062.cpp.new + mv copasi/sbml/unittests/test000062.cpp.new copasi/sbml/unittests/test000062.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000061.cpp.new copasi/sbml/unittests/test000061.cpp + touch -r copasi/sbml/unittests/test000061.cpp copasi/sbml/unittests/test000061.cpp.new + mv copasi/sbml/unittests/test000061.cpp.new copasi/sbml/unittests/test000061.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000060.cpp.new copasi/sbml/unittests/test000060.cpp + touch -r copasi/sbml/unittests/test000060.cpp copasi/sbml/unittests/test000060.cpp.new + mv copasi/sbml/unittests/test000060.cpp.new copasi/sbml/unittests/test000060.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000059.cpp.new copasi/sbml/unittests/test000059.cpp + touch -r copasi/sbml/unittests/test000059.cpp copasi/sbml/unittests/test000059.cpp.new + mv copasi/sbml/unittests/test000059.cpp.new copasi/sbml/unittests/test000059.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000058.cpp.new copasi/sbml/unittests/test000058.cpp + touch -r copasi/sbml/unittests/test000058.cpp copasi/sbml/unittests/test000058.cpp.new + mv copasi/sbml/unittests/test000058.cpp.new copasi/sbml/unittests/test000058.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000057.cpp.new copasi/sbml/unittests/test000057.cpp + touch -r copasi/sbml/unittests/test000057.cpp copasi/sbml/unittests/test000057.cpp.new + mv copasi/sbml/unittests/test000057.cpp.new copasi/sbml/unittests/test000057.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000056.cpp.new copasi/sbml/unittests/test000056.cpp + touch -r copasi/sbml/unittests/test000056.cpp copasi/sbml/unittests/test000056.cpp.new + mv copasi/sbml/unittests/test000056.cpp.new copasi/sbml/unittests/test000056.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000055.cpp.new copasi/sbml/unittests/test000055.cpp + touch -r copasi/sbml/unittests/test000055.cpp copasi/sbml/unittests/test000055.cpp.new + mv copasi/sbml/unittests/test000055.cpp.new copasi/sbml/unittests/test000055.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000054.cpp.new copasi/sbml/unittests/test000054.cpp + touch -r copasi/sbml/unittests/test000054.cpp copasi/sbml/unittests/test000054.cpp.new + mv copasi/sbml/unittests/test000054.cpp.new copasi/sbml/unittests/test000054.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000053.cpp.new copasi/sbml/unittests/test000053.cpp + touch -r copasi/sbml/unittests/test000053.cpp copasi/sbml/unittests/test000053.cpp.new + mv copasi/sbml/unittests/test000053.cpp.new copasi/sbml/unittests/test000053.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000052.cpp.new copasi/sbml/unittests/test000052.cpp + touch -r copasi/sbml/unittests/test000052.cpp copasi/sbml/unittests/test000052.cpp.new + mv copasi/sbml/unittests/test000052.cpp.new copasi/sbml/unittests/test000052.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000051.cpp.new copasi/sbml/unittests/test000051.cpp + touch -r copasi/sbml/unittests/test000051.cpp copasi/sbml/unittests/test000051.cpp.new + mv copasi/sbml/unittests/test000051.cpp.new copasi/sbml/unittests/test000051.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000050.cpp.new copasi/sbml/unittests/test000050.cpp + touch -r copasi/sbml/unittests/test000050.cpp copasi/sbml/unittests/test000050.cpp.new + mv copasi/sbml/unittests/test000050.cpp.new copasi/sbml/unittests/test000050.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000049.cpp.new copasi/sbml/unittests/test000049.cpp + touch -r copasi/sbml/unittests/test000049.cpp copasi/sbml/unittests/test000049.cpp.new + mv copasi/sbml/unittests/test000049.cpp.new copasi/sbml/unittests/test000049.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000048.cpp.new copasi/sbml/unittests/test000048.cpp + touch -r copasi/sbml/unittests/test000048.cpp copasi/sbml/unittests/test000048.cpp.new + mv copasi/sbml/unittests/test000048.cpp.new copasi/sbml/unittests/test000048.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000047.cpp.new copasi/sbml/unittests/test000047.cpp + touch -r copasi/sbml/unittests/test000047.cpp copasi/sbml/unittests/test000047.cpp.new + mv copasi/sbml/unittests/test000047.cpp.new copasi/sbml/unittests/test000047.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000046.cpp.new copasi/sbml/unittests/test000046.cpp + touch -r copasi/sbml/unittests/test000046.cpp copasi/sbml/unittests/test000046.cpp.new + mv copasi/sbml/unittests/test000046.cpp.new copasi/sbml/unittests/test000046.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000045.cpp.new copasi/sbml/unittests/test000045.cpp + touch -r copasi/sbml/unittests/test000045.cpp copasi/sbml/unittests/test000045.cpp.new + mv copasi/sbml/unittests/test000045.cpp.new copasi/sbml/unittests/test000045.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000044.cpp.new copasi/sbml/unittests/test000044.cpp + touch -r copasi/sbml/unittests/test000044.cpp copasi/sbml/unittests/test000044.cpp.new + mv copasi/sbml/unittests/test000044.cpp.new copasi/sbml/unittests/test000044.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000043.cpp.new copasi/sbml/unittests/test000043.cpp + touch -r copasi/sbml/unittests/test000043.cpp copasi/sbml/unittests/test000043.cpp.new + mv copasi/sbml/unittests/test000043.cpp.new copasi/sbml/unittests/test000043.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000042.cpp.new copasi/sbml/unittests/test000042.cpp + touch -r copasi/sbml/unittests/test000042.cpp copasi/sbml/unittests/test000042.cpp.new + mv copasi/sbml/unittests/test000042.cpp.new copasi/sbml/unittests/test000042.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000041.cpp.new copasi/sbml/unittests/test000041.cpp + touch -r copasi/sbml/unittests/test000041.cpp copasi/sbml/unittests/test000041.cpp.new + mv copasi/sbml/unittests/test000041.cpp.new copasi/sbml/unittests/test000041.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000040.cpp.new copasi/sbml/unittests/test000040.cpp + touch -r copasi/sbml/unittests/test000040.cpp copasi/sbml/unittests/test000040.cpp.new + mv copasi/sbml/unittests/test000040.cpp.new copasi/sbml/unittests/test000040.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000039.cpp.new copasi/sbml/unittests/test000039.cpp + touch -r copasi/sbml/unittests/test000039.cpp copasi/sbml/unittests/test000039.cpp.new + mv copasi/sbml/unittests/test000039.cpp.new copasi/sbml/unittests/test000039.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000038.cpp.new copasi/sbml/unittests/test000038.cpp + touch -r copasi/sbml/unittests/test000038.cpp copasi/sbml/unittests/test000038.cpp.new + mv copasi/sbml/unittests/test000038.cpp.new copasi/sbml/unittests/test000038.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000037.cpp.new copasi/sbml/unittests/test000037.cpp + touch -r copasi/sbml/unittests/test000037.cpp copasi/sbml/unittests/test000037.cpp.new + mv copasi/sbml/unittests/test000037.cpp.new copasi/sbml/unittests/test000037.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000036.cpp.new copasi/sbml/unittests/test000036.cpp + touch -r copasi/sbml/unittests/test000036.cpp copasi/sbml/unittests/test000036.cpp.new + mv copasi/sbml/unittests/test000036.cpp.new copasi/sbml/unittests/test000036.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000035.cpp.new copasi/sbml/unittests/test000035.cpp + touch -r copasi/sbml/unittests/test000035.cpp copasi/sbml/unittests/test000035.cpp.new + mv copasi/sbml/unittests/test000035.cpp.new copasi/sbml/unittests/test000035.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000034.cpp.new copasi/sbml/unittests/test000034.cpp + touch -r copasi/sbml/unittests/test000034.cpp copasi/sbml/unittests/test000034.cpp.new + mv copasi/sbml/unittests/test000034.cpp.new copasi/sbml/unittests/test000034.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000033.cpp.new copasi/sbml/unittests/test000033.cpp + touch -r copasi/sbml/unittests/test000033.cpp copasi/sbml/unittests/test000033.cpp.new + mv copasi/sbml/unittests/test000033.cpp.new copasi/sbml/unittests/test000033.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000032.cpp.new copasi/sbml/unittests/test000032.cpp + touch -r copasi/sbml/unittests/test000032.cpp copasi/sbml/unittests/test000032.cpp.new + mv copasi/sbml/unittests/test000032.cpp.new copasi/sbml/unittests/test000032.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000031.cpp.new copasi/sbml/unittests/test000031.cpp + touch -r copasi/sbml/unittests/test000031.cpp copasi/sbml/unittests/test000031.cpp.new + mv copasi/sbml/unittests/test000031.cpp.new copasi/sbml/unittests/test000031.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000030.cpp.new copasi/sbml/unittests/test000030.cpp + touch -r copasi/sbml/unittests/test000030.cpp copasi/sbml/unittests/test000030.cpp.new + mv copasi/sbml/unittests/test000030.cpp.new copasi/sbml/unittests/test000030.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000029.cpp.new copasi/sbml/unittests/test000029.cpp + touch -r copasi/sbml/unittests/test000029.cpp copasi/sbml/unittests/test000029.cpp.new + mv copasi/sbml/unittests/test000029.cpp.new copasi/sbml/unittests/test000029.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000028.cpp.new copasi/sbml/unittests/test000028.cpp + touch -r copasi/sbml/unittests/test000028.cpp copasi/sbml/unittests/test000028.cpp.new + mv copasi/sbml/unittests/test000028.cpp.new copasi/sbml/unittests/test000028.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000027.cpp.new copasi/sbml/unittests/test000027.cpp + touch -r copasi/sbml/unittests/test000027.cpp copasi/sbml/unittests/test000027.cpp.new + mv copasi/sbml/unittests/test000027.cpp.new copasi/sbml/unittests/test000027.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000026.cpp.new copasi/sbml/unittests/test000026.cpp + touch -r copasi/sbml/unittests/test000026.cpp copasi/sbml/unittests/test000026.cpp.new + mv copasi/sbml/unittests/test000026.cpp.new copasi/sbml/unittests/test000026.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000025.cpp.new copasi/sbml/unittests/test000025.cpp + touch -r copasi/sbml/unittests/test000025.cpp copasi/sbml/unittests/test000025.cpp.new + mv copasi/sbml/unittests/test000025.cpp.new copasi/sbml/unittests/test000025.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000024.cpp.new copasi/sbml/unittests/test000024.cpp + touch -r copasi/sbml/unittests/test000024.cpp copasi/sbml/unittests/test000024.cpp.new + mv copasi/sbml/unittests/test000024.cpp.new copasi/sbml/unittests/test000024.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000023.cpp.new copasi/sbml/unittests/test000023.cpp + touch -r copasi/sbml/unittests/test000023.cpp copasi/sbml/unittests/test000023.cpp.new + mv copasi/sbml/unittests/test000023.cpp.new copasi/sbml/unittests/test000023.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000022.cpp.new copasi/sbml/unittests/test000022.cpp + touch -r copasi/sbml/unittests/test000022.cpp copasi/sbml/unittests/test000022.cpp.new + mv copasi/sbml/unittests/test000022.cpp.new copasi/sbml/unittests/test000022.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000021.cpp.new copasi/sbml/unittests/test000021.cpp + touch -r copasi/sbml/unittests/test000021.cpp copasi/sbml/unittests/test000021.cpp.new + mv copasi/sbml/unittests/test000021.cpp.new copasi/sbml/unittests/test000021.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000020.cpp.new copasi/sbml/unittests/test000020.cpp + touch -r copasi/sbml/unittests/test000020.cpp copasi/sbml/unittests/test000020.cpp.new + mv copasi/sbml/unittests/test000020.cpp.new copasi/sbml/unittests/test000020.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000019.cpp.new copasi/sbml/unittests/test000019.cpp + touch -r copasi/sbml/unittests/test000019.cpp copasi/sbml/unittests/test000019.cpp.new + mv copasi/sbml/unittests/test000019.cpp.new copasi/sbml/unittests/test000019.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000018.cpp.new copasi/sbml/unittests/test000018.cpp + touch -r copasi/sbml/unittests/test000018.cpp copasi/sbml/unittests/test000018.cpp.new + mv copasi/sbml/unittests/test000018.cpp.new copasi/sbml/unittests/test000018.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000017.cpp.new copasi/sbml/unittests/test000017.cpp + touch -r copasi/sbml/unittests/test000017.cpp copasi/sbml/unittests/test000017.cpp.new + mv copasi/sbml/unittests/test000017.cpp.new copasi/sbml/unittests/test000017.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000016.cpp.new copasi/sbml/unittests/test000016.cpp + touch -r copasi/sbml/unittests/test000016.cpp copasi/sbml/unittests/test000016.cpp.new + mv copasi/sbml/unittests/test000016.cpp.new copasi/sbml/unittests/test000016.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000015.cpp.new copasi/sbml/unittests/test000015.cpp + touch -r copasi/sbml/unittests/test000015.cpp copasi/sbml/unittests/test000015.cpp.new + mv copasi/sbml/unittests/test000015.cpp.new copasi/sbml/unittests/test000015.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000014.cpp.new copasi/sbml/unittests/test000014.cpp + touch -r copasi/sbml/unittests/test000014.cpp copasi/sbml/unittests/test000014.cpp.new + mv copasi/sbml/unittests/test000014.cpp.new copasi/sbml/unittests/test000014.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000013.cpp.new copasi/sbml/unittests/test000013.cpp + touch -r copasi/sbml/unittests/test000013.cpp copasi/sbml/unittests/test000013.cpp.new + mv copasi/sbml/unittests/test000013.cpp.new copasi/sbml/unittests/test000013.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000012.cpp.new copasi/sbml/unittests/test000012.cpp + touch -r copasi/sbml/unittests/test000012.cpp copasi/sbml/unittests/test000012.cpp.new + mv copasi/sbml/unittests/test000012.cpp.new copasi/sbml/unittests/test000012.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000011.cpp.new copasi/sbml/unittests/test000011.cpp + touch -r copasi/sbml/unittests/test000011.cpp copasi/sbml/unittests/test000011.cpp.new + mv copasi/sbml/unittests/test000011.cpp.new copasi/sbml/unittests/test000011.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000010.cpp.new copasi/sbml/unittests/test000010.cpp + touch -r copasi/sbml/unittests/test000010.cpp copasi/sbml/unittests/test000010.cpp.new + mv copasi/sbml/unittests/test000010.cpp.new copasi/sbml/unittests/test000010.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000009.cpp.new copasi/sbml/unittests/test000009.cpp + touch -r copasi/sbml/unittests/test000009.cpp copasi/sbml/unittests/test000009.cpp.new + mv copasi/sbml/unittests/test000009.cpp.new copasi/sbml/unittests/test000009.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000008.cpp.new copasi/sbml/unittests/test000008.cpp + touch -r copasi/sbml/unittests/test000008.cpp copasi/sbml/unittests/test000008.cpp.new + mv copasi/sbml/unittests/test000008.cpp.new copasi/sbml/unittests/test000008.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000007.cpp.new copasi/sbml/unittests/test000007.cpp + touch -r copasi/sbml/unittests/test000007.cpp copasi/sbml/unittests/test000007.cpp.new + mv copasi/sbml/unittests/test000007.cpp.new copasi/sbml/unittests/test000007.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000006.cpp.new copasi/sbml/unittests/test000006.cpp + touch -r copasi/sbml/unittests/test000006.cpp copasi/sbml/unittests/test000006.cpp.new + mv copasi/sbml/unittests/test000006.cpp.new copasi/sbml/unittests/test000006.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000005.cpp.new copasi/sbml/unittests/test000005.cpp + touch -r copasi/sbml/unittests/test000005.cpp copasi/sbml/unittests/test000005.cpp.new + mv copasi/sbml/unittests/test000005.cpp.new copasi/sbml/unittests/test000005.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000004.cpp.new copasi/sbml/unittests/test000004.cpp + touch -r copasi/sbml/unittests/test000004.cpp copasi/sbml/unittests/test000004.cpp.new + mv copasi/sbml/unittests/test000004.cpp.new copasi/sbml/unittests/test000004.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000003.cpp.new copasi/sbml/unittests/test000003.cpp + touch -r copasi/sbml/unittests/test000003.cpp copasi/sbml/unittests/test000003.cpp.new + mv copasi/sbml/unittests/test000003.cpp.new copasi/sbml/unittests/test000003.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000002.cpp.new copasi/sbml/unittests/test000002.cpp + touch -r copasi/sbml/unittests/test000002.cpp copasi/sbml/unittests/test000002.cpp.new + mv copasi/sbml/unittests/test000002.cpp.new copasi/sbml/unittests/test000002.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test000001.cpp.new copasi/sbml/unittests/test000001.cpp + touch -r copasi/sbml/unittests/test000001.cpp copasi/sbml/unittests/test000001.cpp.new + mv copasi/sbml/unittests/test000001.cpp.new copasi/sbml/unittests/test000001.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/unittests/test.cpp.new copasi/sbml/unittests/test.cpp + touch -r copasi/sbml/unittests/test.cpp copasi/sbml/unittests/test.cpp.new + mv copasi/sbml/unittests/test.cpp.new copasi/sbml/unittests/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/StdException.cpp.new copasi/sbml/StdException.cpp + touch -r copasi/sbml/StdException.cpp copasi/sbml/StdException.cpp.new + mv copasi/sbml/StdException.cpp.new copasi/sbml/StdException.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLUtils.cpp.new copasi/sbml/SBMLUtils.cpp + touch -r copasi/sbml/SBMLUtils.cpp copasi/sbml/SBMLUtils.cpp.new + mv copasi/sbml/SBMLUtils.cpp.new copasi/sbml/SBMLUtils.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLUnitSupport.cpp.new copasi/sbml/SBMLUnitSupport.cpp + touch -r copasi/sbml/SBMLUnitSupport.cpp copasi/sbml/SBMLUnitSupport.cpp.new + mv copasi/sbml/SBMLUnitSupport.cpp.new copasi/sbml/SBMLUnitSupport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLReference.cpp.new copasi/sbml/SBMLReference.cpp + touch -r copasi/sbml/SBMLReference.cpp copasi/sbml/SBMLReference.cpp.new + mv copasi/sbml/SBMLReference.cpp.new copasi/sbml/SBMLReference.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLIncompatibility.cpp.new copasi/sbml/SBMLIncompatibility.cpp + touch -r copasi/sbml/SBMLIncompatibility.cpp copasi/sbml/SBMLIncompatibility.cpp.new + mv copasi/sbml/SBMLIncompatibility.cpp.new copasi/sbml/SBMLIncompatibility.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/SBMLImporter.cpp.new copasi/sbml/SBMLImporter.cpp + touch -r copasi/sbml/SBMLImporter.cpp copasi/sbml/SBMLImporter.cpp.new + mv copasi/sbml/SBMLImporter.cpp.new copasi/sbml/SBMLImporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/ConverterASTNode.cpp.new copasi/sbml/ConverterASTNode.cpp + touch -r copasi/sbml/ConverterASTNode.cpp copasi/sbml/ConverterASTNode.cpp.new + mv copasi/sbml/ConverterASTNode.cpp.new copasi/sbml/ConverterASTNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/CSBMLExporter.cpp.new copasi/sbml/CSBMLExporter.cpp + touch -r copasi/sbml/CSBMLExporter.cpp copasi/sbml/CSBMLExporter.cpp.new + mv copasi/sbml/CSBMLExporter.cpp.new copasi/sbml/CSBMLExporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/sbml/CCellDesignerImporter.cpp.new copasi/sbml/CCellDesignerImporter.cpp + touch -r copasi/sbml/CCellDesignerImporter.cpp copasi/sbml/CCellDesignerImporter.cpp.new + mv copasi/sbml/CCellDesignerImporter.cpp.new copasi/sbml/CCellDesignerImporter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/resourcesUI/CQIconResource.cpp.new copasi/resourcesUI/CQIconResource.cpp + touch -r copasi/resourcesUI/CQIconResource.cpp copasi/resourcesUI/CQIconResource.cpp.new + mv copasi/resourcesUI/CQIconResource.cpp.new copasi/resourcesUI/CQIconResource.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReportDefinitionVector.cpp.new copasi/report/CReportDefinitionVector.cpp + touch -r copasi/report/CReportDefinitionVector.cpp copasi/report/CReportDefinitionVector.cpp.new + mv copasi/report/CReportDefinitionVector.cpp.new copasi/report/CReportDefinitionVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReportDefinition.cpp.new copasi/report/CReportDefinition.cpp + touch -r copasi/report/CReportDefinition.cpp copasi/report/CReportDefinition.cpp.new + mv copasi/report/CReportDefinition.cpp.new copasi/report/CReportDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReportBody.cpp.new copasi/report/CReportBody.cpp + touch -r copasi/report/CReportBody.cpp copasi/report/CReportBody.cpp.new + mv copasi/report/CReportBody.cpp.new copasi/report/CReportBody.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CReport.cpp.new copasi/report/CReport.cpp + touch -r copasi/report/CReport.cpp copasi/report/CReport.cpp.new + mv copasi/report/CReport.cpp.new copasi/report/CReport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/COutputAssistant.cpp.new copasi/report/COutputAssistant.cpp + touch -r copasi/report/COutputAssistant.cpp copasi/report/COutputAssistant.cpp.new + mv copasi/report/COutputAssistant.cpp.new copasi/report/COutputAssistant.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CKeyFactory.cpp.new copasi/report/CKeyFactory.cpp + touch -r copasi/report/CKeyFactory.cpp copasi/report/CKeyFactory.cpp.new + mv copasi/report/CKeyFactory.cpp.new copasi/report/CKeyFactory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/report/CDataHandler.cpp.new copasi/report/CDataHandler.cpp + touch -r copasi/report/CDataHandler.cpp copasi/report/CDataHandler.cpp.new + mv copasi/report/CDataHandler.cpp.new copasi/report/CDataHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/Cr250.cpp.new copasi/randomGenerator/Cr250.cpp + touch -r copasi/randomGenerator/Cr250.cpp copasi/randomGenerator/Cr250.cpp.new + mv copasi/randomGenerator/Cr250.cpp.new copasi/randomGenerator/Cr250.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/Cmt19937.cpp.new copasi/randomGenerator/Cmt19937.cpp + touch -r copasi/randomGenerator/Cmt19937.cpp copasi/randomGenerator/Cmt19937.cpp.new + mv copasi/randomGenerator/Cmt19937.cpp.new copasi/randomGenerator/Cmt19937.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/CRandom.cpp.new copasi/randomGenerator/CRandom.cpp + touch -r copasi/randomGenerator/CRandom.cpp copasi/randomGenerator/CRandom.cpp.new + mv copasi/randomGenerator/CRandom.cpp.new copasi/randomGenerator/CRandom.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/randomGenerator/CPermutation.cpp.new copasi/randomGenerator/CPermutation.cpp + touch -r copasi/randomGenerator/CPermutation.cpp copasi/randomGenerator/CPermutation.cpp.new + mv copasi/randomGenerator/CPermutation.cpp.new copasi/randomGenerator/CPermutation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQZoomableView.cpp.new copasi/qlayout/CQZoomableView.cpp + touch -r copasi/qlayout/CQZoomableView.cpp copasi/qlayout/CQZoomableView.cpp.new + mv copasi/qlayout/CQZoomableView.cpp.new copasi/qlayout/CQZoomableView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQStyledGraphicsItem.cpp.new copasi/qlayout/CQStyledGraphicsItem.cpp + touch -r copasi/qlayout/CQStyledGraphicsItem.cpp copasi/qlayout/CQStyledGraphicsItem.cpp.new + mv copasi/qlayout/CQStyledGraphicsItem.cpp.new copasi/qlayout/CQStyledGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQRoundedRect.cpp.new copasi/qlayout/CQRoundedRect.cpp + touch -r copasi/qlayout/CQRoundedRect.cpp copasi/qlayout/CQRoundedRect.cpp.new + mv copasi/qlayout/CQRoundedRect.cpp.new copasi/qlayout/CQRoundedRect.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQRenderConverter.cpp.new copasi/qlayout/CQRenderConverter.cpp + touch -r copasi/qlayout/CQRenderConverter.cpp copasi/qlayout/CQRenderConverter.cpp.new + mv copasi/qlayout/CQRenderConverter.cpp.new copasi/qlayout/CQRenderConverter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQLayoutView.cpp.new copasi/qlayout/CQLayoutView.cpp + touch -r copasi/qlayout/CQLayoutView.cpp copasi/qlayout/CQLayoutView.cpp.new + mv copasi/qlayout/CQLayoutView.cpp.new copasi/qlayout/CQLayoutView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQLayoutScene.cpp.new copasi/qlayout/CQLayoutScene.cpp + touch -r copasi/qlayout/CQLayoutScene.cpp copasi/qlayout/CQLayoutScene.cpp.new + mv copasi/qlayout/CQLayoutScene.cpp.new copasi/qlayout/CQLayoutScene.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQLabelGraphicsItem.cpp.new copasi/qlayout/CQLabelGraphicsItem.cpp + touch -r copasi/qlayout/CQLabelGraphicsItem.cpp copasi/qlayout/CQLabelGraphicsItem.cpp.new + mv copasi/qlayout/CQLabelGraphicsItem.cpp.new copasi/qlayout/CQLabelGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQElementProperties.cpp.new copasi/qlayout/CQElementProperties.cpp + touch -r copasi/qlayout/CQElementProperties.cpp copasi/qlayout/CQElementProperties.cpp.new + mv copasi/qlayout/CQElementProperties.cpp.new copasi/qlayout/CQElementProperties.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQEffectDescriptionEdit.cpp.new copasi/qlayout/CQEffectDescriptionEdit.cpp + touch -r copasi/qlayout/CQEffectDescriptionEdit.cpp copasi/qlayout/CQEffectDescriptionEdit.cpp.new + mv copasi/qlayout/CQEffectDescriptionEdit.cpp.new copasi/qlayout/CQEffectDescriptionEdit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQEffectDescription.cpp.new copasi/qlayout/CQEffectDescription.cpp + touch -r copasi/qlayout/CQEffectDescription.cpp copasi/qlayout/CQEffectDescription.cpp.new + mv copasi/qlayout/CQEffectDescription.cpp.new copasi/qlayout/CQEffectDescription.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQCopasiGraphicsItem.cpp.new copasi/qlayout/CQCopasiGraphicsItem.cpp + touch -r copasi/qlayout/CQCopasiGraphicsItem.cpp copasi/qlayout/CQCopasiGraphicsItem.cpp.new + mv copasi/qlayout/CQCopasiGraphicsItem.cpp.new copasi/qlayout/CQCopasiGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQCopasiEffect.cpp.new copasi/qlayout/CQCopasiEffect.cpp + touch -r copasi/qlayout/CQCopasiEffect.cpp copasi/qlayout/CQCopasiEffect.cpp.new + mv copasi/qlayout/CQCopasiEffect.cpp.new copasi/qlayout/CQCopasiEffect.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQCopasiAnimation.cpp.new copasi/qlayout/CQCopasiAnimation.cpp + touch -r copasi/qlayout/CQCopasiAnimation.cpp copasi/qlayout/CQCopasiAnimation.cpp.new + mv copasi/qlayout/CQCopasiAnimation.cpp.new copasi/qlayout/CQCopasiAnimation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQConnectionGraphicsItem.cpp.new copasi/qlayout/CQConnectionGraphicsItem.cpp + touch -r copasi/qlayout/CQConnectionGraphicsItem.cpp copasi/qlayout/CQConnectionGraphicsItem.cpp.new + mv copasi/qlayout/CQConnectionGraphicsItem.cpp.new copasi/qlayout/CQConnectionGraphicsItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQAnimationWindow.cpp.new copasi/qlayout/CQAnimationWindow.cpp + touch -r copasi/qlayout/CQAnimationWindow.cpp copasi/qlayout/CQAnimationWindow.cpp.new + mv copasi/qlayout/CQAnimationWindow.cpp.new copasi/qlayout/CQAnimationWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQAnimationSettingsEditor.cpp.new copasi/qlayout/CQAnimationSettingsEditor.cpp + touch -r copasi/qlayout/CQAnimationSettingsEditor.cpp copasi/qlayout/CQAnimationSettingsEditor.cpp.new + mv copasi/qlayout/CQAnimationSettingsEditor.cpp.new copasi/qlayout/CQAnimationSettingsEditor.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/qlayout/CQAnimationControls.cpp.new copasi/qlayout/CQAnimationControls.cpp + touch -r copasi/qlayout/CQAnimationControls.cpp copasi/qlayout/CQAnimationControls.cpp.new + mv copasi/qlayout/CQAnimationControls.cpp.new copasi/qlayout/CQAnimationControls.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/pvmtest/pvmtest.cpp.new copasi/pvmtest/pvmtest.cpp + touch -r copasi/pvmtest/pvmtest.cpp copasi/pvmtest/pvmtest.cpp.new + mv copasi/pvmtest/pvmtest.cpp.new copasi/pvmtest/pvmtest.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/scrollzoomer.cpp.new copasi/plotUI/scrollzoomer.cpp + touch -r copasi/plotUI/scrollzoomer.cpp copasi/plotUI/scrollzoomer.cpp.new + mv copasi/plotUI/scrollzoomer.cpp.new copasi/plotUI/scrollzoomer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/scrollbar.cpp.new copasi/plotUI/scrollbar.cpp + touch -r copasi/plotUI/scrollbar.cpp copasi/plotUI/scrollbar.cpp.new + mv copasi/plotUI/scrollbar.cpp.new copasi/plotUI/scrollbar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/plotwindow.cpp.new copasi/plotUI/plotwindow.cpp + touch -r copasi/plotUI/plotwindow.cpp copasi/plotUI/plotwindow.cpp.new + mv copasi/plotUI/plotwindow.cpp.new copasi/plotUI/plotwindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/curve2dwidget.cpp.new copasi/plotUI/curve2dwidget.cpp + touch -r copasi/plotUI/curve2dwidget.cpp copasi/plotUI/curve2dwidget.cpp.new + mv copasi/plotUI/curve2dwidget.cpp.new copasi/plotUI/curve2dwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/HistoWidget.cpp.new copasi/plotUI/HistoWidget.cpp + touch -r copasi/plotUI/HistoWidget.cpp copasi/plotUI/HistoWidget.cpp.new + mv copasi/plotUI/HistoWidget.cpp.new copasi/plotUI/HistoWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CSpectorgramData.cpp.new copasi/plotUI/CSpectorgramData.cpp + touch -r copasi/plotUI/CSpectorgramData.cpp copasi/plotUI/CSpectorgramData.cpp.new + mv copasi/plotUI/CSpectorgramData.cpp.new copasi/plotUI/CSpectorgramData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQwtPlot.cpp.new copasi/plotUI/CQwtPlot.cpp + touch -r copasi/plotUI/CQwtPlot.cpp copasi/plotUI/CQwtPlot.cpp.new + mv copasi/plotUI/CQwtPlot.cpp.new copasi/plotUI/CQwtPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQtChartsPlot.cpp.new copasi/plotUI/CQtChartsPlot.cpp + touch -r copasi/plotUI/CQtChartsPlot.cpp copasi/plotUI/CQtChartsPlot.cpp.new + mv copasi/plotUI/CQtChartsPlot.cpp.new copasi/plotUI/CQtChartsPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQSpectogramWidget.cpp.new copasi/plotUI/CQSpectogramWidget.cpp + touch -r copasi/plotUI/CQSpectogramWidget.cpp copasi/plotUI/CQSpectogramWidget.cpp.new + mv copasi/plotUI/CQSpectogramWidget.cpp.new copasi/plotUI/CQSpectogramWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQPlotSubwidget.cpp.new copasi/plotUI/CQPlotSubwidget.cpp + touch -r copasi/plotUI/CQPlotSubwidget.cpp copasi/plotUI/CQPlotSubwidget.cpp.new + mv copasi/plotUI/CQPlotSubwidget.cpp.new copasi/plotUI/CQPlotSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQPlotEditWidget.cpp.new copasi/plotUI/CQPlotEditWidget.cpp + touch -r copasi/plotUI/CQPlotEditWidget.cpp copasi/plotUI/CQPlotEditWidget.cpp.new + mv copasi/plotUI/CQPlotEditWidget.cpp.new copasi/plotUI/CQPlotEditWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQPlotColors.cpp.new copasi/plotUI/CQPlotColors.cpp + touch -r copasi/plotUI/CQPlotColors.cpp copasi/plotUI/CQPlotColors.cpp.new + mv copasi/plotUI/CQPlotColors.cpp.new copasi/plotUI/CQPlotColors.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQMarchingSquares.cpp.new copasi/plotUI/CQMarchingSquares.cpp + touch -r copasi/plotUI/CQMarchingSquares.cpp copasi/plotUI/CQMarchingSquares.cpp.new + mv copasi/plotUI/CQMarchingSquares.cpp.new copasi/plotUI/CQMarchingSquares.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQExtender.cpp.new copasi/plotUI/CQExtender.cpp + touch -r copasi/plotUI/CQExtender.cpp copasi/plotUI/CQExtender.cpp.new + mv copasi/plotUI/CQExtender.cpp.new copasi/plotUI/CQExtender.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQDataVizPlot.cpp.new copasi/plotUI/CQDataVizPlot.cpp + touch -r copasi/plotUI/CQDataVizPlot.cpp copasi/plotUI/CQDataVizPlot.cpp.new + mv copasi/plotUI/CQDataVizPlot.cpp.new copasi/plotUI/CQDataVizPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQCustomPlot.cpp.new copasi/plotUI/CQCustomPlot.cpp + touch -r copasi/plotUI/CQCustomPlot.cpp copasi/plotUI/CQCustomPlot.cpp.new + mv copasi/plotUI/CQCustomPlot.cpp.new copasi/plotUI/CQCustomPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CQAdvancedPlotSettings.cpp.new copasi/plotUI/CQAdvancedPlotSettings.cpp + touch -r copasi/plotUI/CQAdvancedPlotSettings.cpp copasi/plotUI/CQAdvancedPlotSettings.cpp.new + mv copasi/plotUI/CQAdvancedPlotSettings.cpp.new copasi/plotUI/CQAdvancedPlotSettings.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CPlotSpectogram.cpp.new copasi/plotUI/CPlotSpectogram.cpp + touch -r copasi/plotUI/CPlotSpectogram.cpp copasi/plotUI/CPlotSpectogram.cpp.new + mv copasi/plotUI/CPlotSpectogram.cpp.new copasi/plotUI/CPlotSpectogram.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CPlotInterface.cpp.new copasi/plotUI/CPlotInterface.cpp + touch -r copasi/plotUI/CPlotInterface.cpp copasi/plotUI/CPlotInterface.cpp.new + mv copasi/plotUI/CPlotInterface.cpp.new copasi/plotUI/CPlotInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/COutputHandlerPlot.cpp.new copasi/plotUI/COutputHandlerPlot.cpp + touch -r copasi/plotUI/COutputHandlerPlot.cpp copasi/plotUI/COutputHandlerPlot.cpp.new + mv copasi/plotUI/COutputHandlerPlot.cpp.new copasi/plotUI/COutputHandlerPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CLinearColorMap.cpp.new copasi/plotUI/CLinearColorMap.cpp + touch -r copasi/plotUI/CLinearColorMap.cpp copasi/plotUI/CLinearColorMap.cpp.new + mv copasi/plotUI/CLinearColorMap.cpp.new copasi/plotUI/CLinearColorMap.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CHistoCurveData.cpp.new copasi/plotUI/CHistoCurveData.cpp + touch -r copasi/plotUI/CHistoCurveData.cpp copasi/plotUI/CHistoCurveData.cpp.new + mv copasi/plotUI/CHistoCurveData.cpp.new copasi/plotUI/CHistoCurveData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/CBandedGraphData.cpp.new copasi/plotUI/CBandedGraphData.cpp + touch -r copasi/plotUI/CBandedGraphData.cpp copasi/plotUI/CBandedGraphData.cpp.new + mv copasi/plotUI/CBandedGraphData.cpp.new copasi/plotUI/CBandedGraphData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/C2DPlotCurve.cpp.new copasi/plotUI/C2DPlotCurve.cpp + touch -r copasi/plotUI/C2DPlotCurve.cpp copasi/plotUI/C2DPlotCurve.cpp.new + mv copasi/plotUI/C2DPlotCurve.cpp.new copasi/plotUI/C2DPlotCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/C2DCurveData.cpp.new copasi/plotUI/C2DCurveData.cpp + touch -r copasi/plotUI/C2DCurveData.cpp copasi/plotUI/C2DCurveData.cpp.new + mv copasi/plotUI/C2DCurveData.cpp.new copasi/plotUI/C2DCurveData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plotUI/BandedGraphWidget.cpp.new copasi/plotUI/BandedGraphWidget.cpp + touch -r copasi/plotUI/BandedGraphWidget.cpp copasi/plotUI/BandedGraphWidget.cpp.new + mv copasi/plotUI/BandedGraphWidget.cpp.new copasi/plotUI/BandedGraphWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/CPlotSpecification.cpp.new copasi/plot/CPlotSpecification.cpp + touch -r copasi/plot/CPlotSpecification.cpp copasi/plot/CPlotSpecification.cpp.new + mv copasi/plot/CPlotSpecification.cpp.new copasi/plot/CPlotSpecification.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/CPlotItem.cpp.new copasi/plot/CPlotItem.cpp + touch -r copasi/plot/CPlotItem.cpp copasi/plot/CPlotItem.cpp.new + mv copasi/plot/CPlotItem.cpp.new copasi/plot/CPlotItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/CPlotColors.cpp.new copasi/plot/CPlotColors.cpp + touch -r copasi/plot/CPlotColors.cpp copasi/plot/CPlotColors.cpp.new + mv copasi/plot/CPlotColors.cpp.new copasi/plot/CPlotColors.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/plot/COutputDefinitionVector.cpp.new copasi/plot/COutputDefinitionVector.cpp + touch -r copasi/plot/COutputDefinitionVector.cpp copasi/plot/COutputDefinitionVector.cpp.new + mv copasi/plot/COutputDefinitionVector.cpp.new copasi/plot/COutputDefinitionVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CFitTask.cpp.new copasi/parameterFitting/CFitTask.cpp + touch -r copasi/parameterFitting/CFitTask.cpp copasi/parameterFitting/CFitTask.cpp.new + mv copasi/parameterFitting/CFitTask.cpp.new copasi/parameterFitting/CFitTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CFitProblem.cpp.new copasi/parameterFitting/CFitProblem.cpp + touch -r copasi/parameterFitting/CFitProblem.cpp copasi/parameterFitting/CFitProblem.cpp.new + mv copasi/parameterFitting/CFitProblem.cpp.new copasi/parameterFitting/CFitProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CFitItem.cpp.new copasi/parameterFitting/CFitItem.cpp + touch -r copasi/parameterFitting/CFitItem.cpp copasi/parameterFitting/CFitItem.cpp.new + mv copasi/parameterFitting/CFitItem.cpp.new copasi/parameterFitting/CFitItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperimentSet.cpp.new copasi/parameterFitting/CExperimentSet.cpp + touch -r copasi/parameterFitting/CExperimentSet.cpp copasi/parameterFitting/CExperimentSet.cpp.new + mv copasi/parameterFitting/CExperimentSet.cpp.new copasi/parameterFitting/CExperimentSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperimentObjectMap.cpp.new copasi/parameterFitting/CExperimentObjectMap.cpp + touch -r copasi/parameterFitting/CExperimentObjectMap.cpp copasi/parameterFitting/CExperimentObjectMap.cpp.new + mv copasi/parameterFitting/CExperimentObjectMap.cpp.new copasi/parameterFitting/CExperimentObjectMap.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperimentFileInfo.cpp.new copasi/parameterFitting/CExperimentFileInfo.cpp + touch -r copasi/parameterFitting/CExperimentFileInfo.cpp copasi/parameterFitting/CExperimentFileInfo.cpp.new + mv copasi/parameterFitting/CExperimentFileInfo.cpp.new copasi/parameterFitting/CExperimentFileInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/parameterFitting/CExperiment.cpp.new copasi/parameterFitting/CExperiment.cpp + touch -r copasi/parameterFitting/CExperiment.cpp copasi/parameterFitting/CExperiment.cpp.new + mv copasi/parameterFitting/CExperiment.cpp.new copasi/parameterFitting/CExperiment.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/output/COutputHandler.cpp.new copasi/output/COutputHandler.cpp + touch -r copasi/output/COutputHandler.cpp copasi/output/COutputHandler.cpp.new + mv copasi/output/COutputHandler.cpp.new copasi/output/COutputHandler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationTask.cpp.new copasi/oscillation/COscillationTask.cpp + touch -r copasi/oscillation/COscillationTask.cpp copasi/oscillation/COscillationTask.cpp.new + mv copasi/oscillation/COscillationTask.cpp.new copasi/oscillation/COscillationTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationProblem.cpp.new copasi/oscillation/COscillationProblem.cpp + touch -r copasi/oscillation/COscillationProblem.cpp copasi/oscillation/COscillationProblem.cpp.new + mv copasi/oscillation/COscillationProblem.cpp.new copasi/oscillation/COscillationProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationMethodIntegrate.cpp.new copasi/oscillation/COscillationMethodIntegrate.cpp + touch -r copasi/oscillation/COscillationMethodIntegrate.cpp copasi/oscillation/COscillationMethodIntegrate.cpp.new + mv copasi/oscillation/COscillationMethodIntegrate.cpp.new copasi/oscillation/COscillationMethodIntegrate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/oscillation/COscillationMethod.cpp.new copasi/oscillation/COscillationMethod.cpp + touch -r copasi/oscillation/COscillationMethod.cpp copasi/oscillation/COscillationMethod.cpp.new + mv copasi/oscillation/COscillationMethod.cpp.new copasi/oscillation/COscillationMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/FminBrent.cpp.new copasi/optimization/FminBrent.cpp + touch -r copasi/optimization/FminBrent.cpp copasi/optimization/FminBrent.cpp.new + mv copasi/optimization/FminBrent.cpp.new copasi/optimization/FminBrent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CTruncatedNewton.cpp.new copasi/optimization/CTruncatedNewton.cpp + touch -r copasi/optimization/CTruncatedNewton.cpp copasi/optimization/CTruncatedNewton.cpp.new + mv copasi/optimization/CTruncatedNewton.cpp.new copasi/optimization/CTruncatedNewton.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CRealProblem.cpp.new copasi/optimization/CRealProblem.cpp + touch -r copasi/optimization/CRealProblem.cpp copasi/optimization/CRealProblem.cpp.new + mv copasi/optimization/CRealProblem.cpp.new copasi/optimization/CRealProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CRandomSearch.cpp.new copasi/optimization/CRandomSearch.cpp + touch -r copasi/optimization/CRandomSearch.cpp copasi/optimization/CRandomSearch.cpp.new + mv copasi/optimization/CRandomSearch.cpp.new copasi/optimization/CRandomSearch.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CPraxis.cpp.new copasi/optimization/CPraxis.cpp + touch -r copasi/optimization/CPraxis.cpp copasi/optimization/CPraxis.cpp.new + mv copasi/optimization/CPraxis.cpp.new copasi/optimization/CPraxis.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptTask.cpp.new copasi/optimization/COptTask.cpp + touch -r copasi/optimization/COptTask.cpp copasi/optimization/COptTask.cpp.new + mv copasi/optimization/COptTask.cpp.new copasi/optimization/COptTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptProblem.cpp.new copasi/optimization/COptProblem.cpp + touch -r copasi/optimization/COptProblem.cpp copasi/optimization/COptProblem.cpp.new + mv copasi/optimization/COptProblem.cpp.new copasi/optimization/COptProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptPopulationMethod.cpp.new copasi/optimization/COptPopulationMethod.cpp + touch -r copasi/optimization/COptPopulationMethod.cpp copasi/optimization/COptPopulationMethod.cpp.new + mv copasi/optimization/COptPopulationMethod.cpp.new copasi/optimization/COptPopulationMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodTruncatedNewton.cpp.new copasi/optimization/COptMethodTruncatedNewton.cpp + touch -r copasi/optimization/COptMethodTruncatedNewton.cpp copasi/optimization/COptMethodTruncatedNewton.cpp.new + mv copasi/optimization/COptMethodTruncatedNewton.cpp.new copasi/optimization/COptMethodTruncatedNewton.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSteepestDescent.cpp.new copasi/optimization/COptMethodSteepestDescent.cpp + touch -r copasi/optimization/COptMethodSteepestDescent.cpp copasi/optimization/COptMethodSteepestDescent.cpp.new + mv copasi/optimization/COptMethodSteepestDescent.cpp.new copasi/optimization/COptMethodSteepestDescent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodStatistics.cpp.new copasi/optimization/COptMethodStatistics.cpp + touch -r copasi/optimization/COptMethodStatistics.cpp copasi/optimization/COptMethodStatistics.cpp.new + mv copasi/optimization/COptMethodStatistics.cpp.new copasi/optimization/COptMethodStatistics.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSS.cpp.new copasi/optimization/COptMethodSS.cpp + touch -r copasi/optimization/COptMethodSS.cpp copasi/optimization/COptMethodSS.cpp.new + mv copasi/optimization/COptMethodSS.cpp.new copasi/optimization/COptMethodSS.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSRES.cpp.new copasi/optimization/COptMethodSRES.cpp + touch -r copasi/optimization/COptMethodSRES.cpp copasi/optimization/COptMethodSRES.cpp.new + mv copasi/optimization/COptMethodSRES.cpp.new copasi/optimization/COptMethodSRES.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodSA.cpp.new copasi/optimization/COptMethodSA.cpp + touch -r copasi/optimization/COptMethodSA.cpp copasi/optimization/COptMethodSA.cpp.new + mv copasi/optimization/COptMethodSA.cpp.new copasi/optimization/COptMethodSA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodPraxis.cpp.new copasi/optimization/COptMethodPraxis.cpp + touch -r copasi/optimization/COptMethodPraxis.cpp copasi/optimization/COptMethodPraxis.cpp.new + mv copasi/optimization/COptMethodPraxis.cpp.new copasi/optimization/COptMethodPraxis.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodPS.cpp.new copasi/optimization/COptMethodPS.cpp + touch -r copasi/optimization/COptMethodPS.cpp copasi/optimization/COptMethodPS.cpp.new + mv copasi/optimization/COptMethodPS.cpp.new copasi/optimization/COptMethodPS.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodNelderMead.cpp.new copasi/optimization/COptMethodNelderMead.cpp + touch -r copasi/optimization/COptMethodNelderMead.cpp copasi/optimization/COptMethodNelderMead.cpp.new + mv copasi/optimization/COptMethodNelderMead.cpp.new copasi/optimization/COptMethodNelderMead.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodNL2SOL.cpp.new copasi/optimization/COptMethodNL2SOL.cpp + touch -r copasi/optimization/COptMethodNL2SOL.cpp copasi/optimization/COptMethodNL2SOL.cpp.new + mv copasi/optimization/COptMethodNL2SOL.cpp.new copasi/optimization/COptMethodNL2SOL.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodLevenbergMarquardt.cpp.new copasi/optimization/COptMethodLevenbergMarquardt.cpp + touch -r copasi/optimization/COptMethodLevenbergMarquardt.cpp copasi/optimization/COptMethodLevenbergMarquardt.cpp.new + mv copasi/optimization/COptMethodLevenbergMarquardt.cpp.new copasi/optimization/COptMethodLevenbergMarquardt.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodHookeJeeves.cpp.new copasi/optimization/COptMethodHookeJeeves.cpp + touch -r copasi/optimization/COptMethodHookeJeeves.cpp copasi/optimization/COptMethodHookeJeeves.cpp.new + mv copasi/optimization/COptMethodHookeJeeves.cpp.new copasi/optimization/COptMethodHookeJeeves.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodGASR.cpp.new copasi/optimization/COptMethodGASR.cpp + touch -r copasi/optimization/COptMethodGASR.cpp copasi/optimization/COptMethodGASR.cpp.new + mv copasi/optimization/COptMethodGASR.cpp.new copasi/optimization/COptMethodGASR.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodGA.cpp.new copasi/optimization/COptMethodGA.cpp + touch -r copasi/optimization/COptMethodGA.cpp copasi/optimization/COptMethodGA.cpp.new + mv copasi/optimization/COptMethodGA.cpp.new copasi/optimization/COptMethodGA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodEP.cpp.new copasi/optimization/COptMethodEP.cpp + touch -r copasi/optimization/COptMethodEP.cpp copasi/optimization/COptMethodEP.cpp.new + mv copasi/optimization/COptMethodEP.cpp.new copasi/optimization/COptMethodEP.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodDE.cpp.new copasi/optimization/COptMethodDE.cpp + touch -r copasi/optimization/COptMethodDE.cpp copasi/optimization/COptMethodDE.cpp.new + mv copasi/optimization/COptMethodDE.cpp.new copasi/optimization/COptMethodDE.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethodCoranaWalk.cpp.new copasi/optimization/COptMethodCoranaWalk.cpp + touch -r copasi/optimization/COptMethodCoranaWalk.cpp copasi/optimization/COptMethodCoranaWalk.cpp.new + mv copasi/optimization/COptMethodCoranaWalk.cpp.new copasi/optimization/COptMethodCoranaWalk.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptMethod.cpp.new copasi/optimization/COptMethod.cpp + touch -r copasi/optimization/COptMethod.cpp copasi/optimization/COptMethod.cpp.new + mv copasi/optimization/COptMethod.cpp.new copasi/optimization/COptMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptLogItem.cpp.new copasi/optimization/COptLogItem.cpp + touch -r copasi/optimization/COptLogItem.cpp copasi/optimization/COptLogItem.cpp.new + mv copasi/optimization/COptLogItem.cpp.new copasi/optimization/COptLogItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptLogEntry.cpp.new copasi/optimization/COptLogEntry.cpp + touch -r copasi/optimization/COptLogEntry.cpp copasi/optimization/COptLogEntry.cpp.new + mv copasi/optimization/COptLogEntry.cpp.new copasi/optimization/COptLogEntry.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptLog.cpp.new copasi/optimization/COptLog.cpp + touch -r copasi/optimization/COptLog.cpp copasi/optimization/COptLog.cpp.new + mv copasi/optimization/COptLog.cpp.new copasi/optimization/COptLog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/COptItem.cpp.new copasi/optimization/COptItem.cpp + touch -r copasi/optimization/COptItem.cpp copasi/optimization/COptItem.cpp.new + mv copasi/optimization/COptItem.cpp.new copasi/optimization/COptItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/optimization/CNL2SOL.cpp.new copasi/optimization/CNL2SOL.cpp + touch -r copasi/optimization/CNL2SOL.cpp copasi/optimization/CNL2SOL.cpp.new + mv copasi/optimization/CNL2SOL.cpp.new copasi/optimization/CNL2SOL.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dstoda.cpp.new copasi/odepack++/dstoda.cpp + touch -r copasi/odepack++/dstoda.cpp copasi/odepack++/dstoda.cpp.new + mv copasi/odepack++/dstoda.cpp.new copasi/odepack++/dstoda.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dsolsy.cpp.new copasi/odepack++/dsolsy.cpp + touch -r copasi/odepack++/dsolsy.cpp copasi/odepack++/dsolsy.cpp.new + mv copasi/odepack++/dsolsy.cpp.new copasi/odepack++/dsolsy.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/drcheck.cpp.new copasi/odepack++/drcheck.cpp + touch -r copasi/odepack++/drcheck.cpp copasi/odepack++/drcheck.cpp.new + mv copasi/odepack++/drcheck.cpp.new copasi/odepack++/drcheck.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dprja.cpp.new copasi/odepack++/dprja.cpp + touch -r copasi/odepack++/dprja.cpp copasi/odepack++/dprja.cpp.new + mv copasi/odepack++/dprja.cpp.new copasi/odepack++/dprja.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dmnorm.cpp.new copasi/odepack++/dmnorm.cpp + touch -r copasi/odepack++/dmnorm.cpp copasi/odepack++/dmnorm.cpp.new + mv copasi/odepack++/dmnorm.cpp.new copasi/odepack++/dmnorm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dintdy.cpp.new copasi/odepack++/dintdy.cpp + touch -r copasi/odepack++/dintdy.cpp copasi/odepack++/dintdy.cpp.new + mv copasi/odepack++/dintdy.cpp.new copasi/odepack++/dintdy.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dfnorm.cpp.new copasi/odepack++/dfnorm.cpp + touch -r copasi/odepack++/dfnorm.cpp copasi/odepack++/dfnorm.cpp.new + mv copasi/odepack++/dfnorm.cpp.new copasi/odepack++/dfnorm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dewset.cpp.new copasi/odepack++/dewset.cpp + touch -r copasi/odepack++/dewset.cpp copasi/odepack++/dewset.cpp.new + mv copasi/odepack++/dewset.cpp.new copasi/odepack++/dewset.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/decsol.cpp.new copasi/odepack++/decsol.cpp + touch -r copasi/odepack++/decsol.cpp copasi/odepack++/decsol.cpp.new + mv copasi/odepack++/decsol.cpp.new copasi/odepack++/decsol.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dcfode.cpp.new copasi/odepack++/dcfode.cpp + touch -r copasi/odepack++/dcfode.cpp copasi/odepack++/dcfode.cpp.new + mv copasi/odepack++/dcfode.cpp.new copasi/odepack++/dcfode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dc_decsol.cpp.new copasi/odepack++/dc_decsol.cpp + touch -r copasi/odepack++/dc_decsol.cpp copasi/odepack++/dc_decsol.cpp.new + mv copasi/odepack++/dc_decsol.cpp.new copasi/odepack++/dc_decsol.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/dbnorm.cpp.new copasi/odepack++/dbnorm.cpp + touch -r copasi/odepack++/dbnorm.cpp copasi/odepack++/dbnorm.cpp.new + mv copasi/odepack++/dbnorm.cpp.new copasi/odepack++/dbnorm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/common.cpp.new copasi/odepack++/common.cpp + touch -r copasi/odepack++/common.cpp copasi/odepack++/common.cpp.new + mv copasi/odepack++/common.cpp.new copasi/odepack++/common.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/Cxerrwd.cpp.new copasi/odepack++/Cxerrwd.cpp + touch -r copasi/odepack++/Cxerrwd.cpp copasi/odepack++/Cxerrwd.cpp.new + mv copasi/odepack++/Cxerrwd.cpp.new copasi/odepack++/Cxerrwd.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CRadau5.cpp.new copasi/odepack++/CRadau5.cpp + touch -r copasi/odepack++/CRadau5.cpp copasi/odepack++/CRadau5.cpp.new + mv copasi/odepack++/CRadau5.cpp.new copasi/odepack++/CRadau5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CLSODAR.cpp.new copasi/odepack++/CLSODAR.cpp + touch -r copasi/odepack++/CLSODAR.cpp copasi/odepack++/CLSODAR.cpp.new + mv copasi/odepack++/CLSODAR.cpp.new copasi/odepack++/CLSODAR.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CLSODA.cpp.new copasi/odepack++/CLSODA.cpp + touch -r copasi/odepack++/CLSODA.cpp copasi/odepack++/CLSODA.cpp.new + mv copasi/odepack++/CLSODA.cpp.new copasi/odepack++/CLSODA.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/odepack++/CInternalSolver.cpp.new copasi/odepack++/CInternalSolver.cpp + touch -r copasi/odepack++/CInternalSolver.cpp copasi/odepack++/CInternalSolver.cpp.new + mv copasi/odepack++/CInternalSolver.cpp.new copasi/odepack++/CInternalSolver.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/moieties/CMoietiesTask.cpp.new copasi/moieties/CMoietiesTask.cpp + touch -r copasi/moieties/CMoietiesTask.cpp copasi/moieties/CMoietiesTask.cpp.new + mv copasi/moieties/CMoietiesTask.cpp.new copasi/moieties/CMoietiesTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/moieties/CMoietiesProblem.cpp.new copasi/moieties/CMoietiesProblem.cpp + touch -r copasi/moieties/CMoietiesProblem.cpp copasi/moieties/CMoietiesProblem.cpp.new + mv copasi/moieties/CMoietiesProblem.cpp.new copasi/moieties/CMoietiesProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/moieties/CMoietiesMethod.cpp.new copasi/moieties/CMoietiesMethod.cpp + touch -r copasi/moieties/CMoietiesMethod.cpp copasi/moieties/CMoietiesMethod.cpp.new + mv copasi/moieties/CMoietiesMethod.cpp.new copasi/moieties/CMoietiesMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CState.cpp.new copasi/model/CState.cpp + touch -r copasi/model/CState.cpp copasi/model/CState.cpp.new + mv copasi/model/CState.cpp.new copasi/model/CState.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CReactionInterface.cpp.new copasi/model/CReactionInterface.cpp + touch -r copasi/model/CReactionInterface.cpp copasi/model/CReactionInterface.cpp.new + mv copasi/model/CReactionInterface.cpp.new copasi/model/CReactionInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CReaction.cpp.new copasi/model/CReaction.cpp + touch -r copasi/model/CReaction.cpp copasi/model/CReaction.cpp.new + mv copasi/model/CReaction.cpp.new copasi/model/CReaction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CObjectLists.cpp.new copasi/model/CObjectLists.cpp + touch -r copasi/model/CObjectLists.cpp copasi/model/CObjectLists.cpp.new + mv copasi/model/CObjectLists.cpp.new copasi/model/CObjectLists.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMoiety.cpp.new copasi/model/CMoiety.cpp + touch -r copasi/model/CMoiety.cpp copasi/model/CMoiety.cpp.new + mv copasi/model/CMoiety.cpp.new copasi/model/CMoiety.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelValue.cpp.new copasi/model/CModelValue.cpp + touch -r copasi/model/CModelValue.cpp copasi/model/CModelValue.cpp.new + mv copasi/model/CModelValue.cpp.new copasi/model/CModelValue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelParameterSet.cpp.new copasi/model/CModelParameterSet.cpp + touch -r copasi/model/CModelParameterSet.cpp copasi/model/CModelParameterSet.cpp.new + mv copasi/model/CModelParameterSet.cpp.new copasi/model/CModelParameterSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelParameterGroup.cpp.new copasi/model/CModelParameterGroup.cpp + touch -r copasi/model/CModelParameterGroup.cpp copasi/model/CModelParameterGroup.cpp.new + mv copasi/model/CModelParameterGroup.cpp.new copasi/model/CModelParameterGroup.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelParameter.cpp.new copasi/model/CModelParameter.cpp + touch -r copasi/model/CModelParameter.cpp copasi/model/CModelParameter.cpp.new + mv copasi/model/CModelParameter.cpp.new copasi/model/CModelParameter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelMerging.cpp.new copasi/model/CModelMerging.cpp + touch -r copasi/model/CModelMerging.cpp copasi/model/CModelMerging.cpp.new + mv copasi/model/CModelMerging.cpp.new copasi/model/CModelMerging.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelExpansion.cpp.new copasi/model/CModelExpansion.cpp + touch -r copasi/model/CModelExpansion.cpp copasi/model/CModelExpansion.cpp.new + mv copasi/model/CModelExpansion.cpp.new copasi/model/CModelExpansion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModelAnalyzer.cpp.new copasi/model/CModelAnalyzer.cpp + touch -r copasi/model/CModelAnalyzer.cpp copasi/model/CModelAnalyzer.cpp.new + mv copasi/model/CModelAnalyzer.cpp.new copasi/model/CModelAnalyzer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CModel.cpp.new copasi/model/CModel.cpp + touch -r copasi/model/CModel.cpp copasi/model/CModel.cpp.new + mv copasi/model/CModel.cpp.new copasi/model/CModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMetabNameInterface.cpp.new copasi/model/CMetabNameInterface.cpp + touch -r copasi/model/CMetabNameInterface.cpp copasi/model/CMetabNameInterface.cpp.new + mv copasi/model/CMetabNameInterface.cpp.new copasi/model/CMetabNameInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMetab.cpp.new copasi/model/CMetab.cpp + touch -r copasi/model/CMetab.cpp copasi/model/CMetab.cpp.new + mv copasi/model/CMetab.cpp.new copasi/model/CMetab.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CMMLOutput.cpp.new copasi/model/CMMLOutput.cpp + touch -r copasi/model/CMMLOutput.cpp copasi/model/CMMLOutput.cpp.new + mv copasi/model/CMMLOutput.cpp.new copasi/model/CMMLOutput.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CEvent.cpp.new copasi/model/CEvent.cpp + touch -r copasi/model/CEvent.cpp copasi/model/CEvent.cpp.new + mv copasi/model/CEvent.cpp.new copasi/model/CEvent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CCompartment.cpp.new copasi/model/CCompartment.cpp + touch -r copasi/model/CCompartment.cpp copasi/model/CCompartment.cpp.new + mv copasi/model/CCompartment.cpp.new copasi/model/CCompartment.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqParser_yacc.cpp.new copasi/model/CChemEqParser_yacc.cpp + touch -r copasi/model/CChemEqParser_yacc.cpp copasi/model/CChemEqParser_yacc.cpp.new + mv copasi/model/CChemEqParser_yacc.cpp.new copasi/model/CChemEqParser_yacc.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqParser_lex.cpp.new copasi/model/CChemEqParser_lex.cpp + touch -r copasi/model/CChemEqParser_lex.cpp copasi/model/CChemEqParser_lex.cpp.new + mv copasi/model/CChemEqParser_lex.cpp.new copasi/model/CChemEqParser_lex.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqParser.cpp.new copasi/model/CChemEqParser.cpp + touch -r copasi/model/CChemEqParser.cpp copasi/model/CChemEqParser.cpp.new + mv copasi/model/CChemEqParser.cpp.new copasi/model/CChemEqParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqInterface.cpp.new copasi/model/CChemEqInterface.cpp + touch -r copasi/model/CChemEqInterface.cpp copasi/model/CChemEqInterface.cpp.new + mv copasi/model/CChemEqInterface.cpp.new copasi/model/CChemEqInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEqElement.cpp.new copasi/model/CChemEqElement.cpp + touch -r copasi/model/CChemEqElement.cpp copasi/model/CChemEqElement.cpp.new + mv copasi/model/CChemEqElement.cpp.new copasi/model/CChemEqElement.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CChemEq.cpp.new copasi/model/CChemEq.cpp + touch -r copasi/model/CChemEq.cpp copasi/model/CChemEq.cpp.new + mv copasi/model/CChemEq.cpp.new copasi/model/CChemEq.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/model/CAnnotation.cpp.new copasi/model/CAnnotation.cpp + touch -r copasi/model/CAnnotation.cpp copasi/model/CAnnotation.cpp.new + mv copasi/model/CAnnotation.cpp.new copasi/model/CAnnotation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseTask.cpp.new copasi/miase/CMiaseTask.cpp + touch -r copasi/miase/CMiaseTask.cpp copasi/miase/CMiaseTask.cpp.new + mv copasi/miase/CMiaseTask.cpp.new copasi/miase/CMiaseTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseSimulation.cpp.new copasi/miase/CMiaseSimulation.cpp + touch -r copasi/miase/CMiaseSimulation.cpp copasi/miase/CMiaseSimulation.cpp.new + mv copasi/miase/CMiaseSimulation.cpp.new copasi/miase/CMiaseSimulation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseParser.cpp.new copasi/miase/CMiaseParser.cpp + touch -r copasi/miase/CMiaseParser.cpp copasi/miase/CMiaseParser.cpp.new + mv copasi/miase/CMiaseParser.cpp.new copasi/miase/CMiaseParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseOutput.cpp.new copasi/miase/CMiaseOutput.cpp + touch -r copasi/miase/CMiaseOutput.cpp copasi/miase/CMiaseOutput.cpp.new + mv copasi/miase/CMiaseOutput.cpp.new copasi/miase/CMiaseOutput.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseModel.cpp.new copasi/miase/CMiaseModel.cpp + touch -r copasi/miase/CMiaseModel.cpp copasi/miase/CMiaseModel.cpp.new + mv copasi/miase/CMiaseModel.cpp.new copasi/miase/CMiaseModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseML.cpp.new copasi/miase/CMiaseML.cpp + touch -r copasi/miase/CMiaseML.cpp copasi/miase/CMiaseML.cpp.new + mv copasi/miase/CMiaseML.cpp.new copasi/miase/CMiaseML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/miase/CMiaseBase.cpp.new copasi/miase/CMiaseBase.cpp + touch -r copasi/miase/CMiaseBase.cpp copasi/miase/CMiaseBase.cpp.new + mv copasi/miase/CMiaseBase.cpp.new copasi/miase/CMiaseBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathUpdateSequence.cpp.new copasi/math/CMathUpdateSequence.cpp + touch -r copasi/math/CMathUpdateSequence.cpp copasi/math/CMathUpdateSequence.cpp.new + mv copasi/math/CMathUpdateSequence.cpp.new copasi/math/CMathUpdateSequence.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathReaction.cpp.new copasi/math/CMathReaction.cpp + touch -r copasi/math/CMathReaction.cpp copasi/math/CMathReaction.cpp.new + mv copasi/math/CMathReaction.cpp.new copasi/math/CMathReaction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathObject.cpp.new copasi/math/CMathObject.cpp + touch -r copasi/math/CMathObject.cpp copasi/math/CMathObject.cpp.new + mv copasi/math/CMathObject.cpp.new copasi/math/CMathObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathHistory.cpp.new copasi/math/CMathHistory.cpp + touch -r copasi/math/CMathHistory.cpp copasi/math/CMathHistory.cpp.new + mv copasi/math/CMathHistory.cpp.new copasi/math/CMathHistory.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathExpression.cpp.new copasi/math/CMathExpression.cpp + touch -r copasi/math/CMathExpression.cpp copasi/math/CMathExpression.cpp.new + mv copasi/math/CMathExpression.cpp.new copasi/math/CMathExpression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathEventQueue.cpp.new copasi/math/CMathEventQueue.cpp + touch -r copasi/math/CMathEventQueue.cpp copasi/math/CMathEventQueue.cpp.new + mv copasi/math/CMathEventQueue.cpp.new copasi/math/CMathEventQueue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathEvent.cpp.new copasi/math/CMathEvent.cpp + touch -r copasi/math/CMathEvent.cpp copasi/math/CMathEvent.cpp.new + mv copasi/math/CMathEvent.cpp.new copasi/math/CMathEvent.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathEnum.cpp.new copasi/math/CMathEnum.cpp + touch -r copasi/math/CMathEnum.cpp copasi/math/CMathEnum.cpp.new + mv copasi/math/CMathEnum.cpp.new copasi/math/CMathEnum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDerive.cpp.new copasi/math/CMathDerive.cpp + touch -r copasi/math/CMathDerive.cpp copasi/math/CMathDerive.cpp.new + mv copasi/math/CMathDerive.cpp.new copasi/math/CMathDerive.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDependencyNodeIterator.cpp.new copasi/math/CMathDependencyNodeIterator.cpp + touch -r copasi/math/CMathDependencyNodeIterator.cpp copasi/math/CMathDependencyNodeIterator.cpp.new + mv copasi/math/CMathDependencyNodeIterator.cpp.new copasi/math/CMathDependencyNodeIterator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDependencyNode.cpp.new copasi/math/CMathDependencyNode.cpp + touch -r copasi/math/CMathDependencyNode.cpp copasi/math/CMathDependencyNode.cpp.new + mv copasi/math/CMathDependencyNode.cpp.new copasi/math/CMathDependencyNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDependencyGraph.cpp.new copasi/math/CMathDependencyGraph.cpp + touch -r copasi/math/CMathDependencyGraph.cpp copasi/math/CMathDependencyGraph.cpp.new + mv copasi/math/CMathDependencyGraph.cpp.new copasi/math/CMathDependencyGraph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathDelay.cpp.new copasi/math/CMathDelay.cpp + touch -r copasi/math/CMathDelay.cpp copasi/math/CMathDelay.cpp.new + mv copasi/math/CMathDelay.cpp.new copasi/math/CMathDelay.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CMathContainer.cpp.new copasi/math/CMathContainer.cpp + touch -r copasi/math/CMathContainer.cpp copasi/math/CMathContainer.cpp.new + mv copasi/math/CMathContainer.cpp.new copasi/math/CMathContainer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CJitExpression.cpp.new copasi/math/CJitExpression.cpp + touch -r copasi/math/CJitExpression.cpp copasi/math/CJitExpression.cpp.new + mv copasi/math/CJitExpression.cpp.new copasi/math/CJitExpression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CJitCompilerImplementation.cpp.new copasi/math/CJitCompilerImplementation.cpp + touch -r copasi/math/CJitCompilerImplementation.cpp copasi/math/CJitCompilerImplementation.cpp.new + mv copasi/math/CJitCompilerImplementation.cpp.new copasi/math/CJitCompilerImplementation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/math/CJitCompiler.cpp.new copasi/math/CJitCompiler.cpp + touch -r copasi/math/CJitCompiler.cpp copasi/math/CJitCompiler.cpp.new + mv copasi/math/CJitCompiler.cpp.new copasi/math/CJitCompiler.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapWolfMethod.cpp.new copasi/lyap/CLyapWolfMethod.cpp + touch -r copasi/lyap/CLyapWolfMethod.cpp copasi/lyap/CLyapWolfMethod.cpp.new + mv copasi/lyap/CLyapWolfMethod.cpp.new copasi/lyap/CLyapWolfMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapTask.cpp.new copasi/lyap/CLyapTask.cpp + touch -r copasi/lyap/CLyapTask.cpp copasi/lyap/CLyapTask.cpp.new + mv copasi/lyap/CLyapTask.cpp.new copasi/lyap/CLyapTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapProblem.cpp.new copasi/lyap/CLyapProblem.cpp + touch -r copasi/lyap/CLyapProblem.cpp copasi/lyap/CLyapProblem.cpp.new + mv copasi/lyap/CLyapProblem.cpp.new copasi/lyap/CLyapProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lyap/CLyapMethod.cpp.new copasi/lyap/CLyapMethod.cpp + touch -r copasi/lyap/CLyapMethod.cpp copasi/lyap/CLyapMethod.cpp.new + mv copasi/lyap/CLyapMethod.cpp.new copasi/lyap/CLyapMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lna/CLNATask.cpp.new copasi/lna/CLNATask.cpp + touch -r copasi/lna/CLNATask.cpp copasi/lna/CLNATask.cpp.new + mv copasi/lna/CLNATask.cpp.new copasi/lna/CLNATask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lna/CLNAProblem.cpp.new copasi/lna/CLNAProblem.cpp + touch -r copasi/lna/CLNAProblem.cpp copasi/lna/CLNAProblem.cpp.new + mv copasi/lna/CLNAProblem.cpp.new copasi/lna/CLNAProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/lna/CLNAMethod.cpp.new copasi/lna/CLNAMethod.cpp + touch -r copasi/lna/CLNAMethod.cpp copasi/lna/CLNAMethod.cpp.new + mv copasi/lna/CLNAMethod.cpp.new copasi/lna/CLNAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/RGTextureSpec.cpp.new copasi/layoutUI/RGTextureSpec.cpp + touch -r copasi/layoutUI/RGTextureSpec.cpp copasi/layoutUI/RGTextureSpec.cpp.new + mv copasi/layoutUI/RGTextureSpec.cpp.new copasi/layoutUI/RGTextureSpec.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/ParaPanel.cpp.new copasi/layoutUI/ParaPanel.cpp + touch -r copasi/layoutUI/ParaPanel.cpp copasi/layoutUI/ParaPanel.cpp.new + mv copasi/layoutUI/ParaPanel.cpp.new copasi/layoutUI/ParaPanel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/NodeSizePanel.cpp.new copasi/layoutUI/NodeSizePanel.cpp + touch -r copasi/layoutUI/NodeSizePanel.cpp copasi/layoutUI/NodeSizePanel.cpp.new + mv copasi/layoutUI/NodeSizePanel.cpp.new copasi/layoutUI/NodeSizePanel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/FontChooser.cpp.new copasi/layoutUI/FontChooser.cpp + touch -r copasi/layoutUI/FontChooser.cpp copasi/layoutUI/FontChooser.cpp.new + mv copasi/layoutUI/FontChooser.cpp.new copasi/layoutUI/FontChooser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CVisParameters.cpp.new copasi/layoutUI/CVisParameters.cpp + touch -r copasi/layoutUI/CVisParameters.cpp copasi/layoutUI/CVisParameters.cpp.new + mv copasi/layoutUI/CVisParameters.cpp.new copasi/layoutUI/CVisParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CSimSummaryInfo.cpp.new copasi/layoutUI/CSimSummaryInfo.cpp + touch -r copasi/layoutUI/CSimSummaryInfo.cpp copasi/layoutUI/CSimSummaryInfo.cpp.new + mv copasi/layoutUI/CSimSummaryInfo.cpp.new copasi/layoutUI/CSimSummaryInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQSpringLayoutParameterWindow.cpp.new copasi/layoutUI/CQSpringLayoutParameterWindow.cpp + touch -r copasi/layoutUI/CQSpringLayoutParameterWindow.cpp copasi/layoutUI/CQSpringLayoutParameterWindow.cpp.new + mv copasi/layoutUI/CQSpringLayoutParameterWindow.cpp.new copasi/layoutUI/CQSpringLayoutParameterWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQScreenshotOptionsDialog.cpp.new copasi/layoutUI/CQScreenshotOptionsDialog.cpp + touch -r copasi/layoutUI/CQScreenshotOptionsDialog.cpp copasi/layoutUI/CQScreenshotOptionsDialog.cpp.new + mv copasi/layoutUI/CQScreenshotOptionsDialog.cpp.new copasi/layoutUI/CQScreenshotOptionsDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQQtImageTexturizer.cpp.new copasi/layoutUI/CQQtImageTexturizer.cpp + touch -r copasi/layoutUI/CQQtImageTexturizer.cpp copasi/layoutUI/CQQtImageTexturizer.cpp.new + mv copasi/layoutUI/CQQtImageTexturizer.cpp.new copasi/layoutUI/CQQtImageTexturizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQPlayerControlWidget.cpp.new copasi/layoutUI/CQPlayerControlWidget.cpp + touch -r copasi/layoutUI/CQPlayerControlWidget.cpp copasi/layoutUI/CQPlayerControlWidget.cpp.new + mv copasi/layoutUI/CQPlayerControlWidget.cpp.new copasi/layoutUI/CQPlayerControlWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQNewMainWindow.cpp.new copasi/layoutUI/CQNewMainWindow.cpp + touch -r copasi/layoutUI/CQNewMainWindow.cpp copasi/layoutUI/CQNewMainWindow.cpp.new + mv copasi/layoutUI/CQNewMainWindow.cpp.new copasi/layoutUI/CQNewMainWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQLayoutThread.cpp.new copasi/layoutUI/CQLayoutThread.cpp + touch -r copasi/layoutUI/CQLayoutThread.cpp copasi/layoutUI/CQLayoutThread.cpp.new + mv copasi/layoutUI/CQLayoutThread.cpp.new copasi/layoutUI/CQLayoutThread.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQLayoutMainWindow.cpp.new copasi/layoutUI/CQLayoutMainWindow.cpp + touch -r copasi/layoutUI/CQLayoutMainWindow.cpp copasi/layoutUI/CQLayoutMainWindow.cpp.new + mv copasi/layoutUI/CQLayoutMainWindow.cpp.new copasi/layoutUI/CQLayoutMainWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLViewport.cpp.new copasi/layoutUI/CQGLViewport.cpp + touch -r copasi/layoutUI/CQGLViewport.cpp copasi/layoutUI/CQGLViewport.cpp.new + mv copasi/layoutUI/CQGLViewport.cpp.new copasi/layoutUI/CQGLViewport.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLNetworkPainter.cpp.new copasi/layoutUI/CQGLNetworkPainter.cpp + touch -r copasi/layoutUI/CQGLNetworkPainter.cpp copasi/layoutUI/CQGLNetworkPainter.cpp.new + mv copasi/layoutUI/CQGLNetworkPainter.cpp.new copasi/layoutUI/CQGLNetworkPainter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLLayoutViewer.cpp.new copasi/layoutUI/CQGLLayoutViewer.cpp + touch -r copasi/layoutUI/CQGLLayoutViewer.cpp copasi/layoutUI/CQGLLayoutViewer.cpp.new + mv copasi/layoutUI/CQGLLayoutViewer.cpp.new copasi/layoutUI/CQGLLayoutViewer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQGLLayoutPainter.cpp.new copasi/layoutUI/CQGLLayoutPainter.cpp + touch -r copasi/layoutUI/CQGLLayoutPainter.cpp copasi/layoutUI/CQGLLayoutPainter.cpp.new + mv copasi/layoutUI/CQGLLayoutPainter.cpp.new copasi/layoutUI/CQGLLayoutPainter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQFontRenderer.cpp.new copasi/layoutUI/CQFontRenderer.cpp + touch -r copasi/layoutUI/CQFontRenderer.cpp copasi/layoutUI/CQFontRenderer.cpp.new + mv copasi/layoutUI/CQFontRenderer.cpp.new copasi/layoutUI/CQFontRenderer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQCurrentValueTable.cpp.new copasi/layoutUI/CQCurrentValueTable.cpp + touch -r copasi/layoutUI/CQCurrentValueTable.cpp copasi/layoutUI/CQCurrentValueTable.cpp.new + mv copasi/layoutUI/CQCurrentValueTable.cpp.new copasi/layoutUI/CQCurrentValueTable.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CQAutolayoutWizard.cpp.new copasi/layoutUI/CQAutolayoutWizard.cpp + touch -r copasi/layoutUI/CQAutolayoutWizard.cpp copasi/layoutUI/CQAutolayoutWizard.cpp.new + mv copasi/layoutUI/CQAutolayoutWizard.cpp.new copasi/layoutUI/CQAutolayoutWizard.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CLabel.cpp.new copasi/layoutUI/CLabel.cpp + touch -r copasi/layoutUI/CLabel.cpp copasi/layoutUI/CLabel.cpp.new + mv copasi/layoutUI/CLabel.cpp.new copasi/layoutUI/CLabel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CGraphNode.cpp.new copasi/layoutUI/CGraphNode.cpp + touch -r copasi/layoutUI/CGraphNode.cpp copasi/layoutUI/CGraphNode.cpp.new + mv copasi/layoutUI/CGraphNode.cpp.new copasi/layoutUI/CGraphNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CGraphCurve.cpp.new copasi/layoutUI/CGraphCurve.cpp + touch -r copasi/layoutUI/CGraphCurve.cpp copasi/layoutUI/CGraphCurve.cpp.new + mv copasi/layoutUI/CGraphCurve.cpp.new copasi/layoutUI/CGraphCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CDataEntity.cpp.new copasi/layoutUI/CDataEntity.cpp + touch -r copasi/layoutUI/CDataEntity.cpp copasi/layoutUI/CDataEntity.cpp.new + mv copasi/layoutUI/CDataEntity.cpp.new copasi/layoutUI/CDataEntity.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CCompartmentGraphNode.cpp.new copasi/layoutUI/CCompartmentGraphNode.cpp + touch -r copasi/layoutUI/CCompartmentGraphNode.cpp copasi/layoutUI/CCompartmentGraphNode.cpp.new + mv copasi/layoutUI/CCompartmentGraphNode.cpp.new copasi/layoutUI/CCompartmentGraphNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/CArrow.cpp.new copasi/layoutUI/CArrow.cpp + touch -r copasi/layoutUI/CArrow.cpp copasi/layoutUI/CArrow.cpp.new + mv copasi/layoutUI/CArrow.cpp.new copasi/layoutUI/CArrow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layoutUI/BezierCurve.cpp.new copasi/layoutUI/BezierCurve.cpp + touch -r copasi/layoutUI/BezierCurve.cpp copasi/layoutUI/BezierCurve.cpp.new + mv copasi/layoutUI/BezierCurve.cpp.new copasi/layoutUI/BezierCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/utility_classes.cpp.new copasi/layout/utility_classes.cpp + touch -r copasi/layout/utility_classes.cpp copasi/layout/utility_classes.cpp.new + mv copasi/layout/utility_classes.cpp.new copasi/layout/utility_classes.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/SBMLDocumentLoader.cpp.new copasi/layout/SBMLDocumentLoader.cpp + touch -r copasi/layout/SBMLDocumentLoader.cpp copasi/layout/SBMLDocumentLoader.cpp.new + mv copasi/layout/SBMLDocumentLoader.cpp.new copasi/layout/SBMLDocumentLoader.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CListOfLayouts.cpp.new copasi/layout/CListOfLayouts.cpp + touch -r copasi/layout/CListOfLayouts.cpp copasi/layout/CListOfLayouts.cpp.new + mv copasi/layout/CListOfLayouts.cpp.new copasi/layout/CListOfLayouts.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayoutState.cpp.new copasi/layout/CLayoutState.cpp + touch -r copasi/layout/CLayoutState.cpp copasi/layout/CLayoutState.cpp.new + mv copasi/layout/CLayoutState.cpp.new copasi/layout/CLayoutState.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayoutInitializer.cpp.new copasi/layout/CLayoutInitializer.cpp + touch -r copasi/layout/CLayoutInitializer.cpp copasi/layout/CLayoutInitializer.cpp.new + mv copasi/layout/CLayoutInitializer.cpp.new copasi/layout/CLayoutInitializer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayoutEngine.cpp.new copasi/layout/CLayoutEngine.cpp + touch -r copasi/layout/CLayoutEngine.cpp copasi/layout/CLayoutEngine.cpp.new + mv copasi/layout/CLayoutEngine.cpp.new copasi/layout/CLayoutEngine.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLayout.cpp.new copasi/layout/CLayout.cpp + touch -r copasi/layout/CLayout.cpp copasi/layout/CLayout.cpp.new + mv copasi/layout/CLayout.cpp.new copasi/layout/CLayout.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLUnresolvedReferenceException.cpp.new copasi/layout/CLUnresolvedReferenceException.cpp + touch -r copasi/layout/CLUnresolvedReferenceException.cpp copasi/layout/CLUnresolvedReferenceException.cpp.new + mv copasi/layout/CLUnresolvedReferenceException.cpp.new copasi/layout/CLUnresolvedReferenceException.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLTransformation2D.cpp.new copasi/layout/CLTransformation2D.cpp + touch -r copasi/layout/CLTransformation2D.cpp copasi/layout/CLTransformation2D.cpp.new + mv copasi/layout/CLTransformation2D.cpp.new copasi/layout/CLTransformation2D.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLTransformation.cpp.new copasi/layout/CLTransformation.cpp + touch -r copasi/layout/CLTransformation.cpp copasi/layout/CLTransformation.cpp.new + mv copasi/layout/CLTransformation.cpp.new copasi/layout/CLTransformation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLText.cpp.new copasi/layout/CLText.cpp + touch -r copasi/layout/CLText.cpp copasi/layout/CLText.cpp.new + mv copasi/layout/CLText.cpp.new copasi/layout/CLText.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLStyle.cpp.new copasi/layout/CLStyle.cpp + touch -r copasi/layout/CLStyle.cpp copasi/layout/CLStyle.cpp.new + mv copasi/layout/CLStyle.cpp.new copasi/layout/CLStyle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLSimpleImageTexturizer.cpp.new copasi/layout/CLSimpleImageTexturizer.cpp + touch -r copasi/layout/CLSimpleImageTexturizer.cpp copasi/layout/CLSimpleImageTexturizer.cpp.new + mv copasi/layout/CLSimpleImageTexturizer.cpp.new copasi/layout/CLSimpleImageTexturizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderResolver.cpp.new copasi/layout/CLRenderResolver.cpp + touch -r copasi/layout/CLRenderResolver.cpp copasi/layout/CLRenderResolver.cpp.new + mv copasi/layout/CLRenderResolver.cpp.new copasi/layout/CLRenderResolver.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderPoint.cpp.new copasi/layout/CLRenderPoint.cpp + touch -r copasi/layout/CLRenderPoint.cpp copasi/layout/CLRenderPoint.cpp.new + mv copasi/layout/CLRenderPoint.cpp.new copasi/layout/CLRenderPoint.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderInformationBase.cpp.new copasi/layout/CLRenderInformationBase.cpp + touch -r copasi/layout/CLRenderInformationBase.cpp copasi/layout/CLRenderInformationBase.cpp.new + mv copasi/layout/CLRenderInformationBase.cpp.new copasi/layout/CLRenderInformationBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderFlattener.cpp.new copasi/layout/CLRenderFlattener.cpp + touch -r copasi/layout/CLRenderFlattener.cpp copasi/layout/CLRenderFlattener.cpp.new + mv copasi/layout/CLRenderFlattener.cpp.new copasi/layout/CLRenderFlattener.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderCurve.cpp.new copasi/layout/CLRenderCurve.cpp + touch -r copasi/layout/CLRenderCurve.cpp copasi/layout/CLRenderCurve.cpp.new + mv copasi/layout/CLRenderCurve.cpp.new copasi/layout/CLRenderCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRenderCubicBezier.cpp.new copasi/layout/CLRenderCubicBezier.cpp + touch -r copasi/layout/CLRenderCubicBezier.cpp copasi/layout/CLRenderCubicBezier.cpp.new + mv copasi/layout/CLRenderCubicBezier.cpp.new copasi/layout/CLRenderCubicBezier.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRelAbsVector.cpp.new copasi/layout/CLRelAbsVector.cpp + touch -r copasi/layout/CLRelAbsVector.cpp copasi/layout/CLRelAbsVector.cpp.new + mv copasi/layout/CLRelAbsVector.cpp.new copasi/layout/CLRelAbsVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRectangle.cpp.new copasi/layout/CLRectangle.cpp + touch -r copasi/layout/CLRectangle.cpp copasi/layout/CLRectangle.cpp.new + mv copasi/layout/CLRectangle.cpp.new copasi/layout/CLRectangle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLReactionGlyph.cpp.new copasi/layout/CLReactionGlyph.cpp + touch -r copasi/layout/CLReactionGlyph.cpp copasi/layout/CLReactionGlyph.cpp.new + mv copasi/layout/CLReactionGlyph.cpp.new copasi/layout/CLReactionGlyph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLRadialGradient.cpp.new copasi/layout/CLRadialGradient.cpp + touch -r copasi/layout/CLRadialGradient.cpp copasi/layout/CLRadialGradient.cpp.new + mv copasi/layout/CLRadialGradient.cpp.new copasi/layout/CLRadialGradient.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLPolygon.cpp.new copasi/layout/CLPolygon.cpp + touch -r copasi/layout/CLPolygon.cpp copasi/layout/CLPolygon.cpp.new + mv copasi/layout/CLPolygon.cpp.new copasi/layout/CLPolygon.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLocalStyle.cpp.new copasi/layout/CLLocalStyle.cpp + touch -r copasi/layout/CLLocalStyle.cpp copasi/layout/CLLocalStyle.cpp.new + mv copasi/layout/CLLocalStyle.cpp.new copasi/layout/CLLocalStyle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLocalRenderInformation.cpp.new copasi/layout/CLLocalRenderInformation.cpp + touch -r copasi/layout/CLLocalRenderInformation.cpp copasi/layout/CLLocalRenderInformation.cpp.new + mv copasi/layout/CLLocalRenderInformation.cpp.new copasi/layout/CLLocalRenderInformation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLinearGradient.cpp.new copasi/layout/CLLinearGradient.cpp + touch -r copasi/layout/CLLinearGradient.cpp copasi/layout/CLLinearGradient.cpp.new + mv copasi/layout/CLLinearGradient.cpp.new copasi/layout/CLLinearGradient.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLineEnding.cpp.new copasi/layout/CLLineEnding.cpp + touch -r copasi/layout/CLLineEnding.cpp copasi/layout/CLLineEnding.cpp.new + mv copasi/layout/CLLineEnding.cpp.new copasi/layout/CLLineEnding.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLLayoutRenderer.cpp.new copasi/layout/CLLayoutRenderer.cpp + touch -r copasi/layout/CLLayoutRenderer.cpp copasi/layout/CLLayoutRenderer.cpp.new + mv copasi/layout/CLLayoutRenderer.cpp.new copasi/layout/CLLayoutRenderer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLImageTexturizer.cpp.new copasi/layout/CLImageTexturizer.cpp + touch -r copasi/layout/CLImageTexturizer.cpp copasi/layout/CLImageTexturizer.cpp.new + mv copasi/layout/CLImageTexturizer.cpp.new copasi/layout/CLImageTexturizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLImage.cpp.new copasi/layout/CLImage.cpp + touch -r copasi/layout/CLImage.cpp copasi/layout/CLImage.cpp.new + mv copasi/layout/CLImage.cpp.new copasi/layout/CLImage.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGroup.cpp.new copasi/layout/CLGroup.cpp + touch -r copasi/layout/CLGroup.cpp copasi/layout/CLGroup.cpp.new + mv copasi/layout/CLGroup.cpp.new copasi/layout/CLGroup.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGraphicalPrimitive2D.cpp.new copasi/layout/CLGraphicalPrimitive2D.cpp + touch -r copasi/layout/CLGraphicalPrimitive2D.cpp copasi/layout/CLGraphicalPrimitive2D.cpp.new + mv copasi/layout/CLGraphicalPrimitive2D.cpp.new copasi/layout/CLGraphicalPrimitive2D.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGraphicalPrimitive1D.cpp.new copasi/layout/CLGraphicalPrimitive1D.cpp + touch -r copasi/layout/CLGraphicalPrimitive1D.cpp copasi/layout/CLGraphicalPrimitive1D.cpp.new + mv copasi/layout/CLGraphicalPrimitive1D.cpp.new copasi/layout/CLGraphicalPrimitive1D.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGraphicalObject.cpp.new copasi/layout/CLGraphicalObject.cpp + touch -r copasi/layout/CLGraphicalObject.cpp copasi/layout/CLGraphicalObject.cpp.new + mv copasi/layout/CLGraphicalObject.cpp.new copasi/layout/CLGraphicalObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGradientStops.cpp.new copasi/layout/CLGradientStops.cpp + touch -r copasi/layout/CLGradientStops.cpp copasi/layout/CLGradientStops.cpp.new + mv copasi/layout/CLGradientStops.cpp.new copasi/layout/CLGradientStops.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGradientStop.cpp.new copasi/layout/CLGradientStop.cpp + touch -r copasi/layout/CLGradientStop.cpp copasi/layout/CLGradientStop.cpp.new + mv copasi/layout/CLGradientStop.cpp.new copasi/layout/CLGradientStop.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGradientBase.cpp.new copasi/layout/CLGradientBase.cpp + touch -r copasi/layout/CLGradientBase.cpp copasi/layout/CLGradientBase.cpp.new + mv copasi/layout/CLGradientBase.cpp.new copasi/layout/CLGradientBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGlyphs.cpp.new copasi/layout/CLGlyphs.cpp + touch -r copasi/layout/CLGlyphs.cpp copasi/layout/CLGlyphs.cpp.new + mv copasi/layout/CLGlyphs.cpp.new copasi/layout/CLGlyphs.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGlobalStyle.cpp.new copasi/layout/CLGlobalStyle.cpp + touch -r copasi/layout/CLGlobalStyle.cpp copasi/layout/CLGlobalStyle.cpp.new + mv copasi/layout/CLGlobalStyle.cpp.new copasi/layout/CLGlobalStyle.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLGlobalRenderInformation.cpp.new copasi/layout/CLGlobalRenderInformation.cpp + touch -r copasi/layout/CLGlobalRenderInformation.cpp copasi/layout/CLGlobalRenderInformation.cpp.new + mv copasi/layout/CLGlobalRenderInformation.cpp.new copasi/layout/CLGlobalRenderInformation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLEllipse.cpp.new copasi/layout/CLEllipse.cpp + touch -r copasi/layout/CLEllipse.cpp copasi/layout/CLEllipse.cpp.new + mv copasi/layout/CLEllipse.cpp.new copasi/layout/CLEllipse.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLDefaultStyles.cpp.new copasi/layout/CLDefaultStyles.cpp + touch -r copasi/layout/CLDefaultStyles.cpp copasi/layout/CLDefaultStyles.cpp.new + mv copasi/layout/CLDefaultStyles.cpp.new copasi/layout/CLDefaultStyles.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLCurve.cpp.new copasi/layout/CLCurve.cpp + touch -r copasi/layout/CLCurve.cpp copasi/layout/CLCurve.cpp.new + mv copasi/layout/CLCurve.cpp.new copasi/layout/CLCurve.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLColorDefinition.cpp.new copasi/layout/CLColorDefinition.cpp + touch -r copasi/layout/CLColorDefinition.cpp copasi/layout/CLColorDefinition.cpp.new + mv copasi/layout/CLColorDefinition.cpp.new copasi/layout/CLColorDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CLBase.cpp.new copasi/layout/CLBase.cpp + touch -r copasi/layout/CLBase.cpp copasi/layout/CLBase.cpp.new + mv copasi/layout/CLBase.cpp.new copasi/layout/CLBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CCopasiSpringLayout.cpp.new copasi/layout/CCopasiSpringLayout.cpp + touch -r copasi/layout/CCopasiSpringLayout.cpp copasi/layout/CCopasiSpringLayout.cpp.new + mv copasi/layout/CCopasiSpringLayout.cpp.new copasi/layout/CCopasiSpringLayout.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/layout/CAbstractLayoutInterface.cpp.new copasi/layout/CAbstractLayoutInterface.cpp + touch -r copasi/layout/CAbstractLayoutInterface.cpp copasi/layout/CAbstractLayoutInterface.cpp.new + mv copasi/layout/CAbstractLayoutInterface.cpp.new copasi/layout/CAbstractLayoutInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CNodeK.cpp.new copasi/function/CNodeK.cpp + touch -r copasi/function/CNodeK.cpp copasi/function/CNodeK.cpp.new + mv copasi/function/CNodeK.cpp.new copasi/function/CNodeK.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CMassAction.cpp.new copasi/function/CMassAction.cpp + touch -r copasi/function/CMassAction.cpp copasi/function/CMassAction.cpp.new + mv copasi/function/CMassAction.cpp.new copasi/function/CMassAction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CKinFunction.cpp.new copasi/function/CKinFunction.cpp + touch -r copasi/function/CKinFunction.cpp copasi/function/CKinFunction.cpp.new + mv copasi/function/CKinFunction.cpp.new copasi/function/CKinFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionParameters.cpp.new copasi/function/CFunctionParameters.cpp + touch -r copasi/function/CFunctionParameters.cpp copasi/function/CFunctionParameters.cpp.new + mv copasi/function/CFunctionParameters.cpp.new copasi/function/CFunctionParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionParameter.cpp.new copasi/function/CFunctionParameter.cpp + touch -r copasi/function/CFunctionParameter.cpp copasi/function/CFunctionParameter.cpp.new + mv copasi/function/CFunctionParameter.cpp.new copasi/function/CFunctionParameter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionDB.cpp.new copasi/function/CFunctionDB.cpp + touch -r copasi/function/CFunctionDB.cpp copasi/function/CFunctionDB.cpp.new + mv copasi/function/CFunctionDB.cpp.new copasi/function/CFunctionDB.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunctionAnalyzer.cpp.new copasi/function/CFunctionAnalyzer.cpp + touch -r copasi/function/CFunctionAnalyzer.cpp copasi/function/CFunctionAnalyzer.cpp.new + mv copasi/function/CFunctionAnalyzer.cpp.new copasi/function/CFunctionAnalyzer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CFunction.cpp.new copasi/function/CFunction.cpp + touch -r copasi/function/CFunction.cpp copasi/function/CFunction.cpp.new + mv copasi/function/CFunction.cpp.new copasi/function/CFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CExpression.cpp.new copasi/function/CExpression.cpp + touch -r copasi/function/CExpression.cpp copasi/function/CExpression.cpp.new + mv copasi/function/CExpression.cpp.new copasi/function/CExpression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationTree.cpp.new copasi/function/CEvaluationTree.cpp + touch -r copasi/function/CEvaluationTree.cpp copasi/function/CEvaluationTree.cpp.new + mv copasi/function/CEvaluationTree.cpp.new copasi/function/CEvaluationTree.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationParser_yacc.cpp.new copasi/function/CEvaluationParser_yacc.cpp + touch -r copasi/function/CEvaluationParser_yacc.cpp copasi/function/CEvaluationParser_yacc.cpp.new + mv copasi/function/CEvaluationParser_yacc.cpp.new copasi/function/CEvaluationParser_yacc.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeWhiteSpace.cpp.new copasi/function/CEvaluationNodeWhiteSpace.cpp + touch -r copasi/function/CEvaluationNodeWhiteSpace.cpp copasi/function/CEvaluationNodeWhiteSpace.cpp.new + mv copasi/function/CEvaluationNodeWhiteSpace.cpp.new copasi/function/CEvaluationNodeWhiteSpace.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeVector.cpp.new copasi/function/CEvaluationNodeVector.cpp + touch -r copasi/function/CEvaluationNodeVector.cpp copasi/function/CEvaluationNodeVector.cpp.new + mv copasi/function/CEvaluationNodeVector.cpp.new copasi/function/CEvaluationNodeVector.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeVariable.cpp.new copasi/function/CEvaluationNodeVariable.cpp + touch -r copasi/function/CEvaluationNodeVariable.cpp copasi/function/CEvaluationNodeVariable.cpp.new + mv copasi/function/CEvaluationNodeVariable.cpp.new copasi/function/CEvaluationNodeVariable.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeUnit.cpp.new copasi/function/CEvaluationNodeUnit.cpp + touch -r copasi/function/CEvaluationNodeUnit.cpp copasi/function/CEvaluationNodeUnit.cpp.new + mv copasi/function/CEvaluationNodeUnit.cpp.new copasi/function/CEvaluationNodeUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeStructure.cpp.new copasi/function/CEvaluationNodeStructure.cpp + touch -r copasi/function/CEvaluationNodeStructure.cpp copasi/function/CEvaluationNodeStructure.cpp.new + mv copasi/function/CEvaluationNodeStructure.cpp.new copasi/function/CEvaluationNodeStructure.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeOperator.cpp.new copasi/function/CEvaluationNodeOperator.cpp + touch -r copasi/function/CEvaluationNodeOperator.cpp copasi/function/CEvaluationNodeOperator.cpp.new + mv copasi/function/CEvaluationNodeOperator.cpp.new copasi/function/CEvaluationNodeOperator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeObject.cpp.new copasi/function/CEvaluationNodeObject.cpp + touch -r copasi/function/CEvaluationNodeObject.cpp copasi/function/CEvaluationNodeObject.cpp.new + mv copasi/function/CEvaluationNodeObject.cpp.new copasi/function/CEvaluationNodeObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeNumber.cpp.new copasi/function/CEvaluationNodeNumber.cpp + touch -r copasi/function/CEvaluationNodeNumber.cpp copasi/function/CEvaluationNodeNumber.cpp.new + mv copasi/function/CEvaluationNodeNumber.cpp.new copasi/function/CEvaluationNodeNumber.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeLogical.cpp.new copasi/function/CEvaluationNodeLogical.cpp + touch -r copasi/function/CEvaluationNodeLogical.cpp copasi/function/CEvaluationNodeLogical.cpp.new + mv copasi/function/CEvaluationNodeLogical.cpp.new copasi/function/CEvaluationNodeLogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeFunction.cpp.new copasi/function/CEvaluationNodeFunction.cpp + touch -r copasi/function/CEvaluationNodeFunction.cpp copasi/function/CEvaluationNodeFunction.cpp.new + mv copasi/function/CEvaluationNodeFunction.cpp.new copasi/function/CEvaluationNodeFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeDelay.cpp.new copasi/function/CEvaluationNodeDelay.cpp + touch -r copasi/function/CEvaluationNodeDelay.cpp copasi/function/CEvaluationNodeDelay.cpp.new + mv copasi/function/CEvaluationNodeDelay.cpp.new copasi/function/CEvaluationNodeDelay.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeConstant.cpp.new copasi/function/CEvaluationNodeConstant.cpp + touch -r copasi/function/CEvaluationNodeConstant.cpp copasi/function/CEvaluationNodeConstant.cpp.new + mv copasi/function/CEvaluationNodeConstant.cpp.new copasi/function/CEvaluationNodeConstant.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeChoice.cpp.new copasi/function/CEvaluationNodeChoice.cpp + touch -r copasi/function/CEvaluationNodeChoice.cpp copasi/function/CEvaluationNodeChoice.cpp.new + mv copasi/function/CEvaluationNodeChoice.cpp.new copasi/function/CEvaluationNodeChoice.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNodeCall.cpp.new copasi/function/CEvaluationNodeCall.cpp + touch -r copasi/function/CEvaluationNodeCall.cpp copasi/function/CEvaluationNodeCall.cpp.new + mv copasi/function/CEvaluationNodeCall.cpp.new copasi/function/CEvaluationNodeCall.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationNode.cpp.new copasi/function/CEvaluationNode.cpp + touch -r copasi/function/CEvaluationNode.cpp copasi/function/CEvaluationNode.cpp.new + mv copasi/function/CEvaluationNode.cpp.new copasi/function/CEvaluationNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CEvaluationLexer_lex.cpp.new copasi/function/CEvaluationLexer_lex.cpp + touch -r copasi/function/CEvaluationLexer_lex.cpp copasi/function/CEvaluationLexer_lex.cpp.new + mv copasi/function/CEvaluationLexer_lex.cpp.new copasi/function/CEvaluationLexer_lex.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CDerive.cpp.new copasi/function/CDerive.cpp + touch -r copasi/function/CDerive.cpp copasi/function/CDerive.cpp.new + mv copasi/function/CDerive.cpp.new copasi/function/CDerive.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/function/CCallParameters.cpp.new copasi/function/CCallParameters.cpp + touch -r copasi/function/CCallParameters.cpp copasi/function/CCallParameters.cpp.new + mv copasi/function/CCallParameters.cpp.new copasi/function/CCallParameters.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CZeroSet.cpp.new copasi/elementaryFluxModes/CZeroSet.cpp + touch -r copasi/elementaryFluxModes/CZeroSet.cpp copasi/elementaryFluxModes/CZeroSet.cpp.new + mv copasi/elementaryFluxModes/CZeroSet.cpp.new copasi/elementaryFluxModes/CZeroSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CTableauMatrix.cpp.new copasi/elementaryFluxModes/CTableauMatrix.cpp + touch -r copasi/elementaryFluxModes/CTableauMatrix.cpp copasi/elementaryFluxModes/CTableauMatrix.cpp.new + mv copasi/elementaryFluxModes/CTableauMatrix.cpp.new copasi/elementaryFluxModes/CTableauMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CTableauLine.cpp.new copasi/elementaryFluxModes/CTableauLine.cpp + touch -r copasi/elementaryFluxModes/CTableauLine.cpp copasi/elementaryFluxModes/CTableauLine.cpp.new + mv copasi/elementaryFluxModes/CTableauLine.cpp.new copasi/elementaryFluxModes/CTableauLine.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CStepMatrixColumn.cpp.new copasi/elementaryFluxModes/CStepMatrixColumn.cpp + touch -r copasi/elementaryFluxModes/CStepMatrixColumn.cpp copasi/elementaryFluxModes/CStepMatrixColumn.cpp.new + mv copasi/elementaryFluxModes/CStepMatrixColumn.cpp.new copasi/elementaryFluxModes/CStepMatrixColumn.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CStepMatrix.cpp.new copasi/elementaryFluxModes/CStepMatrix.cpp + touch -r copasi/elementaryFluxModes/CStepMatrix.cpp copasi/elementaryFluxModes/CStepMatrix.cpp.new + mv copasi/elementaryFluxModes/CStepMatrix.cpp.new copasi/elementaryFluxModes/CStepMatrix.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CSSAMethod.cpp.new copasi/elementaryFluxModes/CSSAMethod.cpp + touch -r copasi/elementaryFluxModes/CSSAMethod.cpp copasi/elementaryFluxModes/CSSAMethod.cpp.new + mv copasi/elementaryFluxModes/CSSAMethod.cpp.new copasi/elementaryFluxModes/CSSAMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CFluxScore.cpp.new copasi/elementaryFluxModes/CFluxScore.cpp + touch -r copasi/elementaryFluxModes/CFluxScore.cpp copasi/elementaryFluxModes/CFluxScore.cpp.new + mv copasi/elementaryFluxModes/CFluxScore.cpp.new copasi/elementaryFluxModes/CFluxScore.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CFluxMode.cpp.new copasi/elementaryFluxModes/CFluxMode.cpp + touch -r copasi/elementaryFluxModes/CFluxMode.cpp copasi/elementaryFluxModes/CFluxMode.cpp.new + mv copasi/elementaryFluxModes/CFluxMode.cpp.new copasi/elementaryFluxModes/CFluxMode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMTask.cpp.new copasi/elementaryFluxModes/CEFMTask.cpp + touch -r copasi/elementaryFluxModes/CEFMTask.cpp copasi/elementaryFluxModes/CEFMTask.cpp.new + mv copasi/elementaryFluxModes/CEFMTask.cpp.new copasi/elementaryFluxModes/CEFMTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMProblem.cpp.new copasi/elementaryFluxModes/CEFMProblem.cpp + touch -r copasi/elementaryFluxModes/CEFMProblem.cpp copasi/elementaryFluxModes/CEFMProblem.cpp.new + mv copasi/elementaryFluxModes/CEFMProblem.cpp.new copasi/elementaryFluxModes/CEFMProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMMethod.cpp.new copasi/elementaryFluxModes/CEFMMethod.cpp + touch -r copasi/elementaryFluxModes/CEFMMethod.cpp copasi/elementaryFluxModes/CEFMMethod.cpp.new + mv copasi/elementaryFluxModes/CEFMMethod.cpp.new copasi/elementaryFluxModes/CEFMMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CEFMAlgorithm.cpp.new copasi/elementaryFluxModes/CEFMAlgorithm.cpp + touch -r copasi/elementaryFluxModes/CEFMAlgorithm.cpp copasi/elementaryFluxModes/CEFMAlgorithm.cpp.new + mv copasi/elementaryFluxModes/CEFMAlgorithm.cpp.new copasi/elementaryFluxModes/CEFMAlgorithm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternTreeNode.cpp.new copasi/elementaryFluxModes/CBitPatternTreeNode.cpp + touch -r copasi/elementaryFluxModes/CBitPatternTreeNode.cpp copasi/elementaryFluxModes/CBitPatternTreeNode.cpp.new + mv copasi/elementaryFluxModes/CBitPatternTreeNode.cpp.new copasi/elementaryFluxModes/CBitPatternTreeNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp.new copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp + touch -r copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp.new + mv copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp.new copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternTree.cpp.new copasi/elementaryFluxModes/CBitPatternTree.cpp + touch -r copasi/elementaryFluxModes/CBitPatternTree.cpp copasi/elementaryFluxModes/CBitPatternTree.cpp.new + mv copasi/elementaryFluxModes/CBitPatternTree.cpp.new copasi/elementaryFluxModes/CBitPatternTree.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/elementaryFluxModes/CBitPatternMethod.cpp.new copasi/elementaryFluxModes/CBitPatternMethod.cpp + touch -r copasi/elementaryFluxModes/CBitPatternMethod.cpp copasi/elementaryFluxModes/CBitPatternMethod.cpp.new + mv copasi/elementaryFluxModes/CBitPatternMethod.cpp.new copasi/elementaryFluxModes/CBitPatternMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/crosssection/CCrossSectionTask.cpp.new copasi/crosssection/CCrossSectionTask.cpp + touch -r copasi/crosssection/CCrossSectionTask.cpp copasi/crosssection/CCrossSectionTask.cpp.new + mv copasi/crosssection/CCrossSectionTask.cpp.new copasi/crosssection/CCrossSectionTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/crosssection/CCrossSectionProblem.cpp.new copasi/crosssection/CCrossSectionProblem.cpp + touch -r copasi/crosssection/CCrossSectionProblem.cpp copasi/crosssection/CCrossSectionProblem.cpp.new + mv copasi/crosssection/CCrossSectionProblem.cpp.new copasi/crosssection/CCrossSectionProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/crosssection/CCrossSectionMethod.cpp.new copasi/crosssection/CCrossSectionMethod.cpp + touch -r copasi/crosssection/CCrossSectionMethod.cpp copasi/crosssection/CCrossSectionMethod.cpp.new + mv copasi/crosssection/CCrossSectionMethod.cpp.new copasi/crosssection/CCrossSectionMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CRootContainer.cpp.new copasi/core/CRootContainer.cpp + touch -r copasi/core/CRootContainer.cpp copasi/core/CRootContainer.cpp.new + mv copasi/core/CRootContainer.cpp.new copasi/core/CRootContainer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CRegisteredCommonName.cpp.new copasi/core/CRegisteredCommonName.cpp + touch -r copasi/core/CRegisteredCommonName.cpp copasi/core/CRegisteredCommonName.cpp.new + mv copasi/core/CRegisteredCommonName.cpp.new copasi/core/CRegisteredCommonName.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CObjectInterface.cpp.new copasi/core/CObjectInterface.cpp + touch -r copasi/core/CObjectInterface.cpp copasi/core/CObjectInterface.cpp.new + mv copasi/core/CObjectInterface.cpp.new copasi/core/CObjectInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataTimer.cpp.new copasi/core/CDataTimer.cpp + touch -r copasi/core/CDataTimer.cpp copasi/core/CDataTimer.cpp.new + mv copasi/core/CDataTimer.cpp.new copasi/core/CDataTimer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataString.cpp.new copasi/core/CDataString.cpp + touch -r copasi/core/CDataString.cpp copasi/core/CDataString.cpp.new + mv copasi/core/CDataString.cpp.new copasi/core/CDataString.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataObjectMap.cpp.new copasi/core/CDataObjectMap.cpp + touch -r copasi/core/CDataObjectMap.cpp copasi/core/CDataObjectMap.cpp.new + mv copasi/core/CDataObjectMap.cpp.new copasi/core/CDataObjectMap.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataObject.cpp.new copasi/core/CDataObject.cpp + touch -r copasi/core/CDataObject.cpp copasi/core/CDataObject.cpp.new + mv copasi/core/CDataObject.cpp.new copasi/core/CDataObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataContainer.cpp.new copasi/core/CDataContainer.cpp + touch -r copasi/core/CDataContainer.cpp copasi/core/CDataContainer.cpp.new + mv copasi/core/CDataContainer.cpp.new copasi/core/CDataContainer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CDataArray.cpp.new copasi/core/CDataArray.cpp + touch -r copasi/core/CDataArray.cpp copasi/core/CDataArray.cpp.new + mv copasi/core/CDataArray.cpp.new copasi/core/CDataArray.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CCore.cpp.new copasi/core/CCore.cpp + touch -r copasi/core/CCore.cpp copasi/core/CCore.cpp.new + mv copasi/core/CCore.cpp.new copasi/core/CCore.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CCommonName.cpp.new copasi/core/CCommonName.cpp + touch -r copasi/core/CCommonName.cpp copasi/core/CCommonName.cpp.new + mv copasi/core/CCommonName.cpp.new copasi/core/CCommonName.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CArrayElementReference.cpp.new copasi/core/CArrayElementReference.cpp + touch -r copasi/core/CArrayElementReference.cpp copasi/core/CArrayElementReference.cpp.new + mv copasi/core/CArrayElementReference.cpp.new copasi/core/CArrayElementReference.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/core/CArray.cpp.new copasi/core/CArray.cpp + touch -r copasi/core/CArray.cpp copasi/core/CArray.cpp.new + mv copasi/core/CArray.cpp.new copasi/core/CArray.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_simplify.cpp.new copasi/compareExpressions/unittests/test_simplify.cpp + touch -r copasi/compareExpressions/unittests/test_simplify.cpp copasi/compareExpressions/unittests/test_simplify.cpp.new + mv copasi/compareExpressions/unittests/test_simplify.cpp.new copasi/compareExpressions/unittests/test_simplify.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_normalform.cpp.new copasi/compareExpressions/unittests/test_normalform.cpp + touch -r copasi/compareExpressions/unittests/test_normalform.cpp copasi/compareExpressions/unittests/test_normalform.cpp.new + mv copasi/compareExpressions/unittests/test_normalform.cpp.new copasi/compareExpressions/unittests/test_normalform.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_node_conversion.cpp.new copasi/compareExpressions/unittests/test_node_conversion.cpp + touch -r copasi/compareExpressions/unittests/test_node_conversion.cpp copasi/compareExpressions/unittests/test_node_conversion.cpp.new + mv copasi/compareExpressions/unittests/test_node_conversion.cpp.new copasi/compareExpressions/unittests/test_node_conversion.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_expression_comparison.cpp.new copasi/compareExpressions/unittests/test_expression_comparison.cpp + touch -r copasi/compareExpressions/unittests/test_expression_comparison.cpp copasi/compareExpressions/unittests/test_expression_comparison.cpp.new + mv copasi/compareExpressions/unittests/test_expression_comparison.cpp.new copasi/compareExpressions/unittests/test_expression_comparison.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_depth_first_iterator.cpp.new copasi/compareExpressions/unittests/test_depth_first_iterator.cpp + touch -r copasi/compareExpressions/unittests/test_depth_first_iterator.cpp copasi/compareExpressions/unittests/test_depth_first_iterator.cpp.new + mv copasi/compareExpressions/unittests/test_depth_first_iterator.cpp.new copasi/compareExpressions/unittests/test_depth_first_iterator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_compare_utilities.cpp.new copasi/compareExpressions/unittests/test_compare_utilities.cpp + touch -r copasi/compareExpressions/unittests/test_compare_utilities.cpp copasi/compareExpressions/unittests/test_compare_utilities.cpp.new + mv copasi/compareExpressions/unittests/test_compare_utilities.cpp.new copasi/compareExpressions/unittests/test_compare_utilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_cnormallogical.cpp.new copasi/compareExpressions/unittests/test_cnormallogical.cpp + touch -r copasi/compareExpressions/unittests/test_cnormallogical.cpp copasi/compareExpressions/unittests/test_cnormallogical.cpp.new + mv copasi/compareExpressions/unittests/test_cnormallogical.cpp.new copasi/compareExpressions/unittests/test_cnormallogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test_biomodels217_expression.cpp.new copasi/compareExpressions/unittests/test_biomodels217_expression.cpp + touch -r copasi/compareExpressions/unittests/test_biomodels217_expression.cpp copasi/compareExpressions/unittests/test_biomodels217_expression.cpp.new + mv copasi/compareExpressions/unittests/test_biomodels217_expression.cpp.new copasi/compareExpressions/unittests/test_biomodels217_expression.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/unittests/test.cpp.new copasi/compareExpressions/unittests/test.cpp + touch -r copasi/compareExpressions/unittests/test.cpp copasi/compareExpressions/unittests/test.cpp.new + mv copasi/compareExpressions/unittests/test.cpp.new copasi/compareExpressions/unittests/test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/stresstest/stress_test.cpp.new copasi/compareExpressions/stresstest/stress_test.cpp + touch -r copasi/compareExpressions/stresstest/stress_test.cpp copasi/compareExpressions/stresstest/stress_test.cpp.new + mv copasi/compareExpressions/stresstest/stress_test.cpp.new copasi/compareExpressions/stresstest/stress_test.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/compare_utilities.cpp.new copasi/compareExpressions/compare_utilities.cpp + touch -r copasi/compareExpressions/compare_utilities.cpp copasi/compareExpressions/compare_utilities.cpp.new + mv copasi/compareExpressions/compare_utilities.cpp.new copasi/compareExpressions/compare_utilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/ConvertToCEvaluationNode.cpp.new copasi/compareExpressions/ConvertToCEvaluationNode.cpp + touch -r copasi/compareExpressions/ConvertToCEvaluationNode.cpp copasi/compareExpressions/ConvertToCEvaluationNode.cpp.new + mv copasi/compareExpressions/ConvertToCEvaluationNode.cpp.new copasi/compareExpressions/ConvertToCEvaluationNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalTranslation.cpp.new copasi/compareExpressions/CNormalTranslation.cpp + touch -r copasi/compareExpressions/CNormalTranslation.cpp copasi/compareExpressions/CNormalTranslation.cpp.new + mv copasi/compareExpressions/CNormalTranslation.cpp.new copasi/compareExpressions/CNormalTranslation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalSum.cpp.new copasi/compareExpressions/CNormalSum.cpp + touch -r copasi/compareExpressions/CNormalSum.cpp copasi/compareExpressions/CNormalSum.cpp.new + mv copasi/compareExpressions/CNormalSum.cpp.new copasi/compareExpressions/CNormalSum.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalProduct.cpp.new copasi/compareExpressions/CNormalProduct.cpp + touch -r copasi/compareExpressions/CNormalProduct.cpp copasi/compareExpressions/CNormalProduct.cpp.new + mv copasi/compareExpressions/CNormalProduct.cpp.new copasi/compareExpressions/CNormalProduct.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalLogicalItem.cpp.new copasi/compareExpressions/CNormalLogicalItem.cpp + touch -r copasi/compareExpressions/CNormalLogicalItem.cpp copasi/compareExpressions/CNormalLogicalItem.cpp.new + mv copasi/compareExpressions/CNormalLogicalItem.cpp.new copasi/compareExpressions/CNormalLogicalItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalLogical.cpp.new copasi/compareExpressions/CNormalLogical.cpp + touch -r copasi/compareExpressions/CNormalLogical.cpp copasi/compareExpressions/CNormalLogical.cpp.new + mv copasi/compareExpressions/CNormalLogical.cpp.new copasi/compareExpressions/CNormalLogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalLcm.cpp.new copasi/compareExpressions/CNormalLcm.cpp + touch -r copasi/compareExpressions/CNormalLcm.cpp copasi/compareExpressions/CNormalLcm.cpp.new + mv copasi/compareExpressions/CNormalLcm.cpp.new copasi/compareExpressions/CNormalLcm.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalItemPower.cpp.new copasi/compareExpressions/CNormalItemPower.cpp + touch -r copasi/compareExpressions/CNormalItemPower.cpp copasi/compareExpressions/CNormalItemPower.cpp.new + mv copasi/compareExpressions/CNormalItemPower.cpp.new copasi/compareExpressions/CNormalItemPower.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalItem.cpp.new copasi/compareExpressions/CNormalItem.cpp + touch -r copasi/compareExpressions/CNormalItem.cpp copasi/compareExpressions/CNormalItem.cpp.new + mv copasi/compareExpressions/CNormalItem.cpp.new copasi/compareExpressions/CNormalItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalGeneralPower.cpp.new copasi/compareExpressions/CNormalGeneralPower.cpp + touch -r copasi/compareExpressions/CNormalGeneralPower.cpp copasi/compareExpressions/CNormalGeneralPower.cpp.new + mv copasi/compareExpressions/CNormalGeneralPower.cpp.new copasi/compareExpressions/CNormalGeneralPower.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalFunction.cpp.new copasi/compareExpressions/CNormalFunction.cpp + touch -r copasi/compareExpressions/CNormalFunction.cpp copasi/compareExpressions/CNormalFunction.cpp.new + mv copasi/compareExpressions/CNormalFunction.cpp.new copasi/compareExpressions/CNormalFunction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalFraction.cpp.new copasi/compareExpressions/CNormalFraction.cpp + touch -r copasi/compareExpressions/CNormalFraction.cpp copasi/compareExpressions/CNormalFraction.cpp.new + mv copasi/compareExpressions/CNormalFraction.cpp.new copasi/compareExpressions/CNormalFraction.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalChoiceLogical.cpp.new copasi/compareExpressions/CNormalChoiceLogical.cpp + touch -r copasi/compareExpressions/CNormalChoiceLogical.cpp copasi/compareExpressions/CNormalChoiceLogical.cpp.new + mv copasi/compareExpressions/CNormalChoiceLogical.cpp.new copasi/compareExpressions/CNormalChoiceLogical.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalChoice.cpp.new copasi/compareExpressions/CNormalChoice.cpp + touch -r copasi/compareExpressions/CNormalChoice.cpp copasi/compareExpressions/CNormalChoice.cpp.new + mv copasi/compareExpressions/CNormalChoice.cpp.new copasi/compareExpressions/CNormalChoice.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalCall.cpp.new copasi/compareExpressions/CNormalCall.cpp + touch -r copasi/compareExpressions/CNormalCall.cpp copasi/compareExpressions/CNormalCall.cpp.new + mv copasi/compareExpressions/CNormalCall.cpp.new copasi/compareExpressions/CNormalCall.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CNormalBase.cpp.new copasi/compareExpressions/CNormalBase.cpp + touch -r copasi/compareExpressions/CNormalBase.cpp copasi/compareExpressions/CNormalBase.cpp.new + mv copasi/compareExpressions/CNormalBase.cpp.new copasi/compareExpressions/CNormalBase.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/compareExpressions/CEvaluationNodeNormalizer.cpp.new copasi/compareExpressions/CEvaluationNodeNormalizer.cpp + touch -r copasi/compareExpressions/CEvaluationNodeNormalizer.cpp copasi/compareExpressions/CEvaluationNodeNormalizer.cpp.new + mv copasi/compareExpressions/CEvaluationNodeNormalizer.cpp.new copasi/compareExpressions/CEvaluationNodeNormalizer.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/COptions.cpp.new copasi/commandline/COptions.cpp + touch -r copasi/commandline/COptions.cpp copasi/commandline/COptions.cpp.new + mv copasi/commandline/COptions.cpp.new copasi/commandline/COptions.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/COptionParser.cpp.new copasi/commandline/COptionParser.cpp + touch -r copasi/commandline/COptionParser.cpp copasi/commandline/COptionParser.cpp.new + mv copasi/commandline/COptionParser.cpp.new copasi/commandline/COptionParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/CLocaleString.cpp.new copasi/commandline/CLocaleString.cpp + touch -r copasi/commandline/CLocaleString.cpp copasi/commandline/CLocaleString.cpp.new + mv copasi/commandline/CLocaleString.cpp.new copasi/commandline/CLocaleString.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/commandline/CConfigurationFile.cpp.new copasi/commandline/CConfigurationFile.cpp + touch -r copasi/commandline/CConfigurationFile.cpp copasi/commandline/CConfigurationFile.cpp.new + mv copasi/commandline/CConfigurationFile.cpp.new copasi/commandline/CConfigurationFile.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/python/local.cpp.new copasi/bindings/python/local.cpp + touch -r copasi/bindings/python/local.cpp copasi/bindings/python/local.cpp.new + mv copasi/bindings/python/local.cpp.new copasi/bindings/python/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/perl/local.cpp.new copasi/bindings/perl/local.cpp + touch -r copasi/bindings/perl/local.cpp copasi/bindings/perl/local.cpp.new + mv copasi/bindings/perl/local.cpp.new copasi/bindings/perl/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/octave/local.cpp.new copasi/bindings/octave/local.cpp + touch -r copasi/bindings/octave/local.cpp copasi/bindings/octave/local.cpp.new + mv copasi/bindings/octave/local.cpp.new copasi/bindings/octave/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/java/local.cpp.new copasi/bindings/java/local.cpp + touch -r copasi/bindings/java/local.cpp copasi/bindings/java/local.cpp.new + mv copasi/bindings/java/local.cpp.new copasi/bindings/java/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/csharp/local.cpp.new copasi/bindings/csharp/local.cpp + touch -r copasi/bindings/csharp/local.cpp copasi/bindings/csharp/local.cpp.new + mv copasi/bindings/csharp/local.cpp.new copasi/bindings/csharp/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/runSedML/runSedML.cpp.new copasi/bindings/cpp_examples/runSedML/runSedML.cpp + touch -r copasi/bindings/cpp_examples/runSedML/runSedML.cpp copasi/bindings/cpp_examples/runSedML/runSedML.cpp.new + mv copasi/bindings/cpp_examples/runSedML/runSedML.cpp.new copasi/bindings/cpp_examples/runSedML/runSedML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/runScan/runScan.cpp.new copasi/bindings/cpp_examples/runScan/runScan.cpp + touch -r copasi/bindings/cpp_examples/runScan/runScan.cpp copasi/bindings/cpp_examples/runScan/runScan.cpp.new + mv copasi/bindings/cpp_examples/runScan/runScan.cpp.new copasi/bindings/cpp_examples/runScan/runScan.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/renderLayout/main.cpp.new copasi/bindings/cpp_examples/renderLayout/main.cpp + touch -r copasi/bindings/cpp_examples/renderLayout/main.cpp copasi/bindings/cpp_examples/renderLayout/main.cpp.new + mv copasi/bindings/cpp_examples/renderLayout/main.cpp.new copasi/bindings/cpp_examples/renderLayout/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/renameActiveReport/main.cpp.new copasi/bindings/cpp_examples/renameActiveReport/main.cpp + touch -r copasi/bindings/cpp_examples/renameActiveReport/main.cpp copasi/bindings/cpp_examples/renameActiveReport/main.cpp.new + mv copasi/bindings/cpp_examples/renameActiveReport/main.cpp.new copasi/bindings/cpp_examples/renameActiveReport/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp.new copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp + touch -r copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp.new + mv copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp.new copasi/bindings/cpp_examples/printFluxModes/printFluxModes.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp.new copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp + touch -r copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp.new + mv copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp.new copasi/bindings/cpp_examples/printAffectedExperiments/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp.new copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp + touch -r copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp.new + mv copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp.new copasi/bindings/cpp_examples/exportSedML/exportSedML.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example9/example9.cpp.new copasi/bindings/cpp_examples/example9/example9.cpp + touch -r copasi/bindings/cpp_examples/example9/example9.cpp copasi/bindings/cpp_examples/example9/example9.cpp.new + mv copasi/bindings/cpp_examples/example9/example9.cpp.new copasi/bindings/cpp_examples/example9/example9.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example8/example8.cpp.new copasi/bindings/cpp_examples/example8/example8.cpp + touch -r copasi/bindings/cpp_examples/example8/example8.cpp copasi/bindings/cpp_examples/example8/example8.cpp.new + mv copasi/bindings/cpp_examples/example8/example8.cpp.new copasi/bindings/cpp_examples/example8/example8.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example7/example7.cpp.new copasi/bindings/cpp_examples/example7/example7.cpp + touch -r copasi/bindings/cpp_examples/example7/example7.cpp copasi/bindings/cpp_examples/example7/example7.cpp.new + mv copasi/bindings/cpp_examples/example7/example7.cpp.new copasi/bindings/cpp_examples/example7/example7.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example6/example6.cpp.new copasi/bindings/cpp_examples/example6/example6.cpp + touch -r copasi/bindings/cpp_examples/example6/example6.cpp copasi/bindings/cpp_examples/example6/example6.cpp.new + mv copasi/bindings/cpp_examples/example6/example6.cpp.new copasi/bindings/cpp_examples/example6/example6.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example5/example5.cpp.new copasi/bindings/cpp_examples/example5/example5.cpp + touch -r copasi/bindings/cpp_examples/example5/example5.cpp copasi/bindings/cpp_examples/example5/example5.cpp.new + mv copasi/bindings/cpp_examples/example5/example5.cpp.new copasi/bindings/cpp_examples/example5/example5.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example4/example4.cpp.new copasi/bindings/cpp_examples/example4/example4.cpp + touch -r copasi/bindings/cpp_examples/example4/example4.cpp copasi/bindings/cpp_examples/example4/example4.cpp.new + mv copasi/bindings/cpp_examples/example4/example4.cpp.new copasi/bindings/cpp_examples/example4/example4.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example3/example3.cpp.new copasi/bindings/cpp_examples/example3/example3.cpp + touch -r copasi/bindings/cpp_examples/example3/example3.cpp copasi/bindings/cpp_examples/example3/example3.cpp.new + mv copasi/bindings/cpp_examples/example3/example3.cpp.new copasi/bindings/cpp_examples/example3/example3.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example2/example2.cpp.new copasi/bindings/cpp_examples/example2/example2.cpp + touch -r copasi/bindings/cpp_examples/example2/example2.cpp copasi/bindings/cpp_examples/example2/example2.cpp.new + mv copasi/bindings/cpp_examples/example2/example2.cpp.new copasi/bindings/cpp_examples/example2/example2.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example10/example10.cpp.new copasi/bindings/cpp_examples/example10/example10.cpp + touch -r copasi/bindings/cpp_examples/example10/example10.cpp copasi/bindings/cpp_examples/example10/example10.cpp.new + mv copasi/bindings/cpp_examples/example10/example10.cpp.new copasi/bindings/cpp_examples/example10/example10.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/example1/example1.cpp.new copasi/bindings/cpp_examples/example1/example1.cpp + touch -r copasi/bindings/cpp_examples/example1/example1.cpp copasi/bindings/cpp_examples/example1/example1.cpp.new + mv copasi/bindings/cpp_examples/example1/example1.cpp.new copasi/bindings/cpp_examples/example1/example1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/changeValues/changeValues.cpp.new copasi/bindings/cpp_examples/changeValues/changeValues.cpp + touch -r copasi/bindings/cpp_examples/changeValues/changeValues.cpp copasi/bindings/cpp_examples/changeValues/changeValues.cpp.new + mv copasi/bindings/cpp_examples/changeValues/changeValues.cpp.new copasi/bindings/cpp_examples/changeValues/changeValues.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp.new copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp + touch -r copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp.new + mv copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp.new copasi/bindings/cpp_examples/calculateSolutionStatistic/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/cpp_examples/assignParameterSet/main.cpp.new copasi/bindings/cpp_examples/assignParameterSet/main.cpp + touch -r copasi/bindings/cpp_examples/assignParameterSet/main.cpp copasi/bindings/cpp_examples/assignParameterSet/main.cpp.new + mv copasi/bindings/cpp_examples/assignParameterSet/main.cpp.new copasi/bindings/cpp_examples/assignParameterSet/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/common/local_common.cpp.new copasi/bindings/common/local_common.cpp + touch -r copasi/bindings/common/local_common.cpp copasi/bindings/common/local_common.cpp.new + mv copasi/bindings/common/local_common.cpp.new copasi/bindings/common/local_common.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/common/downcast_common.cpp.new copasi/bindings/common/downcast_common.cpp + touch -r copasi/bindings/common/downcast_common.cpp copasi/bindings/common/downcast_common.cpp.new + mv copasi/bindings/common/downcast_common.cpp.new copasi/bindings/common/downcast_common.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/R/local.cpp.new copasi/bindings/R/local.cpp + touch -r copasi/bindings/R/local.cpp copasi/bindings/R/local.cpp.new + mv copasi/bindings/R/local.cpp.new copasi/bindings/R/local.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/bindings/R/RProcessCallback.cpp.new copasi/bindings/R/RProcessCallback.cpp + touch -r copasi/bindings/R/RProcessCallback.cpp copasi/bindings/R/RProcessCallback.cpp.new + mv copasi/bindings/R/RProcessCallback.cpp.new copasi/bindings/R/RProcessCallback.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dScale.cpp.new copasi/barChart/qwt3dScale.cpp + touch -r copasi/barChart/qwt3dScale.cpp copasi/barChart/qwt3dScale.cpp.new + mv copasi/barChart/qwt3dScale.cpp.new copasi/barChart/qwt3dScale.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dPlot.cpp.new copasi/barChart/qwt3dPlot.cpp + touch -r copasi/barChart/qwt3dPlot.cpp copasi/barChart/qwt3dPlot.cpp.new + mv copasi/barChart/qwt3dPlot.cpp.new copasi/barChart/qwt3dPlot.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dColor.cpp.new copasi/barChart/qwt3dColor.cpp + touch -r copasi/barChart/qwt3dColor.cpp copasi/barChart/qwt3dColor.cpp.new + mv copasi/barChart/qwt3dColor.cpp.new copasi/barChart/qwt3dColor.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/qwt3dBars.cpp.new copasi/barChart/qwt3dBars.cpp + touch -r copasi/barChart/qwt3dBars.cpp copasi/barChart/qwt3dBars.cpp.new + mv copasi/barChart/qwt3dBars.cpp.new copasi/barChart/qwt3dBars.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/CQBaseWidget.cpp.new copasi/barChart/CQBaseWidget.cpp + touch -r copasi/barChart/CQBaseWidget.cpp copasi/barChart/CQBaseWidget.cpp.new + mv copasi/barChart/CQBaseWidget.cpp.new copasi/barChart/CQBaseWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/barChart/CQ3DBarsModifier.cpp.new copasi/barChart/CQ3DBarsModifier.cpp + touch -r copasi/barChart/CQ3DBarsModifier.cpp copasi/barChart/CQ3DBarsModifier.cpp.new + mv copasi/barChart/CQ3DBarsModifier.cpp.new copasi/barChart/CQ3DBarsModifier.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CStatistics.cpp.new copasi/analytics/CStatistics.cpp + touch -r copasi/analytics/CStatistics.cpp copasi/analytics/CStatistics.cpp.new + mv copasi/analytics/CStatistics.cpp.new copasi/analytics/CStatistics.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CAnalyticsTask.cpp.new copasi/analytics/CAnalyticsTask.cpp + touch -r copasi/analytics/CAnalyticsTask.cpp copasi/analytics/CAnalyticsTask.cpp.new + mv copasi/analytics/CAnalyticsTask.cpp.new copasi/analytics/CAnalyticsTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CAnalyticsProblem.cpp.new copasi/analytics/CAnalyticsProblem.cpp + touch -r copasi/analytics/CAnalyticsProblem.cpp copasi/analytics/CAnalyticsProblem.cpp.new + mv copasi/analytics/CAnalyticsProblem.cpp.new copasi/analytics/CAnalyticsProblem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/analytics/CAnalyticsMethod.cpp.new copasi/analytics/CAnalyticsMethod.cpp + touch -r copasi/analytics/CAnalyticsMethod.cpp copasi/analytics/CAnalyticsMethod.cpp.new + mv copasi/analytics/CAnalyticsMethod.cpp.new copasi/analytics/CAnalyticsMethod.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ViewCurrentUI/worker.cpp.new copasi/ViewCurrentUI/worker.cpp + touch -r copasi/ViewCurrentUI/worker.cpp copasi/ViewCurrentUI/worker.cpp.new + mv copasi/ViewCurrentUI/worker.cpp.new copasi/ViewCurrentUI/worker.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ViewCurrentUI/main.cpp.new copasi/ViewCurrentUI/main.cpp + touch -r copasi/ViewCurrentUI/main.cpp copasi/ViewCurrentUI/main.cpp.new + mv copasi/ViewCurrentUI/main.cpp.new copasi/ViewCurrentUI/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ViewCurrentUI/arguments.cpp.new copasi/ViewCurrentUI/arguments.cpp + touch -r copasi/ViewCurrentUI/arguments.cpp copasi/ViewCurrentUI/arguments.cpp.new + mv copasi/ViewCurrentUI/arguments.cpp.new copasi/ViewCurrentUI/arguments.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/qtUtilities.cpp.new copasi/UI/qtUtilities.cpp + touch -r copasi/UI/qtUtilities.cpp copasi/UI/qtUtilities.cpp.new + mv copasi/UI/qtUtilities.cpp.new copasi/UI/qtUtilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/parametertable.cpp.new copasi/UI/parametertable.cpp + touch -r copasi/UI/parametertable.cpp copasi/UI/parametertable.cpp.new + mv copasi/UI/parametertable.cpp.new copasi/UI/parametertable.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/objectdebug.cpp.new copasi/UI/objectdebug.cpp + touch -r copasi/UI/objectdebug.cpp copasi/UI/objectdebug.cpp.new + mv copasi/UI/objectdebug.cpp.new copasi/UI/objectdebug.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/listviews.cpp.new copasi/UI/listviews.cpp + touch -r copasi/UI/listviews.cpp copasi/UI/listviews.cpp.new + mv copasi/UI/listviews.cpp.new copasi/UI/listviews.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/copasiui3window.cpp.new copasi/UI/copasiui3window.cpp + touch -r copasi/UI/copasiui3window.cpp copasi/UI/copasiui3window.cpp.new + mv copasi/UI/copasiui3window.cpp.new copasi/UI/copasiui3window.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/copasiWidget.cpp.new copasi/UI/copasiWidget.cpp + touch -r copasi/UI/copasiWidget.cpp copasi/UI/copasiWidget.cpp.new + mv copasi/UI/copasiWidget.cpp.new copasi/UI/copasiWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/TaskWidget.cpp.new copasi/UI/TaskWidget.cpp + touch -r copasi/UI/TaskWidget.cpp copasi/UI/TaskWidget.cpp.new + mv copasi/UI/TaskWidget.cpp.new copasi/UI/TaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SteadyStateWidget.cpp.new copasi/UI/SteadyStateWidget.cpp + touch -r copasi/UI/SteadyStateWidget.cpp copasi/UI/SteadyStateWidget.cpp.new + mv copasi/UI/SteadyStateWidget.cpp.new copasi/UI/SteadyStateWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/StateSubwidget.cpp.new copasi/UI/StateSubwidget.cpp + touch -r copasi/UI/StateSubwidget.cpp copasi/UI/StateSubwidget.cpp.new + mv copasi/UI/StateSubwidget.cpp.new copasi/UI/StateSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SliderSettingsDialog.cpp.new copasi/UI/SliderSettingsDialog.cpp + touch -r copasi/UI/SliderSettingsDialog.cpp copasi/UI/SliderSettingsDialog.cpp.new + mv copasi/UI/SliderSettingsDialog.cpp.new copasi/UI/SliderSettingsDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SliderDialog.cpp.new copasi/UI/SliderDialog.cpp + touch -r copasi/UI/SliderDialog.cpp copasi/UI/SliderDialog.cpp.new + mv copasi/UI/SliderDialog.cpp.new copasi/UI/SliderDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SensitivitiesWidget.cpp.new copasi/UI/SensitivitiesWidget.cpp + touch -r copasi/UI/SensitivitiesWidget.cpp copasi/UI/SensitivitiesWidget.cpp.new + mv copasi/UI/SensitivitiesWidget.cpp.new copasi/UI/SensitivitiesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/SensWidgetComboBox.cpp.new copasi/UI/SensWidgetComboBox.cpp + touch -r copasi/UI/SensWidgetComboBox.cpp copasi/UI/SensWidgetComboBox.cpp.new + mv copasi/UI/SensWidgetComboBox.cpp.new copasi/UI/SensWidgetComboBox.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ScanWidget.cpp.new copasi/UI/ScanWidget.cpp + touch -r copasi/UI/ScanWidget.cpp copasi/UI/ScanWidget.cpp.new + mv copasi/UI/ScanWidget.cpp.new copasi/UI/ScanWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ReactionsWidget1.cpp.new copasi/UI/ReactionsWidget1.cpp + touch -r copasi/UI/ReactionsWidget1.cpp copasi/UI/ReactionsWidget1.cpp.new + mv copasi/UI/ReactionsWidget1.cpp.new copasi/UI/ReactionsWidget1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ObjectBrowserWidget.cpp.new copasi/UI/ObjectBrowserWidget.cpp + touch -r copasi/UI/ObjectBrowserWidget.cpp copasi/UI/ObjectBrowserWidget.cpp.new + mv copasi/UI/ObjectBrowserWidget.cpp.new copasi/UI/ObjectBrowserWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ObjectBrowserItem.cpp.new copasi/UI/ObjectBrowserItem.cpp + touch -r copasi/UI/ObjectBrowserItem.cpp copasi/UI/ObjectBrowserItem.cpp.new + mv copasi/UI/ObjectBrowserItem.cpp.new copasi/UI/ObjectBrowserItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/ObjectBrowserDialog.cpp.new copasi/UI/ObjectBrowserDialog.cpp + touch -r copasi/UI/ObjectBrowserDialog.cpp copasi/UI/ObjectBrowserDialog.cpp.new + mv copasi/UI/ObjectBrowserDialog.cpp.new copasi/UI/ObjectBrowserDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/MyLineEdit.cpp.new copasi/UI/MyLineEdit.cpp + touch -r copasi/UI/MyLineEdit.cpp copasi/UI/MyLineEdit.cpp.new + mv copasi/UI/MyLineEdit.cpp.new copasi/UI/MyLineEdit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/FunctionWidget1.cpp.new copasi/UI/FunctionWidget1.cpp + touch -r copasi/UI/FunctionWidget1.cpp copasi/UI/FunctionWidget1.cpp.new + mv copasi/UI/FunctionWidget1.cpp.new copasi/UI/FunctionWidget1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/DefaultplotDialog.cpp.new copasi/UI/DefaultplotDialog.cpp + touch -r copasi/UI/DefaultplotDialog.cpp copasi/UI/DefaultplotDialog.cpp.new + mv copasi/UI/DefaultplotDialog.cpp.new copasi/UI/DefaultplotDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/DataModelGUI.cpp.new copasi/UI/DataModelGUI.cpp + touch -r copasi/UI/DataModelGUI.cpp copasi/UI/DataModelGUI.cpp.new + mv copasi/UI/DataModelGUI.cpp.new copasi/UI/DataModelGUI.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CopasiSlider.cpp.new copasi/UI/CopasiSlider.cpp + touch -r copasi/UI/CopasiSlider.cpp copasi/UI/CopasiSlider.cpp.new + mv copasi/UI/CopasiSlider.cpp.new copasi/UI/CopasiSlider.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CopasiFileDialog.cpp.new copasi/UI/CopasiFileDialog.cpp + touch -r copasi/UI/CopasiFileDialog.cpp copasi/UI/CopasiFileDialog.cpp.new + mv copasi/UI/CopasiFileDialog.cpp.new copasi/UI/CopasiFileDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CWindowInterface.cpp.new copasi/UI/CWindowInterface.cpp + touch -r copasi/UI/CWindowInterface.cpp copasi/UI/CWindowInterface.cpp.new + mv copasi/UI/CWindowInterface.cpp.new copasi/UI/CWindowInterface.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CUpDownSubwidget.cpp.new copasi/UI/CUpDownSubwidget.cpp + touch -r copasi/UI/CUpDownSubwidget.cpp copasi/UI/CUpDownSubwidget.cpp.new + mv copasi/UI/CUpDownSubwidget.cpp.new copasi/UI/CUpDownSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetTask.cpp.new copasi/UI/CScanWidgetTask.cpp + touch -r copasi/UI/CScanWidgetTask.cpp copasi/UI/CScanWidgetTask.cpp.new + mv copasi/UI/CScanWidgetTask.cpp.new copasi/UI/CScanWidgetTask.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetScan.cpp.new copasi/UI/CScanWidgetScan.cpp + touch -r copasi/UI/CScanWidgetScan.cpp copasi/UI/CScanWidgetScan.cpp.new + mv copasi/UI/CScanWidgetScan.cpp.new copasi/UI/CScanWidgetScan.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetRepeat.cpp.new copasi/UI/CScanWidgetRepeat.cpp + touch -r copasi/UI/CScanWidgetRepeat.cpp copasi/UI/CScanWidgetRepeat.cpp.new + mv copasi/UI/CScanWidgetRepeat.cpp.new copasi/UI/CScanWidgetRepeat.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanWidgetRandom.cpp.new copasi/UI/CScanWidgetRandom.cpp + touch -r copasi/UI/CScanWidgetRandom.cpp copasi/UI/CScanWidgetRandom.cpp.new + mv copasi/UI/CScanWidgetRandom.cpp.new copasi/UI/CScanWidgetRandom.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanItemData.cpp.new copasi/UI/CScanItemData.cpp + touch -r copasi/UI/CScanItemData.cpp copasi/UI/CScanItemData.cpp.new + mv copasi/UI/CScanItemData.cpp.new copasi/UI/CScanItemData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CScanContainerWidget.cpp.new copasi/UI/CScanContainerWidget.cpp + touch -r copasi/UI/CScanContainerWidget.cpp copasi/UI/CScanContainerWidget.cpp.new + mv copasi/UI/CScanContainerWidget.cpp.new copasi/UI/CScanContainerWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQValidatorUnit.cpp.new copasi/UI/CQValidatorUnit.cpp + touch -r copasi/UI/CQValidatorUnit.cpp copasi/UI/CQValidatorUnit.cpp.new + mv copasi/UI/CQValidatorUnit.cpp.new copasi/UI/CQValidatorUnit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQValidator.cpp.new copasi/UI/CQValidator.cpp + touch -r copasi/UI/CQValidator.cpp copasi/UI/CQValidator.cpp.new + mv copasi/UI/CQValidator.cpp.new copasi/UI/CQValidator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUpdatesWidget.cpp.new copasi/UI/CQUpdatesWidget.cpp + touch -r copasi/UI/CQUpdatesWidget.cpp copasi/UI/CQUpdatesWidget.cpp.new + mv copasi/UI/CQUpdatesWidget.cpp.new copasi/UI/CQUpdatesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUpdateAvogadro.cpp.new copasi/UI/CQUpdateAvogadro.cpp + touch -r copasi/UI/CQUpdateAvogadro.cpp copasi/UI/CQUpdateAvogadro.cpp.new + mv copasi/UI/CQUpdateAvogadro.cpp.new copasi/UI/CQUpdateAvogadro.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUnitsWidget.cpp.new copasi/UI/CQUnitsWidget.cpp + touch -r copasi/UI/CQUnitsWidget.cpp copasi/UI/CQUnitsWidget.cpp.new + mv copasi/UI/CQUnitsWidget.cpp.new copasi/UI/CQUnitsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUnitDetail.cpp.new copasi/UI/CQUnitDetail.cpp + touch -r copasi/UI/CQUnitDetail.cpp copasi/UI/CQUnitDetail.cpp.new + mv copasi/UI/CQUnitDetail.cpp.new copasi/UI/CQUnitDetail.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUnitDM.cpp.new copasi/UI/CQUnitDM.cpp + touch -r copasi/UI/CQUnitDM.cpp copasi/UI/CQUnitDM.cpp.new + mv copasi/UI/CQUnitDM.cpp.new copasi/UI/CQUnitDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQUndoTester.cpp.new copasi/UI/CQUndoTester.cpp + touch -r copasi/UI/CQUndoTester.cpp copasi/UI/CQUndoTester.cpp.new + mv copasi/UI/CQUndoTester.cpp.new copasi/UI/CQUndoTester.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTrajectoryWidget.cpp.new copasi/UI/CQTrajectoryWidget.cpp + touch -r copasi/UI/CQTrajectoryWidget.cpp copasi/UI/CQTrajectoryWidget.cpp.new + mv copasi/UI/CQTrajectoryWidget.cpp.new copasi/UI/CQTrajectoryWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTimeSeriesWidget.cpp.new copasi/UI/CQTimeSeriesWidget.cpp + touch -r copasi/UI/CQTimeSeriesWidget.cpp copasi/UI/CQTimeSeriesWidget.cpp.new + mv copasi/UI/CQTimeSeriesWidget.cpp.new copasi/UI/CQTimeSeriesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTimeSeriesDM.cpp.new copasi/UI/CQTimeSeriesDM.cpp + touch -r copasi/UI/CQTimeSeriesDM.cpp copasi/UI/CQTimeSeriesDM.cpp.new + mv copasi/UI/CQTimeSeriesDM.cpp.new copasi/UI/CQTimeSeriesDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTimeSensWidget.cpp.new copasi/UI/CQTimeSensWidget.cpp + touch -r copasi/UI/CQTimeSensWidget.cpp copasi/UI/CQTimeSensWidget.cpp.new + mv copasi/UI/CQTimeSensWidget.cpp.new copasi/UI/CQTimeSensWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQThread.cpp.new copasi/UI/CQThread.cpp + touch -r copasi/UI/CQThread.cpp copasi/UI/CQThread.cpp.new + mv copasi/UI/CQThread.cpp.new copasi/UI/CQThread.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTextDialog.cpp.new copasi/UI/CQTextDialog.cpp + touch -r copasi/UI/CQTextDialog.cpp copasi/UI/CQTextDialog.cpp.new + mv copasi/UI/CQTextDialog.cpp.new copasi/UI/CQTextDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskThread.cpp.new copasi/UI/CQTaskThread.cpp + touch -r copasi/UI/CQTaskThread.cpp copasi/UI/CQTaskThread.cpp.new + mv copasi/UI/CQTaskThread.cpp.new copasi/UI/CQTaskThread.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskMethodWidget.cpp.new copasi/UI/CQTaskMethodWidget.cpp + touch -r copasi/UI/CQTaskMethodWidget.cpp copasi/UI/CQTaskMethodWidget.cpp.new + mv copasi/UI/CQTaskMethodWidget.cpp.new copasi/UI/CQTaskMethodWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskHeaderWidget.cpp.new copasi/UI/CQTaskHeaderWidget.cpp + touch -r copasi/UI/CQTaskHeaderWidget.cpp copasi/UI/CQTaskHeaderWidget.cpp.new + mv copasi/UI/CQTaskHeaderWidget.cpp.new copasi/UI/CQTaskHeaderWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTaskBtnWidget.cpp.new copasi/UI/CQTaskBtnWidget.cpp + touch -r copasi/UI/CQTaskBtnWidget.cpp copasi/UI/CQTaskBtnWidget.cpp.new + mv copasi/UI/CQTaskBtnWidget.cpp.new copasi/UI/CQTaskBtnWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTableWidget.cpp.new copasi/UI/CQTableWidget.cpp + touch -r copasi/UI/CQTableWidget.cpp copasi/UI/CQTableWidget.cpp.new + mv copasi/UI/CQTableWidget.cpp.new copasi/UI/CQTableWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTableView.cpp.new copasi/UI/CQTableView.cpp + touch -r copasi/UI/CQTableView.cpp copasi/UI/CQTableView.cpp.new + mv copasi/UI/CQTableView.cpp.new copasi/UI/CQTableView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTabWidget.cpp.new copasi/UI/CQTabWidget.cpp + touch -r copasi/UI/CQTabWidget.cpp copasi/UI/CQTabWidget.cpp.new + mv copasi/UI/CQTabWidget.cpp.new copasi/UI/CQTabWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSAWidget.cpp.new copasi/UI/CQTSSAWidget.cpp + touch -r copasi/UI/CQTSSAWidget.cpp copasi/UI/CQTSSAWidget.cpp.new + mv copasi/UI/CQTSSAWidget.cpp.new copasi/UI/CQTSSAWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSATimeScaleWidget.cpp.new copasi/UI/CQTSSATimeScaleWidget.cpp + touch -r copasi/UI/CQTSSATimeScaleWidget.cpp copasi/UI/CQTSSATimeScaleWidget.cpp.new + mv copasi/UI/CQTSSATimeScaleWidget.cpp.new copasi/UI/CQTSSATimeScaleWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSAResultWidget.cpp.new copasi/UI/CQTSSAResultWidget.cpp + touch -r copasi/UI/CQTSSAResultWidget.cpp copasi/UI/CQTSSAResultWidget.cpp.new + mv copasi/UI/CQTSSAResultWidget.cpp.new copasi/UI/CQTSSAResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQTSSAResultSubWidget.cpp.new copasi/UI/CQTSSAResultSubWidget.cpp + touch -r copasi/UI/CQTSSAResultSubWidget.cpp copasi/UI/CQTSSAResultSubWidget.cpp.new + mv copasi/UI/CQTSSAResultSubWidget.cpp.new copasi/UI/CQTSSAResultSubWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSteadyStateResult.cpp.new copasi/UI/CQSteadyStateResult.cpp + touch -r copasi/UI/CQSteadyStateResult.cpp copasi/UI/CQSteadyStateResult.cpp.new + mv copasi/UI/CQSteadyStateResult.cpp.new copasi/UI/CQSteadyStateResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQStartValueReset.cpp.new copasi/UI/CQStartValueReset.cpp + touch -r copasi/UI/CQStartValueReset.cpp copasi/UI/CQStartValueReset.cpp.new + mv copasi/UI/CQStartValueReset.cpp.new copasi/UI/CQStartValueReset.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSplashWidget.cpp.new copasi/UI/CQSplashWidget.cpp + touch -r copasi/UI/CQSplashWidget.cpp copasi/UI/CQSplashWidget.cpp.new + mv copasi/UI/CQSplashWidget.cpp.new copasi/UI/CQSplashWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpinBoxDelegate.cpp.new copasi/UI/CQSpinBoxDelegate.cpp + touch -r copasi/UI/CQSpinBoxDelegate.cpp copasi/UI/CQSpinBoxDelegate.cpp.new + mv copasi/UI/CQSpinBoxDelegate.cpp.new copasi/UI/CQSpinBoxDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpeciesWidget.cpp.new copasi/UI/CQSpeciesWidget.cpp + touch -r copasi/UI/CQSpeciesWidget.cpp copasi/UI/CQSpeciesWidget.cpp.new + mv copasi/UI/CQSpeciesWidget.cpp.new copasi/UI/CQSpeciesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpeciesDetail.cpp.new copasi/UI/CQSpeciesDetail.cpp + touch -r copasi/UI/CQSpeciesDetail.cpp copasi/UI/CQSpeciesDetail.cpp.new + mv copasi/UI/CQSpeciesDetail.cpp.new copasi/UI/CQSpeciesDetail.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSpecieDM.cpp.new copasi/UI/CQSpecieDM.cpp + touch -r copasi/UI/CQSpecieDM.cpp copasi/UI/CQSpecieDM.cpp.new + mv copasi/UI/CQSpecieDM.cpp.new copasi/UI/CQSpecieDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSortFilterProxyModel.cpp.new copasi/UI/CQSortFilterProxyModel.cpp + touch -r copasi/UI/CQSortFilterProxyModel.cpp copasi/UI/CQSortFilterProxyModel.cpp.new + mv copasi/UI/CQSortFilterProxyModel.cpp.new copasi/UI/CQSortFilterProxyModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSimpleSelectionTree.cpp.new copasi/UI/CQSimpleSelectionTree.cpp + touch -r copasi/UI/CQSimpleSelectionTree.cpp copasi/UI/CQSimpleSelectionTree.cpp.new + mv copasi/UI/CQSimpleSelectionTree.cpp.new copasi/UI/CQSimpleSelectionTree.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSensResultWidget.cpp.new copasi/UI/CQSensResultWidget.cpp + touch -r copasi/UI/CQSensResultWidget.cpp copasi/UI/CQSensResultWidget.cpp.new + mv copasi/UI/CQSensResultWidget.cpp.new copasi/UI/CQSensResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQScrolledDependenciesWidget.cpp.new copasi/UI/CQScrolledDependenciesWidget.cpp + touch -r copasi/UI/CQScrolledDependenciesWidget.cpp copasi/UI/CQScrolledDependenciesWidget.cpp.new + mv copasi/UI/CQScrolledDependenciesWidget.cpp.new copasi/UI/CQScrolledDependenciesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQScanWidgetParameterSet.cpp.new copasi/UI/CQScanWidgetParameterSet.cpp + touch -r copasi/UI/CQScanWidgetParameterSet.cpp copasi/UI/CQScanWidgetParameterSet.cpp.new + mv copasi/UI/CQScanWidgetParameterSet.cpp.new copasi/UI/CQScanWidgetParameterSet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSEDMLImportDialog.cpp.new copasi/UI/CQSEDMLImportDialog.cpp + touch -r copasi/UI/CQSEDMLImportDialog.cpp copasi/UI/CQSEDMLImportDialog.cpp.new + mv copasi/UI/CQSEDMLImportDialog.cpp.new copasi/UI/CQSEDMLImportDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSEDMLFileDialog.cpp.new copasi/UI/CQSEDMLFileDialog.cpp + touch -r copasi/UI/CQSEDMLFileDialog.cpp copasi/UI/CQSEDMLFileDialog.cpp.new + mv copasi/UI/CQSEDMLFileDialog.cpp.new copasi/UI/CQSEDMLFileDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQSBMLFileDialog.cpp.new copasi/UI/CQSBMLFileDialog.cpp + touch -r copasi/UI/CQSBMLFileDialog.cpp copasi/UI/CQSBMLFileDialog.cpp.new + mv copasi/UI/CQSBMLFileDialog.cpp.new copasi/UI/CQSBMLFileDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportsWidget.cpp.new copasi/UI/CQReportsWidget.cpp + touch -r copasi/UI/CQReportsWidget.cpp copasi/UI/CQReportsWidget.cpp.new + mv copasi/UI/CQReportsWidget.cpp.new copasi/UI/CQReportsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportListItem.cpp.new copasi/UI/CQReportListItem.cpp + touch -r copasi/UI/CQReportListItem.cpp copasi/UI/CQReportListItem.cpp.new + mv copasi/UI/CQReportListItem.cpp.new copasi/UI/CQReportListItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportDefinitionSelect.cpp.new copasi/UI/CQReportDefinitionSelect.cpp + touch -r copasi/UI/CQReportDefinitionSelect.cpp copasi/UI/CQReportDefinitionSelect.cpp.new + mv copasi/UI/CQReportDefinitionSelect.cpp.new copasi/UI/CQReportDefinitionSelect.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportDefinition.cpp.new copasi/UI/CQReportDefinition.cpp + touch -r copasi/UI/CQReportDefinition.cpp copasi/UI/CQReportDefinition.cpp.new + mv copasi/UI/CQReportDefinition.cpp.new copasi/UI/CQReportDefinition.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReportDM.cpp.new copasi/UI/CQReportDM.cpp + touch -r copasi/UI/CQReportDM.cpp copasi/UI/CQReportDM.cpp.new + mv copasi/UI/CQReportDM.cpp.new copasi/UI/CQReportDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReactionsWidget.cpp.new copasi/UI/CQReactionsWidget.cpp + touch -r copasi/UI/CQReactionsWidget.cpp copasi/UI/CQReactionsWidget.cpp.new + mv copasi/UI/CQReactionsWidget.cpp.new copasi/UI/CQReactionsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQReactionDM.cpp.new copasi/UI/CQReactionDM.cpp + touch -r copasi/UI/CQReactionDM.cpp copasi/UI/CQReactionDM.cpp.new + mv copasi/UI/CQReactionDM.cpp.new copasi/UI/CQReactionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPushButtonDelegate.cpp.new copasi/UI/CQPushButtonDelegate.cpp + touch -r copasi/UI/CQPushButtonDelegate.cpp copasi/UI/CQPushButtonDelegate.cpp.new + mv copasi/UI/CQPushButtonDelegate.cpp.new copasi/UI/CQPushButtonDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressItemText.cpp.new copasi/UI/CQProgressItemText.cpp + touch -r copasi/UI/CQProgressItemText.cpp copasi/UI/CQProgressItemText.cpp.new + mv copasi/UI/CQProgressItemText.cpp.new copasi/UI/CQProgressItemText.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressItemBar.cpp.new copasi/UI/CQProgressItemBar.cpp + touch -r copasi/UI/CQProgressItemBar.cpp copasi/UI/CQProgressItemBar.cpp.new + mv copasi/UI/CQProgressItemBar.cpp.new copasi/UI/CQProgressItemBar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressItem.cpp.new copasi/UI/CQProgressItem.cpp + touch -r copasi/UI/CQProgressItem.cpp copasi/UI/CQProgressItem.cpp.new + mv copasi/UI/CQProgressItem.cpp.new copasi/UI/CQProgressItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQProgressDialog.cpp.new copasi/UI/CQProgressDialog.cpp + touch -r copasi/UI/CQProgressDialog.cpp copasi/UI/CQProgressDialog.cpp.new + mv copasi/UI/CQProgressDialog.cpp.new copasi/UI/CQProgressDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPreferenceDialog.cpp.new copasi/UI/CQPreferenceDialog.cpp + touch -r copasi/UI/CQPreferenceDialog.cpp copasi/UI/CQPreferenceDialog.cpp.new + mv copasi/UI/CQPreferenceDialog.cpp.new copasi/UI/CQPreferenceDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPlotsWidget.cpp.new copasi/UI/CQPlotsWidget.cpp + touch -r copasi/UI/CQPlotsWidget.cpp copasi/UI/CQPlotsWidget.cpp.new + mv copasi/UI/CQPlotsWidget.cpp.new copasi/UI/CQPlotsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQPlotDM.cpp.new copasi/UI/CQPlotDM.cpp + touch -r copasi/UI/CQPlotDM.cpp copasi/UI/CQPlotDM.cpp.new + mv copasi/UI/CQPlotDM.cpp.new copasi/UI/CQPlotDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterSetsWidget.cpp.new copasi/UI/CQParameterSetsWidget.cpp + touch -r copasi/UI/CQParameterSetsWidget.cpp copasi/UI/CQParameterSetsWidget.cpp.new + mv copasi/UI/CQParameterSetsWidget.cpp.new copasi/UI/CQParameterSetsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterSetsDM.cpp.new copasi/UI/CQParameterSetsDM.cpp + touch -r copasi/UI/CQParameterSetsDM.cpp copasi/UI/CQParameterSetsDM.cpp.new + mv copasi/UI/CQParameterSetsDM.cpp.new copasi/UI/CQParameterSetsDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterResultItemModel.cpp.new copasi/UI/CQParameterResultItemModel.cpp + touch -r copasi/UI/CQParameterResultItemModel.cpp copasi/UI/CQParameterResultItemModel.cpp.new + mv copasi/UI/CQParameterResultItemModel.cpp.new copasi/UI/CQParameterResultItemModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterOverviewWidget.cpp.new copasi/UI/CQParameterOverviewWidget.cpp + touch -r copasi/UI/CQParameterOverviewWidget.cpp copasi/UI/CQParameterOverviewWidget.cpp.new + mv copasi/UI/CQParameterOverviewWidget.cpp.new copasi/UI/CQParameterOverviewWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterOverviewDM.cpp.new copasi/UI/CQParameterOverviewDM.cpp + touch -r copasi/UI/CQParameterOverviewDM.cpp copasi/UI/CQParameterOverviewDM.cpp.new + mv copasi/UI/CQParameterOverviewDM.cpp.new copasi/UI/CQParameterOverviewDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterGroupView.cpp.new copasi/UI/CQParameterGroupView.cpp + touch -r copasi/UI/CQParameterGroupView.cpp copasi/UI/CQParameterGroupView.cpp.new + mv copasi/UI/CQParameterGroupView.cpp.new copasi/UI/CQParameterGroupView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterGroupDM.cpp.new copasi/UI/CQParameterGroupDM.cpp + touch -r copasi/UI/CQParameterGroupDM.cpp copasi/UI/CQParameterGroupDM.cpp.new + mv copasi/UI/CQParameterGroupDM.cpp.new copasi/UI/CQParameterGroupDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQParameterEstimationResult.cpp.new copasi/UI/CQParameterEstimationResult.cpp + touch -r copasi/UI/CQParameterEstimationResult.cpp copasi/UI/CQParameterEstimationResult.cpp.new + mv copasi/UI/CQParameterEstimationResult.cpp.new copasi/UI/CQParameterEstimationResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOscillationTaskWidget.cpp.new copasi/UI/CQOscillationTaskWidget.cpp + touch -r copasi/UI/CQOscillationTaskWidget.cpp copasi/UI/CQOscillationTaskWidget.cpp.new + mv copasi/UI/CQOscillationTaskWidget.cpp.new copasi/UI/CQOscillationTaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOptimizationWidget.cpp.new copasi/UI/CQOptimizationWidget.cpp + touch -r copasi/UI/CQOptimizationWidget.cpp copasi/UI/CQOptimizationWidget.cpp.new + mv copasi/UI/CQOptimizationWidget.cpp.new copasi/UI/CQOptimizationWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOptimizationResult.cpp.new copasi/UI/CQOptimizationResult.cpp + touch -r copasi/UI/CQOptimizationResult.cpp copasi/UI/CQOptimizationResult.cpp.new + mv copasi/UI/CQOptimizationResult.cpp.new copasi/UI/CQOptimizationResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQOptPopulation.cpp.new copasi/UI/CQOptPopulation.cpp + touch -r copasi/UI/CQOptPopulation.cpp copasi/UI/CQOptPopulation.cpp.new + mv copasi/UI/CQOptPopulation.cpp.new copasi/UI/CQOptPopulation.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQNotes.cpp.new copasi/UI/CQNotes.cpp + touch -r copasi/UI/CQNotes.cpp copasi/UI/CQNotes.cpp.new + mv copasi/UI/CQNotes.cpp.new copasi/UI/CQNotes.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQNameSelectionDialog.cpp.new copasi/UI/CQNameSelectionDialog.cpp + touch -r copasi/UI/CQNameSelectionDialog.cpp copasi/UI/CQNameSelectionDialog.cpp.new + mv copasi/UI/CQNameSelectionDialog.cpp.new copasi/UI/CQNameSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMultipleSelectionDialog.cpp.new copasi/UI/CQMultipleSelectionDialog.cpp + touch -r copasi/UI/CQMultipleSelectionDialog.cpp copasi/UI/CQMultipleSelectionDialog.cpp.new + mv copasi/UI/CQMultipleSelectionDialog.cpp.new copasi/UI/CQMultipleSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMoietiesTaskWidget.cpp.new copasi/UI/CQMoietiesTaskWidget.cpp + touch -r copasi/UI/CQMoietiesTaskWidget.cpp copasi/UI/CQMoietiesTaskWidget.cpp.new + mv copasi/UI/CQMoietiesTaskWidget.cpp.new copasi/UI/CQMoietiesTaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMoietiesTaskResult.cpp.new copasi/UI/CQMoietiesTaskResult.cpp + touch -r copasi/UI/CQMoietiesTaskResult.cpp copasi/UI/CQMoietiesTaskResult.cpp.new + mv copasi/UI/CQMoietiesTaskResult.cpp.new copasi/UI/CQMoietiesTaskResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQModelWidget.cpp.new copasi/UI/CQModelWidget.cpp + touch -r copasi/UI/CQModelWidget.cpp copasi/UI/CQModelWidget.cpp.new + mv copasi/UI/CQModelWidget.cpp.new copasi/UI/CQModelWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQModelValue.cpp.new copasi/UI/CQModelValue.cpp + touch -r copasi/UI/CQModelValue.cpp copasi/UI/CQModelValue.cpp.new + mv copasi/UI/CQModelValue.cpp.new copasi/UI/CQModelValue.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMmlScrollView.cpp.new copasi/UI/CQMmlScrollView.cpp + touch -r copasi/UI/CQMmlScrollView.cpp copasi/UI/CQMmlScrollView.cpp.new + mv copasi/UI/CQMmlScrollView.cpp.new copasi/UI/CQMmlScrollView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMessageBox.cpp.new copasi/UI/CQMessageBox.cpp + touch -r copasi/UI/CQMessageBox.cpp copasi/UI/CQMessageBox.cpp.new + mv copasi/UI/CQMessageBox.cpp.new copasi/UI/CQMessageBox.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMergingData.cpp.new copasi/UI/CQMergingData.cpp + touch -r copasi/UI/CQMergingData.cpp copasi/UI/CQMergingData.cpp.new + mv copasi/UI/CQMergingData.cpp.new copasi/UI/CQMergingData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMatrixDialog.cpp.new copasi/UI/CQMatrixDialog.cpp + touch -r copasi/UI/CQMatrixDialog.cpp copasi/UI/CQMatrixDialog.cpp.new + mv copasi/UI/CQMatrixDialog.cpp.new copasi/UI/CQMatrixDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMathMatrixWidget.cpp.new copasi/UI/CQMathMatrixWidget.cpp + touch -r copasi/UI/CQMathMatrixWidget.cpp copasi/UI/CQMathMatrixWidget.cpp.new + mv copasi/UI/CQMathMatrixWidget.cpp.new copasi/UI/CQMathMatrixWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQMCAWidget.cpp.new copasi/UI/CQMCAWidget.cpp + touch -r copasi/UI/CQMCAWidget.cpp copasi/UI/CQMCAWidget.cpp.new + mv copasi/UI/CQMCAWidget.cpp.new copasi/UI/CQMCAWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLyapWidget.cpp.new copasi/UI/CQLyapWidget.cpp + touch -r copasi/UI/CQLyapWidget.cpp copasi/UI/CQLyapWidget.cpp.new + mv copasi/UI/CQLyapWidget.cpp.new copasi/UI/CQLyapWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLyapResultWidget.cpp.new copasi/UI/CQLyapResultWidget.cpp + touch -r copasi/UI/CQLyapResultWidget.cpp copasi/UI/CQLyapResultWidget.cpp.new + mv copasi/UI/CQLyapResultWidget.cpp.new copasi/UI/CQLyapResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLayoutsWidget.cpp.new copasi/UI/CQLayoutsWidget.cpp + touch -r copasi/UI/CQLayoutsWidget.cpp copasi/UI/CQLayoutsWidget.cpp.new + mv copasi/UI/CQLayoutsWidget.cpp.new copasi/UI/CQLayoutsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLayoutsDM.cpp.new copasi/UI/CQLayoutsDM.cpp + touch -r copasi/UI/CQLayoutsDM.cpp copasi/UI/CQLayoutsDM.cpp.new + mv copasi/UI/CQLayoutsDM.cpp.new copasi/UI/CQLayoutsDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQLNAWidget.cpp.new copasi/UI/CQLNAWidget.cpp + touch -r copasi/UI/CQLNAWidget.cpp copasi/UI/CQLNAWidget.cpp.new + mv copasi/UI/CQLNAWidget.cpp.new copasi/UI/CQLNAWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQGlobalQuantityDM.cpp.new copasi/UI/CQGlobalQuantityDM.cpp + touch -r copasi/UI/CQGlobalQuantityDM.cpp copasi/UI/CQGlobalQuantityDM.cpp.new + mv copasi/UI/CQGlobalQuantityDM.cpp.new copasi/UI/CQGlobalQuantityDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQGlobalQuantitiesWidget.cpp.new copasi/UI/CQGlobalQuantitiesWidget.cpp + touch -r copasi/UI/CQGlobalQuantitiesWidget.cpp copasi/UI/CQGlobalQuantitiesWidget.cpp.new + mv copasi/UI/CQGlobalQuantitiesWidget.cpp.new copasi/UI/CQGlobalQuantitiesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFunctionsWidget.cpp.new copasi/UI/CQFunctionsWidget.cpp + touch -r copasi/UI/CQFunctionsWidget.cpp copasi/UI/CQFunctionsWidget.cpp.new + mv copasi/UI/CQFunctionsWidget.cpp.new copasi/UI/CQFunctionsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFunctionDM.cpp.new copasi/UI/CQFunctionDM.cpp + touch -r copasi/UI/CQFunctionDM.cpp copasi/UI/CQFunctionDM.cpp.new + mv copasi/UI/CQFunctionDM.cpp.new copasi/UI/CQFunctionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFluxModeDM.cpp.new copasi/UI/CQFluxModeDM.cpp + touch -r copasi/UI/CQFluxModeDM.cpp copasi/UI/CQFluxModeDM.cpp.new + mv copasi/UI/CQFluxModeDM.cpp.new copasi/UI/CQFluxModeDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingWidget.cpp.new copasi/UI/CQFittingWidget.cpp + touch -r copasi/UI/CQFittingWidget.cpp copasi/UI/CQFittingWidget.cpp.new + mv copasi/UI/CQFittingWidget.cpp.new copasi/UI/CQFittingWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingResultTab1.cpp.new copasi/UI/CQFittingResultTab1.cpp + touch -r copasi/UI/CQFittingResultTab1.cpp copasi/UI/CQFittingResultTab1.cpp.new + mv copasi/UI/CQFittingResultTab1.cpp.new copasi/UI/CQFittingResultTab1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingResult.cpp.new copasi/UI/CQFittingResult.cpp + touch -r copasi/UI/CQFittingResult.cpp copasi/UI/CQFittingResult.cpp.new + mv copasi/UI/CQFittingResult.cpp.new copasi/UI/CQFittingResult.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQFittingItemWidget.cpp.new copasi/UI/CQFittingItemWidget.cpp + touch -r copasi/UI/CQFittingItemWidget.cpp copasi/UI/CQFittingItemWidget.cpp.new + mv copasi/UI/CQFittingItemWidget.cpp.new copasi/UI/CQFittingItemWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExpressionWidget.cpp.new copasi/UI/CQExpressionWidget.cpp + touch -r copasi/UI/CQExpressionWidget.cpp copasi/UI/CQExpressionWidget.cpp.new + mv copasi/UI/CQExpressionWidget.cpp.new copasi/UI/CQExpressionWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExpressionMmlStackedWidget.cpp.new copasi/UI/CQExpressionMmlStackedWidget.cpp + touch -r copasi/UI/CQExpressionMmlStackedWidget.cpp copasi/UI/CQExpressionMmlStackedWidget.cpp.new + mv copasi/UI/CQExpressionMmlStackedWidget.cpp.new copasi/UI/CQExpressionMmlStackedWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExperimentSelection.cpp.new copasi/UI/CQExperimentSelection.cpp + touch -r copasi/UI/CQExperimentSelection.cpp copasi/UI/CQExperimentSelection.cpp.new + mv copasi/UI/CQExperimentSelection.cpp.new copasi/UI/CQExperimentSelection.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExperimentData.cpp.new copasi/UI/CQExperimentData.cpp + touch -r copasi/UI/CQExperimentData.cpp copasi/UI/CQExperimentData.cpp.new + mv copasi/UI/CQExperimentData.cpp.new copasi/UI/CQExperimentData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQExpandModelData.cpp.new copasi/UI/CQExpandModelData.cpp + touch -r copasi/UI/CQExpandModelData.cpp copasi/UI/CQExpandModelData.cpp.new + mv copasi/UI/CQExpandModelData.cpp.new copasi/UI/CQExpandModelData.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEventsWidget.cpp.new copasi/UI/CQEventsWidget.cpp + touch -r copasi/UI/CQEventsWidget.cpp copasi/UI/CQEventsWidget.cpp.new + mv copasi/UI/CQEventsWidget.cpp.new copasi/UI/CQEventsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEventWidget1.cpp.new copasi/UI/CQEventWidget1.cpp + touch -r copasi/UI/CQEventWidget1.cpp copasi/UI/CQEventWidget1.cpp.new + mv copasi/UI/CQEventWidget1.cpp.new copasi/UI/CQEventWidget1.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEventDM.cpp.new copasi/UI/CQEventDM.cpp + touch -r copasi/UI/CQEventDM.cpp copasi/UI/CQEventDM.cpp.new + mv copasi/UI/CQEventDM.cpp.new copasi/UI/CQEventDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMWidget.cpp.new copasi/UI/CQEFMWidget.cpp + touch -r copasi/UI/CQEFMWidget.cpp copasi/UI/CQEFMWidget.cpp.new + mv copasi/UI/CQEFMWidget.cpp.new copasi/UI/CQEFMWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMSpeciesDM.cpp.new copasi/UI/CQEFMSpeciesDM.cpp + touch -r copasi/UI/CQEFMSpeciesDM.cpp copasi/UI/CQEFMSpeciesDM.cpp.new + mv copasi/UI/CQEFMSpeciesDM.cpp.new copasi/UI/CQEFMSpeciesDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMResultWidget.cpp.new copasi/UI/CQEFMResultWidget.cpp + touch -r copasi/UI/CQEFMResultWidget.cpp copasi/UI/CQEFMResultWidget.cpp.new + mv copasi/UI/CQEFMResultWidget.cpp.new copasi/UI/CQEFMResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMReactionDM.cpp.new copasi/UI/CQEFMReactionDM.cpp + touch -r copasi/UI/CQEFMReactionDM.cpp copasi/UI/CQEFMReactionDM.cpp.new + mv copasi/UI/CQEFMReactionDM.cpp.new copasi/UI/CQEFMReactionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMNetReactionDM.cpp.new copasi/UI/CQEFMNetReactionDM.cpp + touch -r copasi/UI/CQEFMNetReactionDM.cpp copasi/UI/CQEFMNetReactionDM.cpp.new + mv copasi/UI/CQEFMNetReactionDM.cpp.new copasi/UI/CQEFMNetReactionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQEFMListWidget.cpp.new copasi/UI/CQEFMListWidget.cpp + touch -r copasi/UI/CQEFMListWidget.cpp copasi/UI/CQEFMListWidget.cpp.new + mv copasi/UI/CQEFMListWidget.cpp.new copasi/UI/CQEFMListWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDifferentialEquations.cpp.new copasi/UI/CQDifferentialEquations.cpp + touch -r copasi/UI/CQDifferentialEquations.cpp copasi/UI/CQDifferentialEquations.cpp.new + mv copasi/UI/CQDifferentialEquations.cpp.new copasi/UI/CQDifferentialEquations.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDependencyWidget.cpp.new copasi/UI/CQDependencyWidget.cpp + touch -r copasi/UI/CQDependencyWidget.cpp copasi/UI/CQDependencyWidget.cpp.new + mv copasi/UI/CQDependencyWidget.cpp.new copasi/UI/CQDependencyWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDependencyDialog.cpp.new copasi/UI/CQDependencyDialog.cpp + touch -r copasi/UI/CQDependencyDialog.cpp copasi/UI/CQDependencyDialog.cpp.new + mv copasi/UI/CQDependencyDialog.cpp.new copasi/UI/CQDependencyDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDependenciesWidget.cpp.new copasi/UI/CQDependenciesWidget.cpp + touch -r copasi/UI/CQDependenciesWidget.cpp copasi/UI/CQDependenciesWidget.cpp.new + mv copasi/UI/CQDependenciesWidget.cpp.new copasi/UI/CQDependenciesWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQDateTimeEditDelegate.cpp.new copasi/UI/CQDateTimeEditDelegate.cpp + touch -r copasi/UI/CQDateTimeEditDelegate.cpp copasi/UI/CQDateTimeEditDelegate.cpp.new + mv copasi/UI/CQDateTimeEditDelegate.cpp.new copasi/UI/CQDateTimeEditDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCrossSectionTaskWidget.cpp.new copasi/UI/CQCrossSectionTaskWidget.cpp + touch -r copasi/UI/CQCrossSectionTaskWidget.cpp copasi/UI/CQCrossSectionTaskWidget.cpp.new + mv copasi/UI/CQCrossSectionTaskWidget.cpp.new copasi/UI/CQCrossSectionTaskWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCopasiApplication.cpp.new copasi/UI/CQCopasiApplication.cpp + touch -r copasi/UI/CQCopasiApplication.cpp copasi/UI/CQCopasiApplication.cpp.new + mv copasi/UI/CQCopasiApplication.cpp.new copasi/UI/CQCopasiApplication.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartmentsWidget.cpp.new copasi/UI/CQCompartmentsWidget.cpp + touch -r copasi/UI/CQCompartmentsWidget.cpp copasi/UI/CQCompartmentsWidget.cpp.new + mv copasi/UI/CQCompartmentsWidget.cpp.new copasi/UI/CQCompartmentsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartmentDM.cpp.new copasi/UI/CQCompartmentDM.cpp + touch -r copasi/UI/CQCompartmentDM.cpp copasi/UI/CQCompartmentDM.cpp.new + mv copasi/UI/CQCompartmentDM.cpp.new copasi/UI/CQCompartmentDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartmentCopyOptions.cpp.new copasi/UI/CQCompartmentCopyOptions.cpp + touch -r copasi/UI/CQCompartmentCopyOptions.cpp copasi/UI/CQCompartmentCopyOptions.cpp.new + mv copasi/UI/CQCompartmentCopyOptions.cpp.new copasi/UI/CQCompartmentCopyOptions.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCompartment.cpp.new copasi/UI/CQCompartment.cpp + touch -r copasi/UI/CQCompartment.cpp copasi/UI/CQCompartment.cpp.new + mv copasi/UI/CQCompartment.cpp.new copasi/UI/CQCompartment.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQComboDelegate.cpp.new copasi/UI/CQComboDelegate.cpp + touch -r copasi/UI/CQComboDelegate.cpp copasi/UI/CQComboDelegate.cpp.new + mv copasi/UI/CQComboDelegate.cpp.new copasi/UI/CQComboDelegate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQCheckModelWindow.cpp.new copasi/UI/CQCheckModelWindow.cpp + touch -r copasi/UI/CQCheckModelWindow.cpp copasi/UI/CQCheckModelWindow.cpp.new + mv copasi/UI/CQCheckModelWindow.cpp.new copasi/UI/CQCheckModelWindow.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBrowserPaneDM.cpp.new copasi/UI/CQBrowserPaneDM.cpp + touch -r copasi/UI/CQBrowserPaneDM.cpp copasi/UI/CQBrowserPaneDM.cpp.new + mv copasi/UI/CQBrowserPaneDM.cpp.new copasi/UI/CQBrowserPaneDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBrowserPane.cpp.new copasi/UI/CQBrowserPane.cpp + touch -r copasi/UI/CQBrowserPane.cpp copasi/UI/CQBrowserPane.cpp.new + mv copasi/UI/CQBrowserPane.cpp.new copasi/UI/CQBrowserPane.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBaseTreeDataModel.cpp.new copasi/UI/CQBaseTreeDataModel.cpp + touch -r copasi/UI/CQBaseTreeDataModel.cpp copasi/UI/CQBaseTreeDataModel.cpp.new + mv copasi/UI/CQBaseTreeDataModel.cpp.new copasi/UI/CQBaseTreeDataModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQBaseDataModel.cpp.new copasi/UI/CQBaseDataModel.cpp + touch -r copasi/UI/CQBaseDataModel.cpp copasi/UI/CQBaseDataModel.cpp.new + mv copasi/UI/CQBaseDataModel.cpp.new copasi/UI/CQBaseDataModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQArrayAnnotationsWidgetDM.cpp.new copasi/UI/CQArrayAnnotationsWidgetDM.cpp + touch -r copasi/UI/CQArrayAnnotationsWidgetDM.cpp copasi/UI/CQArrayAnnotationsWidgetDM.cpp.new + mv copasi/UI/CQArrayAnnotationsWidgetDM.cpp.new copasi/UI/CQArrayAnnotationsWidgetDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQArrayAnnotationsWidget.cpp.new copasi/UI/CQArrayAnnotationsWidget.cpp + touch -r copasi/UI/CQArrayAnnotationsWidget.cpp copasi/UI/CQArrayAnnotationsWidget.cpp.new + mv copasi/UI/CQArrayAnnotationsWidget.cpp.new copasi/UI/CQArrayAnnotationsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CQAnalyticsWidget.cpp.new copasi/UI/CQAnalyticsWidget.cpp + touch -r copasi/UI/CQAnalyticsWidget.cpp copasi/UI/CQAnalyticsWidget.cpp.new + mv copasi/UI/CQAnalyticsWidget.cpp.new copasi/UI/CQAnalyticsWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CProvenanceDialog.cpp.new copasi/UI/CProvenanceDialog.cpp + touch -r copasi/UI/CProvenanceDialog.cpp copasi/UI/CProvenanceDialog.cpp.new + mv copasi/UI/CProvenanceDialog.cpp.new copasi/UI/CProvenanceDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CProgressBar.cpp.new copasi/UI/CProgressBar.cpp + touch -r copasi/UI/CProgressBar.cpp copasi/UI/CProgressBar.cpp.new + mv copasi/UI/CProgressBar.cpp.new copasi/UI/CProgressBar.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CMCAResultWidget.cpp.new copasi/UI/CMCAResultWidget.cpp + touch -r copasi/UI/CMCAResultWidget.cpp copasi/UI/CMCAResultWidget.cpp.new + mv copasi/UI/CMCAResultWidget.cpp.new copasi/UI/CMCAResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CMCAResultSubwidget.cpp.new copasi/UI/CMCAResultSubwidget.cpp + touch -r copasi/UI/CMCAResultSubwidget.cpp copasi/UI/CMCAResultSubwidget.cpp.new + mv copasi/UI/CMCAResultSubwidget.cpp.new copasi/UI/CMCAResultSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CLNAResultWidget.cpp.new copasi/UI/CLNAResultWidget.cpp + touch -r copasi/UI/CLNAResultWidget.cpp copasi/UI/CLNAResultWidget.cpp.new + mv copasi/UI/CLNAResultWidget.cpp.new copasi/UI/CLNAResultWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CLNAResultSubwidget.cpp.new copasi/UI/CLNAResultSubwidget.cpp + touch -r copasi/UI/CLNAResultSubwidget.cpp copasi/UI/CLNAResultSubwidget.cpp.new + mv copasi/UI/CLNAResultSubwidget.cpp.new copasi/UI/CLNAResultSubwidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CEntityProvenanceDialog.cpp.new copasi/UI/CEntityProvenanceDialog.cpp + touch -r copasi/UI/CEntityProvenanceDialog.cpp copasi/UI/CEntityProvenanceDialog.cpp.new + mv copasi/UI/CEntityProvenanceDialog.cpp.new copasi/UI/CEntityProvenanceDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiSelectionWidget.cpp.new copasi/UI/CCopasiSelectionWidget.cpp + touch -r copasi/UI/CCopasiSelectionWidget.cpp copasi/UI/CCopasiSelectionWidget.cpp.new + mv copasi/UI/CCopasiSelectionWidget.cpp.new copasi/UI/CCopasiSelectionWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiSelectionDialog.cpp.new copasi/UI/CCopasiSelectionDialog.cpp + touch -r copasi/UI/CCopasiSelectionDialog.cpp copasi/UI/CCopasiSelectionDialog.cpp.new + mv copasi/UI/CCopasiSelectionDialog.cpp.new copasi/UI/CCopasiSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiPlotSelectionDialog.cpp.new copasi/UI/CCopasiPlotSelectionDialog.cpp + touch -r copasi/UI/CCopasiPlotSelectionDialog.cpp copasi/UI/CCopasiPlotSelectionDialog.cpp.new + mv copasi/UI/CCopasiPlotSelectionDialog.cpp.new copasi/UI/CCopasiPlotSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CCopasiPlot2YSelectionDialog.cpp.new copasi/UI/CCopasiPlot2YSelectionDialog.cpp + touch -r copasi/UI/CCopasiPlot2YSelectionDialog.cpp copasi/UI/CCopasiPlot2YSelectionDialog.cpp.new + mv copasi/UI/CCopasiPlot2YSelectionDialog.cpp.new copasi/UI/CCopasiPlot2YSelectionDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/CColorScale.cpp.new copasi/UI/CColorScale.cpp + touch -r copasi/UI/CColorScale.cpp copasi/UI/CColorScale.cpp.new + mv copasi/UI/CColorScale.cpp.new copasi/UI/CColorScale.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/UI/AboutDialog.cpp.new copasi/UI/AboutDialog.cpp + touch -r copasi/UI/AboutDialog.cpp copasi/UI/AboutDialog.cpp.new + mv copasi/UI/AboutDialog.cpp.new copasi/UI/AboutDialog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/Provenance/CProvenanceXMLWriter.cpp.new copasi/Provenance/CProvenanceXMLWriter.cpp + touch -r copasi/Provenance/CProvenanceXMLWriter.cpp copasi/Provenance/CProvenanceXMLWriter.cpp.new + mv copasi/Provenance/CProvenanceXMLWriter.cpp.new copasi/Provenance/CProvenanceXMLWriter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/OpenMP/CRandomContext.cpp.new copasi/OpenMP/CRandomContext.cpp + touch -r copasi/OpenMP/CRandomContext.cpp copasi/OpenMP/CRandomContext.cpp.new + mv copasi/OpenMP/CRandomContext.cpp.new copasi/OpenMP/CRandomContext.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/OpenMP/CMathContext.cpp.new copasi/OpenMP/CMathContext.cpp + touch -r copasi/OpenMP/CMathContext.cpp copasi/OpenMP/CMathContext.cpp.new + mv copasi/OpenMP/CMathContext.cpp.new copasi/OpenMP/CMathContext.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/OpenMP/CContext.cpp.new copasi/OpenMP/CContext.cpp + touch -r copasi/OpenMP/CContext.cpp copasi/OpenMP/CContext.cpp.new + mv copasi/OpenMP/CContext.cpp.new copasi/OpenMP/CContext.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQReferenceDM.cpp.new copasi/MIRIAMUI/CQReferenceDM.cpp + touch -r copasi/MIRIAMUI/CQReferenceDM.cpp copasi/MIRIAMUI/CQReferenceDM.cpp.new + mv copasi/MIRIAMUI/CQReferenceDM.cpp.new copasi/MIRIAMUI/CQReferenceDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQRDFTreeViewItem.cpp.new copasi/MIRIAMUI/CQRDFTreeViewItem.cpp + touch -r copasi/MIRIAMUI/CQRDFTreeViewItem.cpp copasi/MIRIAMUI/CQRDFTreeViewItem.cpp.new + mv copasi/MIRIAMUI/CQRDFTreeViewItem.cpp.new copasi/MIRIAMUI/CQRDFTreeViewItem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQRDFTreeView.cpp.new copasi/MIRIAMUI/CQRDFTreeView.cpp + touch -r copasi/MIRIAMUI/CQRDFTreeView.cpp copasi/MIRIAMUI/CQRDFTreeView.cpp.new + mv copasi/MIRIAMUI/CQRDFTreeView.cpp.new copasi/MIRIAMUI/CQRDFTreeView.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQModifiedDM.cpp.new copasi/MIRIAMUI/CQModifiedDM.cpp + touch -r copasi/MIRIAMUI/CQModifiedDM.cpp copasi/MIRIAMUI/CQModifiedDM.cpp.new + mv copasi/MIRIAMUI/CQModifiedDM.cpp.new copasi/MIRIAMUI/CQModifiedDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQMiriamWidget.cpp.new copasi/MIRIAMUI/CQMiriamWidget.cpp + touch -r copasi/MIRIAMUI/CQMiriamWidget.cpp copasi/MIRIAMUI/CQMiriamWidget.cpp.new + mv copasi/MIRIAMUI/CQMiriamWidget.cpp.new copasi/MIRIAMUI/CQMiriamWidget.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQCreatorDM.cpp.new copasi/MIRIAMUI/CQCreatorDM.cpp + touch -r copasi/MIRIAMUI/CQCreatorDM.cpp copasi/MIRIAMUI/CQCreatorDM.cpp.new + mv copasi/MIRIAMUI/CQCreatorDM.cpp.new copasi/MIRIAMUI/CQCreatorDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp.new copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp + touch -r copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp.new + mv copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp.new copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CReference.cpp.new copasi/MIRIAM/CReference.cpp + touch -r copasi/MIRIAM/CReference.cpp copasi/MIRIAM/CReference.cpp.new + mv copasi/MIRIAM/CReference.cpp.new copasi/MIRIAM/CReference.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRaptorInit.cpp.new copasi/MIRIAM/CRaptorInit.cpp + touch -r copasi/MIRIAM/CRaptorInit.cpp copasi/MIRIAM/CRaptorInit.cpp.new + mv copasi/MIRIAM/CRaptorInit.cpp.new copasi/MIRIAM/CRaptorInit.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFWriter.cpp.new copasi/MIRIAM/CRDFWriter.cpp + touch -r copasi/MIRIAM/CRDFWriter.cpp copasi/MIRIAM/CRDFWriter.cpp.new + mv copasi/MIRIAM/CRDFWriter.cpp.new copasi/MIRIAM/CRDFWriter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFUtilities.cpp.new copasi/MIRIAM/CRDFUtilities.cpp + touch -r copasi/MIRIAM/CRDFUtilities.cpp copasi/MIRIAM/CRDFUtilities.cpp.new + mv copasi/MIRIAM/CRDFUtilities.cpp.new copasi/MIRIAM/CRDFUtilities.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFTriplet.cpp.new copasi/MIRIAM/CRDFTriplet.cpp + touch -r copasi/MIRIAM/CRDFTriplet.cpp copasi/MIRIAM/CRDFTriplet.cpp.new + mv copasi/MIRIAM/CRDFTriplet.cpp.new copasi/MIRIAM/CRDFTriplet.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFSubject.cpp.new copasi/MIRIAM/CRDFSubject.cpp + touch -r copasi/MIRIAM/CRDFSubject.cpp copasi/MIRIAM/CRDFSubject.cpp.new + mv copasi/MIRIAM/CRDFSubject.cpp.new copasi/MIRIAM/CRDFSubject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFPredicate.cpp.new copasi/MIRIAM/CRDFPredicate.cpp + touch -r copasi/MIRIAM/CRDFPredicate.cpp copasi/MIRIAM/CRDFPredicate.cpp.new + mv copasi/MIRIAM/CRDFPredicate.cpp.new copasi/MIRIAM/CRDFPredicate.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFParser.cpp.new copasi/MIRIAM/CRDFParser.cpp + touch -r copasi/MIRIAM/CRDFParser.cpp copasi/MIRIAM/CRDFParser.cpp.new + mv copasi/MIRIAM/CRDFParser.cpp.new copasi/MIRIAM/CRDFParser.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFObject.cpp.new copasi/MIRIAM/CRDFObject.cpp + touch -r copasi/MIRIAM/CRDFObject.cpp copasi/MIRIAM/CRDFObject.cpp.new + mv copasi/MIRIAM/CRDFObject.cpp.new copasi/MIRIAM/CRDFObject.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFNode.cpp.new copasi/MIRIAM/CRDFNode.cpp + touch -r copasi/MIRIAM/CRDFNode.cpp copasi/MIRIAM/CRDFNode.cpp.new + mv copasi/MIRIAM/CRDFNode.cpp.new copasi/MIRIAM/CRDFNode.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFLiteral.cpp.new copasi/MIRIAM/CRDFLiteral.cpp + touch -r copasi/MIRIAM/CRDFLiteral.cpp copasi/MIRIAM/CRDFLiteral.cpp.new + mv copasi/MIRIAM/CRDFLiteral.cpp.new copasi/MIRIAM/CRDFLiteral.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFGraphConverter.cpp.new copasi/MIRIAM/CRDFGraphConverter.cpp + touch -r copasi/MIRIAM/CRDFGraphConverter.cpp copasi/MIRIAM/CRDFGraphConverter.cpp.new + mv copasi/MIRIAM/CRDFGraphConverter.cpp.new copasi/MIRIAM/CRDFGraphConverter.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CRDFGraph.cpp.new copasi/MIRIAM/CRDFGraph.cpp + touch -r copasi/MIRIAM/CRDFGraph.cpp copasi/MIRIAM/CRDFGraph.cpp.new + mv copasi/MIRIAM/CRDFGraph.cpp.new copasi/MIRIAM/CRDFGraph.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CModified.cpp.new copasi/MIRIAM/CModified.cpp + touch -r copasi/MIRIAM/CModified.cpp copasi/MIRIAM/CModified.cpp.new + mv copasi/MIRIAM/CModified.cpp.new copasi/MIRIAM/CModified.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CModelMIRIAMInfo.cpp.new copasi/MIRIAM/CModelMIRIAMInfo.cpp + touch -r copasi/MIRIAM/CModelMIRIAMInfo.cpp copasi/MIRIAM/CModelMIRIAMInfo.cpp.new + mv copasi/MIRIAM/CModelMIRIAMInfo.cpp.new copasi/MIRIAM/CModelMIRIAMInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CMIRIAMResource.cpp.new copasi/MIRIAM/CMIRIAMResource.cpp + touch -r copasi/MIRIAM/CMIRIAMResource.cpp copasi/MIRIAM/CMIRIAMResource.cpp.new + mv copasi/MIRIAM/CMIRIAMResource.cpp.new copasi/MIRIAM/CMIRIAMResource.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CCreator.cpp.new copasi/MIRIAM/CCreator.cpp + touch -r copasi/MIRIAM/CCreator.cpp copasi/MIRIAM/CCreator.cpp.new + mv copasi/MIRIAM/CCreator.cpp.new copasi/MIRIAM/CCreator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CConstants.cpp.new copasi/MIRIAM/CConstants.cpp + touch -r copasi/MIRIAM/CConstants.cpp copasi/MIRIAM/CConstants.cpp.new + mv copasi/MIRIAM/CConstants.cpp.new copasi/MIRIAM/CConstants.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/MIRIAM/CBiologicalDescription.cpp.new copasi/MIRIAM/CBiologicalDescription.cpp + touch -r copasi/MIRIAM/CBiologicalDescription.cpp copasi/MIRIAM/CBiologicalDescription.cpp.new + mv copasi/MIRIAM/CBiologicalDescription.cpp.new copasi/MIRIAM/CBiologicalDescription.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiUI/main.cpp.new copasi/CopasiUI/main.cpp + touch -r copasi/CopasiUI/main.cpp copasi/CopasiUI/main.cpp.new + mv copasi/CopasiUI/main.cpp.new copasi/CopasiUI/main.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiSE/CopasiSE.cpp.new copasi/CopasiSE/CopasiSE.cpp + touch -r copasi/CopasiSE/CopasiSE.cpp copasi/CopasiSE/CopasiSE.cpp.new + mv copasi/CopasiSE/CopasiSE.cpp.new copasi/CopasiSE/CopasiSE.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiSBW/SBWTranslator.cpp.new copasi/CopasiSBW/SBWTranslator.cpp + touch -r copasi/CopasiSBW/SBWTranslator.cpp copasi/CopasiSBW/SBWTranslator.cpp.new + mv copasi/CopasiSBW/SBWTranslator.cpp.new copasi/CopasiSBW/SBWTranslator.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiDataModel/CInfo.cpp.new copasi/CopasiDataModel/CInfo.cpp + touch -r copasi/CopasiDataModel/CInfo.cpp copasi/CopasiDataModel/CInfo.cpp.new + mv copasi/CopasiDataModel/CInfo.cpp.new copasi/CopasiDataModel/CInfo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/CopasiDataModel/CDataModel.cpp.new copasi/CopasiDataModel/CDataModel.cpp + touch -r copasi/CopasiDataModel/CDataModel.cpp copasi/CopasiDataModel/CDataModel.cpp.new + mv copasi/CopasiDataModel/CDataModel.cpp.new copasi/CopasiDataModel/CDataModel.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/wattstrog.cpp.new copasi/ABiochem/wattstrog.cpp + touch -r copasi/ABiochem/wattstrog.cpp copasi/ABiochem/wattstrog.cpp.new + mv copasi/ABiochem/wattstrog.cpp.new copasi/ABiochem/wattstrog.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/clo.cpp.new copasi/ABiochem/clo.cpp + touch -r copasi/ABiochem/clo.cpp copasi/ABiochem/clo.cpp.new + mv copasi/ABiochem/clo.cpp.new copasi/ABiochem/clo.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/abiochem.cpp.new copasi/ABiochem/abiochem.cpp + touch -r copasi/ABiochem/abiochem.cpp copasi/ABiochem/abiochem.cpp.new + mv copasi/ABiochem/abiochem.cpp.new copasi/ABiochem/abiochem.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/ab.cpp.new copasi/ABiochem/ab.cpp + touch -r copasi/ABiochem/ab.cpp copasi/ABiochem/ab.cpp.new + mv copasi/ABiochem/ab.cpp.new copasi/ABiochem/ab.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/Erdos.cpp.new copasi/ABiochem/Erdos.cpp + touch -r copasi/ABiochem/Erdos.cpp copasi/ABiochem/Erdos.cpp.new + mv copasi/ABiochem/Erdos.cpp.new copasi/ABiochem/Erdos.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/CGene.cpp.new copasi/ABiochem/CGene.cpp + touch -r copasi/ABiochem/CGene.cpp copasi/ABiochem/CGene.cpp.new + mv copasi/ABiochem/CGene.cpp.new copasi/ABiochem/CGene.cpp + for file in `find copasi -type f \( -name "*.cpp" \)` + iconv -f ISO-8859-1 -t UTF-8 -o copasi/ABiochem/1d.cpp.new copasi/ABiochem/1d.cpp + touch -r copasi/ABiochem/1d.cpp copasi/ABiochem/1d.cpp.new + mv copasi/ABiochem/1d.cpp.new copasi/ABiochem/1d.cpp + echo 'Patch #0 (COPASI-fix_install_libpaths.patch):' Patch #0 (COPASI-fix_install_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_install_libpaths --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 879 (offset 36 lines). patching file copasi/bindings/csharp/CMakeLists.txt Hunk #1 succeeded at 164 (offset 8 lines). Hunk #2 succeeded at 192 (offset 8 lines). patching file copasi/bindings/perl/CMakeLists.txt Hunk #1 succeeded at 158 (offset 5 lines). Hunk #2 succeeded at 175 (offset 5 lines). patching file copasi/bindings/python/CMakeLists.txt Hunk #1 succeeded at 163 (offset -2 lines). patching file copasi/bindings/java/CMakeLists.txt Hunk #1 succeeded at 159 (offset 8 lines). Hunk #2 succeeded at 192 (offset 8 lines). patching file copasi/bindings/octave/CMakeLists.txt Hunk #1 succeeded at 153 (offset 6 lines). + echo 'Patch #4 (COPASI-fix_exe_permissions.patch):' Patch #4 (COPASI-fix_exe_permissions.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_exe_permissions --fuzz=0 patching file copasi/CopasiSE/CMakeLists.txt patching file copasi/CopasiUI/CMakeLists.txt Hunk #1 succeeded at 122 (offset 13 lines). + echo 'Patch #6 (COPASI-libCombine_paths.patch):' Patch #6 (COPASI-libCombine_paths.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .libCombine_paths --fuzz=0 patching file CMakeModules/FindLIBCOMBINE.cmake Hunk #3 succeeded at 147 (offset 25 lines). + echo 'Patch #7 (COPASI-find_crossguid2.patch):' Patch #7 (COPASI-find_crossguid2.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .find_crossguid2 --fuzz=0 patching file CMakeModules/FindCROSSGUID.cmake Hunk #2 succeeded at 35 (offset 1 line). Hunk #3 succeeded at 54 (offset 2 lines). Hunk #4 succeeded at 86 (offset 3 lines). + echo 'Patch #8 (COPASI-use_c++17.patch):' Patch #8 (COPASI-use_c++17.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .use_c++17 --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 129 (offset 11 lines). + echo 'Patch #9 (COPASI-find_libsedml.patch):' Patch #9 (COPASI-find_libsedml.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .find_libsedml --fuzz=0 patching file CMakeModules/FindLIBSEDML.cmake + echo 'Patch #10 (COPASI-find_sbw.patch):' Patch #10 (COPASI-find_sbw.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .find_sbw --fuzz=0 patching file CMakeModules/FindSBW.cmake + echo 'Patch #12 (COPASI-find_raptor.patch):' Patch #12 (COPASI-find_raptor.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .find_raptor --fuzz=0 patching file CMakeModules/FindRAPTOR.cmake + echo 'Patch #13 (COPASI-qwt62.patch):' Patch #13 (COPASI-qwt62.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .qwt --fuzz=0 patching file copasi/plotUI/C2DCurveData.h patching file copasi/plotUI/C2DPlotCurve.h patching file copasi/plotUI/CBandedGraphData.h patching file copasi/plotUI/CHistoCurveData.h patching file copasi/plotUI/CLinearColorMap.h patching file copasi/plotUI/CPlotSpectogram.h patching file copasi/plotUI/CQwtPlot.cpp patching file copasi/plotUI/CQwtPlot.h patching file copasi/plotUI/CSpectorgramData.h patching file copasi/plotUI/scrollzoomer.cpp patching file copasi/plotUI/scrollzoomer.h + echo 'Patch #14 (COPASI-4.41.283-fix_missing_header.patch):' Patch #14 (COPASI-4.41.283-fix_missing_header.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file copasi/plotUI/CQMarchingSquares.cpp + echo 'Patch #15 (COPASI-find_qcp_libs.patch):' Patch #15 (COPASI-find_qcp_libs.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file CMakeModules/FindQCP.cmake Patch #16 (COPASI-fix_swig_4.2.0_compatibility.patch): + echo 'Patch #16 (COPASI-fix_swig_4.2.0_compatibility.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file copasi/bindings/common/downcast_common.cpp + echo 'Patch #11 (COPASI-porting_to_python310.patch):' Patch #11 (COPASI-porting_to_python310.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .porting_to_python310 --fuzz=0 patching file copasi/bindings/python/CMakeLists.txt Hunk #1 succeeded at 156 (offset 3 lines). + echo 'Patch #1 (COPASI-find_QWT5-QTMML-SBW.patch):' Patch #1 (COPASI-find_QWT5-QTMML-SBW.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0 patching file CMakeModules/FindQWT.cmake Hunk #1 succeeded at 19 (offset -5 lines). Hunk #2 succeeded at 30 (offset -5 lines). patching file CMakeModules/FindMML.cmake + sed -e 's|@@libdir@@|/usr/lib64|g' -i CMakeModules/FindQWT.cmake + echo 'Patch #5 (COPASI-set_QWTPLOT3D_QT5.patch):' Patch #5 (COPASI-set_QWTPLOT3D_QT5.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .QWTPLOT3D_QT5 --fuzz=0 patching file CMakeModules/FindQWTPLOT3D.cmake + sed -e 's|@@qtplot3d_includedir@@|/usr/include/qt5/qwtplot3d-qt5|g' -i CMakeModules/FindQWTPLOT3D.cmake + sed -e 's|@@qtplot3d_libdir@@|/usr/lib64|g' -i CMakeModules/FindQWTPLOT3D.cmake + sed -e 's|@@_libmml_includedir@@|/usr/include/qt5/libmml-qt5|g' -i CMakeModules/FindMML.cmake + sed -e 's|@@_libmml_libdir@@|/usr/lib64|g' -i CMakeModules/FindMML.cmake + sed -i.bak '/double sqrt(doublereal);/d' copasi/optimization/CNL2SOL.cpp + sed -i.bak '/double pow_dd(doublereal *, doublereal *);/d' copasi/optimization/CNL2SOL.cpp + sed -i.bak '/int s_copy(char *, char *, ftnlen, ftnlen);/d' copasi/optimization/CNL2SOL.cpp + sed -i.bak '/double sqrt(doublereal);/d' copasi/odepack++/dc_decsol.cpp + sed -i.bak '/double sqrt(doublereal),/d' copasi/odepack++/CRadau5.cpp + sed -i.bak '/double pow_dd(doublereal *,/d' copasi/odepack++/CRadau5.cpp + sed -i.bak '/C_FLOAT64 d_lg10(C_FLOAT64 *);/d' copasi/optimization/CPraxis.cpp + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ldmUWN + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd COPASI-Build-284 + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -lbz2' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -lbz2' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -lbz2' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCOPASI_OVERRIDE_VERSION:STRING=4.42.284 -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.12.so -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DENABLE_JIT:BOOL=OFF -DSELECT_QT=Qt5 -DSITE:STRING=fedora -DF2C_INTEGER=int -DF2C_LOGICAL=long '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG' -DCOPASI_INSTALL_C_API=OFF -DCombine_DIR:PATH=/usr/lib64/cmake '-DCMAKE_SHARED_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread' '-DCMAKE_EXE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread' -DQT_QMAKE_EXECUTABLE:FILEPATH=/usr/bin/qmake-qt5 -DQWT_VERSION_STRING:STRING=6.2.0 -DQWT_LIBRARY:FILEPATH=/usr/lib64/libqwt-qt5.so -DQWT_INCLUDE_DIR:PATH=/usr/include/qt5/qwt -DBUILD_GUI:BOOL=ON -DBUILD_COPASISBW:BOOL=ON -DENABLE_MML:BOOL=ON -DENABLE_USE_SBMLUNIT=ON -DMML_INCLUDE_DIR:PATH=/usr/include/qt5/libmml-qt5 -DMML_LIBRARY:FILEPATH=/usr/lib64/libmml.so -DENABLE_SBW_INTEGRATION=ON -DBUILD_CXX_EXAMPLES=OFF -DENABLE_COPASI_BANDED_GRAPH:BOOL=ON -DENABLE_COPASI_SEDML:BOOL=ON -DENABLE_COPASI_NONLIN_DYN_OSCILLATION:BOOL=ON -DENABLE_COPASI_EXTUNIT:BOOL=ON -DCOPASI_OVERWRITE_USE_LAPACK:BOOL=ON -DNO_BLAS_WRAP:BOOL=ON -DBLA_VENDOR=Generic -DBLAS_blas_LIBRARY:FILEPATH=/usr/lib64/libflexiblas.so -DLAPACK_lapack_LIBRARY:FILEPATH=/usr/lib64/libflexiblas.so -DCROSSGUID_INCLUDE_DIR:PATH=/usr/include/crossguid2 -DENABLE_COPASI_PARAMETERFITTING_RESIDUAL_SCALING:BOOL=ON -DENABLE_WITH_MERGEMODEL:BOOL=ON -DENABLE_USE_MATH_CONTAINER:BOOL=ON -DLIBSBML_INCLUDE_DIR:PATH=/usr/include/sbml -DLIBSBML_SHARED:BOOL=ON -DLIBSBML_LIBRARY:FILEPATH=/usr/lib64/libsbml.so -DLIBNUML_LIBRARY:FILEPATH=/usr/lib64/libnuml.so -DEXTRA_INCLUDE_DIRS:STRING=-I/usr/include/numl -DEXPAT_LIBRARY:FILEPATH=/usr/lib64/libexpat.so -DEXPAT_INCLUDE_DIR:PATH=/usr/include -DF2C_INCLUDE_DIR:PATH=/usr/include -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DENABLE_GPROF:BOOL=OFF -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DENABLE_FLEX_BISON:BOOL=ON -DBISON_EXECUTABLE:FILEPATH=/usr/bin/bison -DPREFER_STATIC:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCOPASI_USE_QCUSTOMPLOT:BOOL=ON CMake Warning: No source or binary directory provided. Both will be assumed to be the same as the current working directory, but note that this warning will become a fatal error in future CMake releases. -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for strptime -- Looking for strptime - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Check size of unsigned int -- Check size of unsigned int - done -- Check size of size_t -- Check size of size_t - done -- Performing Test EXPAT_EXPAT_TEST -- Performing Test EXPAT_EXPAT_TEST - Success -- Found EXPAT: /usr/lib64/libexpat.so (found version "2.5.0") -- Found LIBSBML: sbml -- Found LIBSEDML: /lib64/libsedml.so (found version "2.0.32") -- Found LIBCOMBINE: /usr/lib64/libCombine.so.0.2.20;z;sbml;Zipper;numl;sbml;xml2;bz2;z;m;dl;expat (found version "0.2.20") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Found BISON: /usr/bin/bison (found version "3.8.2") -- A library with BLAS API not found. Please specify library location. -- LAPACK requires BLAS -- Looking for sgemm_ -- Looking for sgemm_ - found -- A library with BLAS API found. -- Looking for cheev_ -- Looking for cheev_ - found -- Found CLAPACK: /usr/lib64/libflexiblas.so;/usr/lib64/libflexiblas.so -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Found LIBUUID: /usr/lib64/libuuid.so (found version "2.39.3") -- Found CROSSGUID: /usr/include/crossguid2 -- Found RAPTOR: /usr/lib64/libraptor.so (found version "1.4.21") -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found QCP: /usr/lib64/libqcustomplot-qt5.so -- Using Qt5 -- Found QWT: /usr/lib64/libqwt-qt5.so -- Found MML: /usr/lib64/libmml.so -- Found SBW: //usr/lib64/libSBW.so -- Found SWIG: /usr/bin/swig (found version "4.1.1") -- Mocing with options: -DWITH_TIME_SENS=1;-DWITH_QT5_VISUALIZATION=1;-DCOPASI_SBW_INTEGRATION=1;-DCOPASI_BANDED_GRAPH=1;-DCOPASI_NONLIN_DYN_OSCILLATION=1;-DQT_USE_TEXTBROWSER=1;-DCOPASI_USE_QWT=1;-DCOPASI_USE_QCUSTOMPLOT=1;-DQWT_VERSION=0x060200 -- Mocing files for subdir: barChart -- Mocing files for subdir: layoutUI -- Mocing files for subdir: MIRIAMUI -- Mocing files for subdir: plotUI -- Mocing files for subdir: tex -- Mocing files for subdir: UI -- Mocing files for subdir: wizard -- Mocing files for subdir: qlayout -- Mocing files for subdir: undoFramework -- Mocing files for subdir: undoUI -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found ZLIB: /lib64/libz.so (found version "1.3.0.zlib-ng") -- Found PythonInterp: /usr/bin/python3 (found version "3.12.1") -- Found PythonLibs: /usr/lib64/libpython3.12.so (found version "3.12.1") -- Found Python: /usr/bin/python3.12 (found version "3.12.1") found components: Interpreter -- ----------------------------------------------------------- Building COPASI 4.42.284 (Release) Source Dir = /builddir/build/BUILD/COPASI-Build-284 Binary Dir = /builddir/build/BUILD/COPASI-Build-284 Install Prefix = /usr Dependencies: Vendor = Generic LAPACK Libs = /usr/lib64/libflexiblas.so;/usr/lib64/libflexiblas.so LAPACK LDFLAGS = crossguid Libs = /lib64/libcrossguid2.so;/usr/lib64/libuuid.so cross include = /usr/include/crossguid2 Expat version = 2.5.0 Expat Libs = /usr/lib64/libexpat.so Expat include = /usr/include Raptor version = 1.4.21 Raptor Libs = /usr/lib64/libraptor.so Raptor include = /usr/include libSBML version = libSBML lib = /usr/lib64/libsbml.so libSBML include = /usr/include/sbml Qt version = 5.15.12 Qt lib = Qt5::Concurrent;Qt5::Core;Qt5::Gui;Qt5::Widgets;Qt5::Network;Qt5::OpenGL;Qt5::PrintSupport;Qt5::Svg;Qt5::Xml;Qt5::DataVisualization Qt include = /usr/include/qt5/;/usr/include/qt5/QtConcurrent;/usr/include/qt5/QtCore;/usr/lib64/qt5//mkspecs/linux-g++;/usr/include/qt5/QtGui;/usr/include/qt5/QtWidgets;/usr/include/qt5/QtNetwork;/usr/include/qt5/QtOpenGL;/usr/include/qt5/QtPrintSupport;/usr/include/qt5/QtSvg;/usr/include/qt5/QtXml;/usr/include/qt5/QtDataVisualization QWT version = 6.2.0 (0x60200) QWT lib = /usr/lib64/libqwt-qt5.so QWT include = /usr/include/qt5/qwt qwtplot3d lib = qwtplot3d include = qtmml lib = /usr/lib64/libmml.so qtmml include = /usr/include/qt5/libmml-qt5 SBW version = SBW lib = //usr/lib64/libSBW.so SBW include = /usr/include libSEDML version = 2.0.32 libSEDML lib = /lib64/libsedml.so libSEDML include = /usr/include Combine version = 0.2.20 Combine lib = /usr/lib64/libCombine.so.0.2.20;z;sbml;Zipper;numl;sbml;xml2;bz2;z;m;dl;expat Combine include = /usr/include NativeJIT lib = NativeJIT include = NativeJIT CXX Flags = cpu_features lib = cpu_features include = OpenMP Libs = OpenMP CXX Flags = Options: COPASI_EXTUNIT = ON SBW integration = ON Model Merging = ON SEDML support = ON Combine Archive support = ON SDE support = ON GPROF support = OFF UNDO framework = ON Versioning framework = OFF Provenance framework = OFF Analytics Task = OFF Time Sensitivities task = ON JIT Compilation = OFF OpenMP = OFF CXX Flags = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC Additional Defines = Linux;HAVE_F2C_H;LINUX Language Bindings: SWIG = /usr/bin/swig .NET Bindings = OFF Java Bindings = OFF Python Bindings = ON Perl Bindings = OFF Octave Bindings = OFF R Bindings = OFF Building: COPASI SE = ON COPASI UI = ON C++ Examples = OFF SBML TestRunner = OFF Franks TestRunner = OFF Semantic Testsuite = OFF Stochastic Testsuite = OFF Steady State TestRunner = OFF MCA TestRunner = OFF ----------------------------------------------------------- -- Configuring done (6.7s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP COPASI_OVERWRITE_USE_LAPACK CSHARP_COMPILER ENABLE_COPASI_SEDML ENABLE_USE_MATH_CONTAINER ENABLE_USE_SBMLUNIT ENABLE_WITH_MERGEMODEL QT_QMAKE_EXECUTABLE SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/COPASI-Build-284 + /usr/bin/cmake --build . -j2 --verbose Change Dir: '/builddir/build/BUILD/COPASI-Build-284' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2 /usr/bin/cmake -S/builddir/build/BUILD/COPASI-Build-284 -B/builddir/build/BUILD/COPASI-Build-284 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-Build-284/CMakeFiles /builddir/build/BUILD/COPASI-Build-284//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/gmake -f copasi/CMakeFiles/libCOPASISE-core.dir/build.make copasi/CMakeFiles/libCOPASISE-core.dir/depend /usr/bin/gmake -f copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_swig.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' cd /builddir/build/BUILD/COPASI-Build-284 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' cd /builddir/build/BUILD/COPASI-Build-284 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi /builddir/build/BUILD/COPASI-Build-284/copasi/CMakeFiles/libCOPASISE-core.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/gmake -f copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/gmake -f copasi/CMakeFiles/libCOPASISE-core.dir/build.make copasi/CMakeFiles/libCOPASISE-core.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' gmake[2]: Nothing to be done for 'copasi/bindings/python/CMakeFiles/binding_python_swig.dir/build'. gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' [ 0%] Built target binding_python_swig gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CDataModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/CopasiDataModel/CInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CInfo.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CBiologicalDescription.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CBiologicalDescription.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:50: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp: In member function ‘bool CDataModel::openCombineArchive(const std::string&, CProcessReport*, const bool&, const SedmlImportOptions*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:2222:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2222 | while (numMessagesBefore < CCopasiMessage::size()) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:2249:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2249 | while (numMessagesBefore < CCopasiMessage::size()) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:2266:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2266 | while (numMessagesBefore < CCopasiMessage::size()) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:2071:8: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2071 | bool result = true; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp: In member function ‘bool CDataModel::importSEDML(const std::string&, CProcessReport*, const bool&, const SedmlImportOptions*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:2395:17: warning: unused variable ‘pSEDMLDocument’ [-Wunused-variable] 2395 | SedDocument * pSEDMLDocument = NULL; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:2399:18: warning: unused variable ‘pSBMLDocument’ [-Wunused-variable] 2399 | SBMLDocument * pSBMLDocument = NULL; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:2400:20: warning: unused variable ‘pLol’ [-Wunused-variable] 2400 | CListOfLayouts * pLol = NULL; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:2401:29: warning: unused variable ‘pLotList’ [-Wunused-variable] 2401 | COutputDefinitionVector * pLotList = NULL; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp: In member function ‘bool CDataModel::exportSEDML(const std::string&, bool, int, int, bool, bool, CProcessReport*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.cpp:2593:17: warning: unused variable ‘pOrigSEDMLDocument’ [-Wunused-variable] 2593 | SedDocument * pOrigSEDMLDocument = NULL; | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CBiologicalDescription.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CBiologicalDescription.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CConstants.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CConstants.cpp [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CCreator.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CMIRIAMResource.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.h: In constructor ‘CMIRIAMResource::CMIRIAMResource(const std::string&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.h:220:27: warning: ‘CMIRIAMResource::mpDeprecated’ will be initialized after [-Wreorder] 220 | CCopasiParameterGroup * mpDeprecated; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.h:215:10: warning: ‘bool* CMIRIAMResource::mpNamespaceEmbeddedInPattern’ [-Wreorder] 215 | bool * mpNamespaceEmbeddedInPattern; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.cpp:434:1: warning: when initialized here [-Wreorder] 434 | CMIRIAMResource::CMIRIAMResource(const std::string & name, | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.h: In constructor ‘CMIRIAMResource::CMIRIAMResource(const CMIRIAMResource&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.h:220:27: warning: ‘CMIRIAMResource::mpDeprecated’ will be initialized after [-Wreorder] 220 | CCopasiParameterGroup * mpDeprecated; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.h:215:10: warning: ‘bool* CMIRIAMResource::mpNamespaceEmbeddedInPattern’ [-Wreorder] 215 | bool * mpNamespaceEmbeddedInPattern; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.cpp:446:1: warning: when initialized here [-Wreorder] 446 | CMIRIAMResource::CMIRIAMResource(const CMIRIAMResource & src, | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.h: In constructor ‘CMIRIAMResource::CMIRIAMResource(const CCopasiParameterGroup&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.h:220:27: warning: ‘CMIRIAMResource::mpDeprecated’ will be initialized after [-Wreorder] 220 | CCopasiParameterGroup * mpDeprecated; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.h:215:10: warning: ‘bool* CMIRIAMResource::mpNamespaceEmbeddedInPattern’ [-Wreorder] 215 | bool * mpNamespaceEmbeddedInPattern; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CMIRIAMResource.cpp:458:1: warning: when initialized here [-Wreorder] 458 | CMIRIAMResource::CMIRIAMResource(const CCopasiParameterGroup & group, | ^~~~~~~~~~~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModelMIRIAMInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CModified.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModified.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModified.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModified.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModified.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraph.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFGraph.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObjectReference.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFGraph.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFGraphConverter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFGraphConverter.cpp [ 0%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFLiteral.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFLiteral.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFNode.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFObject.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFParser.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFPredicate.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFPredicate.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFSubject.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFSubject.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFTriplet.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFTriplet.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFUtilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFUtilities.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRDFWriter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFWriter.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFWriter.cpp: In member function ‘char* CRDFWriter::write(const CRDFGraph*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRDFWriter.cpp:99:8: warning: variable ‘success’ set but not used [-Wunused-but-set-variable] 99 | bool success = true; | ^~~~~~~ [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CRaptorInit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CRaptorInit.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/MIRIAM/CReference.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CReference.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CArray.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CReference.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CReference.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CArrayElementReference.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CArrayElementReference.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CArrayElementReference.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CArrayElementReference.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArrayElementReference.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CCommonName.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CCommonName.cpp [ 1%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CCore.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CCore.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CCore.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CCore.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CCore.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataArray.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataContainer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObjectMap.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataObjectMap.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataObjectMap.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataObjectMap.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObjectMap.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObjectMap.cpp: In member function ‘void CDataObjectMap::objectRenamed(CDataObject*, const std::string&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObjectMap.cpp:301:16: warning: unused variable ‘success’ [-Wunused-variable] 301 | bool success = (itMap->second.erase(pObject) > 0); | ^~~~~~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataString.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataString.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CDataTimer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataTimer.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CObjectInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CObjectInterface.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CRegisteredCommonName.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRegisteredCommonName.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CObjectInterface.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CObjectInterface.cpp:15: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/core/CRootContainer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.cpp:13: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.cpp:8: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.h: In constructor ‘CRootContainer::CRootContainer(const bool&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.h:75:23: warning: ‘CRootContainer::mpUnitDefinitionList’ will be initialized after [-Wreorder] 75 | CUnitDefinitionDB * mpUnitDefinitionList; | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.h:73:23: warning: ‘CConfigurationFile* CRootContainer::mpConfiguration’ [-Wreorder] 73 | CConfigurationFile* mpConfiguration; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.cpp:38:1: warning: when initialized here [-Wreorder] 38 | CRootContainer::CRootContainer(const bool & withGUI): | ^~~~~~~~~~~~~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/commandline/CConfigurationFile.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.h: In constructor ‘CConfigurationFile::CConfigurationFile(const std::string&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.h:577:10: warning: ‘CConfigurationFile::mpValidateUnits’ will be initialized after [-Wreorder] 577 | bool * mpValidateUnits; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.h:566:27: warning: ‘CCopasiParameterGroup* CConfigurationFile::mpDisplayIssueSeverity’ [-Wreorder] 566 | CCopasiParameterGroup * mpDisplayIssueSeverity; | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.cpp:114:1: warning: when initialized here [-Wreorder] 114 | CConfigurationFile::CConfigurationFile(const std::string & name, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.h: In constructor ‘CConfigurationFile::CConfigurationFile(const CConfigurationFile&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.h:577:10: warning: ‘CConfigurationFile::mpValidateUnits’ will be initialized after [-Wreorder] 577 | bool * mpValidateUnits; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.h:566:27: warning: ‘CCopasiParameterGroup* CConfigurationFile::mpDisplayIssueSeverity’ [-Wreorder] 566 | CCopasiParameterGroup * mpDisplayIssueSeverity; | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CConfigurationFile.cpp:148:1: warning: when initialized here [-Wreorder] 148 | CConfigurationFile::CConfigurationFile(const CConfigurationFile & src, | ^~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/commandline/CLocaleString.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/CLocaleString.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/commandline/COptionParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptionParser.cpp [ 2%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/commandline/COptions.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptions.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CEvaluationNodeNormalizer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CEvaluationNodeNormalizer.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalBase.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CEvaluationNodeNormalizer.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CEvaluationNodeNormalizer.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalCall.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalCall.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoice.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalChoice.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalChoiceLogical.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalChoiceLogical.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFraction.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalFraction.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalFunction.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalGeneralPower.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalGeneralPower.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalItem.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalItemPower.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalItemPower.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalItem.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLcm.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLcm.cpp [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogical.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySetOfSets(const TemplateSetOfSets&, TemplateSetOfSets&) [with TYPE = CNormalChoiceLogical]’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.cpp:39:16: required from here 39 | copySetOfSets(src.mChoices, this->mChoices); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:530:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 530 | bool tmpRes = target.insert(std::make_pair(tmpSet, it->second)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySetOfSets(const TemplateSetOfSets&, TemplateSetOfSets&) [with TYPE = CNormalLogicalItem]’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.cpp:41:16: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:530:14: warning: 41 | copySetOfSets(src.mAndSets, this->mAndSets); /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:530:14: warning: | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:530:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 530 | bool tmpRes = target.insert(std::make_pair(tmpSet, it->second)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySet(const TemplateSet&, TemplateSet&) [with TYPE = CNormalChoiceLogical]’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.cpp:216:18: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:530:14: warning: 216 | copySet((*it).first, tmpSet); /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:530:14: warning: | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 262 | bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySet(const TemplateSet&, TemplateSet&) [with TYPE = CNormalLogicalItem]’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.cpp:494:22: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:262:14: warning: 494 | copySet((*it2).first, tmpSet); /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:262:14: warning: | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 262 | bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; | ^~~~~~ [ 3%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalLogicalItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogicalItem.cpp [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalProduct.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalProduct.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalProduct.cpp: In copy constructor ‘CNormalProduct::CNormalProduct(const CNormalProduct&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalProduct.cpp:73:12: warning: unused variable ‘result’ [-Wunused-variable] 73 | bool result = this->mItemPowers.insert(pDestItemPower).second; | ^~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalSum.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalSum.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalSum.cpp: In copy constructor ‘CNormalSum::CNormalSum(const CNormalSum&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalSum.cpp:93:12: warning: unused variable ‘tmpRes’ [-Wunused-variable] 93 | bool tmpRes = mProducts.insert(new CNormalProduct(*pTmpProduct)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalSum.cpp:102:12: warning: unused variable ‘tmpRes’ [-Wunused-variable] 102 | bool tmpRes = mFractions.insert(new CNormalFraction(**it2)).second; | ^~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/CNormalTranslation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalTranslation.cpp [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/ConvertToCEvaluationNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/ConvertToCEvaluationNode.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalTranslation.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalTranslation.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalTranslation.cpp: In static member function ‘static CNormalFraction* CNormalTranslation::normAndSimplifyReptdly(const CEvaluationNode*, unsigned int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalTranslation.cpp:175:20: warning: unused variable ‘pFraction’ [-Wunused-variable] 175 | CNormalFraction* pFraction = dynamic_cast(base0); | ^~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalTranslation.cpp: In static member function ‘static CEvaluationNode* CNormalTranslation::newCancel(const CEvaluationNode*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalTranslation.cpp:4076:34: warning: unused variable ‘pChild2’ [-Wunused-variable] 4076 | const CEvaluationNode* pChild2 = dynamic_cast(pChild1->getSibling()); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:59: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySet(const TemplateSet&, TemplateSet&) [with TYPE = CNormalChoiceLogical]’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:2637:44: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 2637 | CNormalLogical::copySet((*it).first, tmpSet); /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 262 | bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h: In instantiation of ‘static void CNormalLogical::copySet(const TemplateSet&, TemplateSet&) [with TYPE = CNormalLogicalItem]’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/ConvertToCEvaluationNode.cpp:2647:44: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:262:14: warning: 2647 | CNormalLogical::copySet((*it2).first, tmpSet); /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:262:14: warning: | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalLogical.h:262:14: warning: unused variable ‘tmpRes’ [-Wunused-variable] 262 | bool tmpRes = target.insert(std::make_pair(new TYPE(*it->first), it->second)).second; | ^~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/compareExpressions/compare_utilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalTranslation.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:47: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:49: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:27: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:50: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:60: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp: In function ‘bool contains_necessary_mass_action_elements(const CDataVector&, const CNormalProduct*, const CModel*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:1226:25: warning: unused variable ‘pDatamodel’ [-Wunused-variable] 1226 | const CDataModel* pDatamodel = dynamic_cast(pModel->getObjectParent()); | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp: In function ‘normalize_variable_names(CNormalBase*, std::map, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > >&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:266:54: warning: ‘this’ pointer is null [-Wnonnull] 266 | normalize_variable_names(&pChoice->getCondition(), variableMap); | ~~~~~~~~~~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalChoice.h:46:21: note: in a call to non-static member function ‘CNormalChoice::getCondition()’ 46 | CNormalLogical& getCondition(); | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:267:59: warning: ‘this’ pointer is null [-Wnonnull] 267 | normalize_variable_names(&pChoice->getTrueExpression(), variableMap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalChoice.h:49:22: note: in a call to non-static member function ‘CNormalChoice::getTrueExpression()’ 49 | CNormalFraction& getTrueExpression(); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/compare_utilities.cpp:268:60: warning: ‘this’ pointer is null [-Wnonnull] 268 | normalize_variable_names(&pChoice->getFalseExpression(), variableMap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/COPASI-Build-284/copasi/compareExpressions/CNormalChoice.h:52:22: note: in a call to non-static member function ‘CNormalChoice::getFalseExpression()’ 52 | CNormalFraction& getFalseExpression(); | ^~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionMethod.cpp [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionProblem.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionProblem.cpp: In function ‘std::ostream& operator<<(std::ostream&, const CCrossSectionProblem&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionProblem.cpp:95:21: warning: unused variable ‘pDataModel’ [-Wunused-variable] 95 | const CDataModel* pDataModel = o.getObjectDataModel(); | ^~~~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/crosssection/CCrossSectionTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionTask.cpp [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionTask.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionTask.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionTask.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionTask.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionTask.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternMethod.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMMethod.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternMethod.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternMethod.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternMethod.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternMethod.h:17: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTree.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternTree.cpp [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CBitPatternTreeNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternTreeNode.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMMethod.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternTreeMethod.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternTreeMethod.h:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMAlgorithm.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMAlgorithm.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMAlgorithm.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMMethod.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMAlgorithm.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMAlgorithm.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMAlgorithm.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMAlgorithm.h:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 4%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMMethod.cpp [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMMethod.cpp:47: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMTask.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMMethod.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMMethod.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMAlgorithm.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMMethod.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CEFMTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMTask.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.cpp: In member function ‘virtual void CEFMProblem::printResult(std::ostream*) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.cpp:218:62: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 218 | pTask->getSpeciesChanges(*itMode, **itSpecies); | ^ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMTask.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMTask.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMTask.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMTask.cpp:47: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMTask.cpp: In member function ‘std::pair CEFMTask::getSpeciesChanges(const CFluxMode&, const CMetab&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMTask.cpp:212:27: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 212 | const CMetab & metab) const | ^~~~~ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxMode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CFluxMode.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CFluxMode.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CFluxScore.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CFluxScore.cpp [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrix.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CStepMatrix.cpp [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CStepMatrixColumn.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CStepMatrixColumn.cpp [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauLine.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CTableauLine.cpp [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CTableauMatrix.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CTableauMatrix.cpp [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/elementaryFluxModes/CZeroSet.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CZeroSet.cpp [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationParser_yacc.cpp [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationLexer_lex.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationLexer_lex.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from CEvaluationParser.ypp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /raid/shoops/git/COPASI/copasi/function/CEvaluationLexer.lpp:13: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CCallParameters.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.cpp: In member function ‘CIssue CFunctionParameterMap::setCallParameter(std::string, const CDataObject*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.cpp:171:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 171 | switch (pFunctionParameter->getUsage()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.cpp: In member function ‘CIssue CFunctionParameterMap::addCallParameter(std::string, const CDataObject*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.cpp:217:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 217 | switch (pFunctionParameter->getUsage()) | ^ [ 5%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CDerive.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CDerive.cpp [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CDerive.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CDerive.cpp: In member function ‘CEvaluationNode* CDerive::deriveBranch(const CEvaluationNode*, const CDataObject*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CDerive.cpp:508:25: warning: unused variable ‘tmpFunction’ [-Wunused-variable] 508 | const CFunction * tmpFunction = dynamic_cast(pENCall->getCalledTree()); | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.cpp: In member function ‘bool CEvaluationNode::operator<(const CEvaluationNode&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.cpp:861:10: warning: enumeration value ‘UNIT’ not handled in switch [-Wswitch] 861 | switch (mainType()) | ^ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeCall.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeChoice.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeChoice.cpp [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeConstant.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeChoice.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeChoice.cpp:276: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp: In member function ‘virtual ASTNode* CEvaluationNodeConstant::toAST(const CDataModel*) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 238 | switch (subType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:238:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeConstant.cpp:271: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeDelay.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeDelay.cpp [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeDelay.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeDelay.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeDelay.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp: In member function ‘virtual ASTNode* CEvaluationNodeFunction::toAST(const CDataModel*) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 1079 | switch (subType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1079:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp: In member function ‘virtual std::string CEvaluationNodeFunction::getMMLString(const std::vector >&, bool, const std::vector > >&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 1507 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.cpp:1507:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeLogical.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp: In constructor ‘CEvaluationNodeLogical::CEvaluationNodeLogical(const CEvaluationNode::SubType&, const CCopasiNode >::Data&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 53 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:53:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp: In member function ‘virtual CIssue CEvaluationNodeLogical::compile()’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 123 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:123:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp: In member function ‘virtual CValidatedUnit CEvaluationNodeLogical::getUnit(const CMathContainer&, const std::vector&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 422 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:422:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp: In member function ‘virtual CValidatedUnit CEvaluationNodeLogical::setUnit(const CMathContainer&, const std::map&, std::map&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 458 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:458:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp: In static member function ‘static CEvaluationNode* CEvaluationNodeLogical::fromAST(const ASTNode*, const std::vector&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 553 | switch (subType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:553:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:492:10: warning: unused variable ‘i’ [-Wunused-variable] 492 | size_t i = 0; | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeLogical.cpp:668: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeNumber.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp: In constructor ‘CEvaluationNodeNumber::CEvaluationNodeNumber(const CEvaluationNode::SubType&, const CCopasiNode >::Data&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 51 | switch (subType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:51:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp: In member function ‘virtual ASTNode* CEvaluationNodeNumber::toAST(const CDataModel*) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 240 | switch (subType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:240:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeNumber.cpp:275: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeOperator.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp: In constructor ‘CEvaluationNodeObject::CEvaluationNodeObject(const CEvaluationNode::SubType&, const CCopasiNode >::Data&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 61 | switch (subType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:61:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp: In member function ‘virtual CIssue CEvaluationNodeObject::compile()’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 130 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:130:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp: In member function ‘virtual const CCopasiNode >::Data& CEvaluationNodeObject::getData() const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 332 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:332:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp: In member function ‘virtual std::string CEvaluationNodeObject::getInfix(const std::vector >&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 358 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:358:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp: In member function ‘void CEvaluationNodeObject::setObjectValuePtr(double*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 554 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeObject.cpp:554:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp: In static member function ‘static CEvaluationNode* CEvaluationNodeOperator::fromAST(const ASTNode*, const std::vector&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:390:10: warning: unused variable ‘i’ [-Wunused-variable] 390 | size_t i = 0, iMax = children.size(); | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp: In member function ‘virtual ASTNode* CEvaluationNodeOperator::toAST(const CDataModel*) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 508 | switch (subType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:508:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1503: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp: In member function ‘virtual std::string CEvaluationNodeOperator::getMMLString(const std::vector >&, bool, const std::vector > >&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 1515 | switch (mSubType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeOperator.cpp:1515:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeStructure.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp: In constructor ‘CEvaluationNodeStructure::CEvaluationNodeStructure(const CEvaluationNode::SubType&, const CCopasiNode >::Data&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 40 | switch (subType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeStructure.cpp:40:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeUnit.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeUnit.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVariable.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeVariable.cpp [ 6%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeVector.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeVariable.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeVector.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeVariable.cpp:118: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationNodeWhiteSpace.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeWhiteSpace.cpp [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CEvaluationTree.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeWhiteSpace.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/copasi.h:55, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CExpression.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp: In member function ‘bool CEvaluationTree::setTree(const ASTNode&, bool)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:635:24: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 635 | switch (TargetType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:619:20: warning: unused variable ‘pErrorNode’ [-Wunused-variable] 619 | CEvaluationNode *pErrorNode = NULL; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp: In static member function ‘static CEvaluationNode* CEvaluationTree::fromAST(const ASTNode*, bool)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_END_OF_CORE’ not handled in switch [-Wswitch] 684 | switch (itNode->getType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_FUNCTION_MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_FUNCTION_MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_FUNCTION_QUOTIENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_FUNCTION_RATE_OF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_FUNCTION_REM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LOGICAL_IMPLIES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CSYMBOL_FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_NORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_UNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_BERNOULLI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_BINOMIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_CAUCHY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_CHISQUARE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_EXPONENTIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_GAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_LAPLACE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_LOGNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_POISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_DISTRIB_FUNCTION_RAYLEIGH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_SELECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_MATRIX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_MATRIXROW’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_DETERMINANT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_TRANSPOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_VECTOR_PRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_SCALAR_PRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LINEAR_ALGEBRA_OUTER_PRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LOGICAL_EXISTS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_LOGICAL_FORALL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MEAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MEDIAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MODE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MOMENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_SDEV’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_VARIANCE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_STATISTICS_MOMENTABOUT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SERIES_PRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SERIES_SUM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SERIES_LIMIT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SERIES_TENDSTO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_GCD’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_CONJUGATE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_ARG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_REAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_IMAGINARY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_ALGEBRA_LCM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_RELATIONS_EQUIVALENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_RELATIONS_APPROX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_RELATIONS_FACTOROF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_INT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_DIFF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_PARTIALDIFF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_LOWLIMIT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_UPLIMIT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_DIVERGENCE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_GRAD’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_CURL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CALCULUS_LAPLACIAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_SET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_LIST’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_UNION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_INTERSECT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_IN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_NOTIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_SUBSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_PRSUBSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_NOTSUBSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_NOTPRSUBSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_SETDIFF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_CARD’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_SET_THEORY_CARTESIANPRODUCT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANT_IMAGINARYI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_INTEGERS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_REALS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_RATIONALS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_NATURALNUMBERS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_COMPLEXES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_PRIMES’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_EMPTYSET’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_CONSTANTS_EULERGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_INTERVAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_INVERSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_CONDITION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_DECLARE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_COMPOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_IDENT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_DOMAIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_CODOMAIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_IMAGE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.cpp:684:18: warning: enumeration value ‘AST_BASIC_CONTENT_DOMAINOFAPPLICATION’ not handled in switch [-Wswitch] In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.cpp: In member function ‘void CExpression::initObjects()’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.cpp:61:22: warning: unused variable ‘pObject’ [-Wunused-variable] 61 | CObjectInterface * pObject = | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.cpp:227: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.cpp [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionAnalyzer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionAnalyzer.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionAnalyzer.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionAnalyzer.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionAnalyzer.cpp: In static member function ‘static void CFunctionAnalyzer::constructCallParameters(const CFunctionParameters&, std::vector&, bool)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionAnalyzer.cpp:1197:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 1197 | switch (role) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionAnalyzer.cpp: In static member function ‘static void CFunctionAnalyzer::constructCallParametersActualValues(std::vector&, const CReaction*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionAnalyzer.cpp:1229:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 1229 | switch (role) | ^ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionDB.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.cpp [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CFunctionParameters.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.cpp [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CKinFunction.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CKinFunction.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.cpp: In member function ‘size_t CFunctionParameters::findParameterByName(const std::string&, const CFunctionParameter**) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.cpp:199:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 199 | if (ppFunctionParameter != NULL) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.cpp:195:10: warning: unused variable ‘imax’ [-Wunused-variable] 195 | size_t imax = mParameters.size(); | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CKinFunction.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CKinFunction.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CMassAction.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CMassAction.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CMassAction.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CMassAction.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/copasimathml.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CMassAction.cpp:151: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/function/CNodeK.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/function/CNodeK.cpp [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CAbstractLayoutInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CAbstractLayoutInterface.cpp [ 7%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CCopasiSpringLayout.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CCopasiSpringLayout.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CNodeK.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CNodeK.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CCopasiSpringLayout.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CCopasiSpringLayout.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CCopasiSpringLayout.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CCopasiSpringLayout.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLBase.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CCopasiSpringLayout.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLColorDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLColorDefinition.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLCurve.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLDefaultStyles.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLDefaultStyles.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLEllipse.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLEllipse.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLDefaultStyles.h:17, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLDefaultStyles.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLEllipse.h:16, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLEllipse.cpp:17: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlobalStyle.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalStyle.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.cpp:175: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.cpp:176: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalStyle.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalStyle.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGlyphs.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGradientBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGradientBase.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStop.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGradientStop.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGradientStops.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGradientStops.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.cpp [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.h:49, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 8%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGroup.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.cpp [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive2D.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive2D.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.cpp: In member function ‘RenderGroup* CLGroup::toSBML(unsigned int, unsigned int) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.cpp:884:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 884 | int result; | ^~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLImage.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLImage.cpp [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLImageTexturizer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLImageTexturizer.cpp [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLayoutRenderer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLayoutRenderer.cpp [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLineEnding.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/utility_classes.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLayoutRenderer.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLayoutRenderer.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLayoutRenderer.cpp:63: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:15: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLayoutRenderer.cpp:67: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLayoutRenderer.cpp: In static member function ‘static std::pair CLLayoutRenderer::calculate_intersection_point_2d(double, double, double, double, double, double, double, double)’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLayoutRenderer.cpp:4500:167: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 4500 | std::pair CLLayoutRenderer::calculate_intersection_point_2d(double p1x, double p1y, double sx, double sy, double p2x, double p2y, double tx, double ty) | ^ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLinearGradient.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLinearGradient.cpp [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLocalRenderInformation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* CLLocalRenderInformation::toSBML(unsigned int, unsigned int) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.cpp:201:11: warning: unused variable ‘result’ [-Wunused-variable] 201 | int result = pLRI->addStyle(pStyle); | ^~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLLocalStyle.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalStyle.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalStyle.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalStyle.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLPolygon.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLPolygon.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLPolygon.h:16, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLPolygon.cpp:17: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRadialGradient.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRadialGradient.cpp [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLReactionGlyph.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.cpp [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRectangle.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRectangle.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRectangle.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRectangle.cpp:14: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRelAbsVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRelAbsVector.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCubicBezier.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderCubicBezier.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderCurve.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderFlattener.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderFlattener.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderFlattener.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderFlattener.cpp:11: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderCurve.h:17, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderCurve.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderInformationBase.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.cpp: In member function ‘void CLRenderInformationBase::addSBMLAttributes(RenderInformationBase*) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.cpp:439:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 439 | int result; | ^~~~~~ [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderPoint.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderPoint.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLRenderResolver.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderResolver.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLStyle.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLStyle.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderResolver.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderResolver.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderResolver.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderResolver.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderResolver.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLStyle.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLText.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLText.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLText.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLText.cpp:15: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLTransformation2D.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLUnresolvedReferenceException.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLUnresolvedReferenceException.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLayout.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.cpp [ 10%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutEngine.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayoutEngine.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.h:49, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutInitializer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayoutInitializer.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayoutInitializer.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayoutInitializer.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CLayoutState.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayoutState.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayoutState.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/CListOfLayouts.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/SBMLDocumentLoader.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/SBMLDocumentLoader.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalStyle.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/SBMLDocumentLoader.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/SBMLDocumentLoader.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/SBMLDocumentLoader.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/SBMLDocumentLoader.h:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/SBMLDocumentLoader.cpp: In static member function ‘static CLayout* SBMLDocumentLoader::createLayout(const Layout&, const std::map, std::__cxx11::basic_string >&, std::map, std::__cxx11::basic_string >&, const std::map, std::__cxx11::basic_string >&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/SBMLDocumentLoader.cpp:272:10: warning: unused variable ‘count’ [-Wunused-variable] 272 | size_t count = idToKeyMap.size() + globalIdToKeyMap.size(); | ^~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/layout/utility_classes.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layout/utility_classes.cpp [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lna/CLNAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/utility_classes.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/utility_classes.cpp:14: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/utility_classes.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/utility_classes.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/utility_classes.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.cpp: In member function ‘int CLNAMethod::calculateCovarianceMatrixReduced()’: /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.cpp:303:21: warning: unused variable ‘pJacobian’ [-Wunused-variable] 303 | const C_FLOAT64 * pJacobian = mJacobianReduced.array(); | ^~~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lna/CLNAProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAProblem.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAProblem.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAProblem.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNATask.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAProblem.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lna/CLNATask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNATask.cpp [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNATask.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNATask.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNATask.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNATask.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNATask.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapTask.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapProblem.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapProblem.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapProblem.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapProblem.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapTask.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapTask.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/lyap/CLyapWolfMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapTask.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:151: /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitCompiler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitCompiler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CJitCompiler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CJitCompiler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CJitCompiler.cpp [ 11%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitCompilerImplementation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitCompilerImplementation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CJitCompilerImplementation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CJitCompilerImplementation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CJitCompilerImplementation.cpp [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitExpression.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CJitExpression.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CJitExpression.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CJitExpression.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CJitExpression.cpp [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathContainer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CJitCompilerImplementation.cpp:9: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDelay.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDelay.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp: In constructor ‘CMathContainer::CMathContainer()’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:315:9: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct CMathContainer::sSize’; use assignment or value-initialization instead [-Wclass-memaccess] 315 | memset(&mSize, 0, sizeof(mSize)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:58:10: note: ‘struct CMathContainer::sSize’ declared here 58 | struct sSize | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp: In constructor ‘CMathContainer::CMathContainer(CModel&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:417:9: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct CMathContainer::sSize’; use assignment or value-initialization instead [-Wclass-memaccess] 417 | memset(&mSize, 0, sizeof(mSize)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:58:10: note: ‘struct CMathContainer::sSize’ declared here 58 | struct sSize | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp: In member function ‘void CMathContainer::createSynchronizeInitialValuesSequence()’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:2581:20: warning: enumeration value ‘Undefined’ not handled in switch [-Wswitch] 2581 | switch (pObject->getSimulationType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp: In member function ‘void CMathContainer::createApplyInitialValuesSequence()’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:2720:20: warning: enumeration value ‘Undefined’ not handled in switch [-Wswitch] 2720 | switch (pObject->getSimulationType()) | ^ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDelay.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDelay.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDelay.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDelay.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyGraph.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp: In member function ‘std::string CMathDependencyGraph::getDOTNodeId(const CObjectInterface*) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp:651:14: warning: enumeration value ‘Noise’ not handled in switch [-Wswitch] 651 | switch (pMathObject->getValueType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp:651:14: warning: enumeration value ‘ParticleNoise’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp:651:14: warning: enumeration value ‘DelayValue’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp:651:14: warning: enumeration value ‘DelayLag’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp:651:14: warning: enumeration value ‘TransitionTime’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyGraph.cpp:651:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyNode.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyNode.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyNode.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyNode.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyNode.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDependencyNodeIterator.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDependencyNodeIterator.cpp [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDerive.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathDerive.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathDerive.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathDerive.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDerive.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDerive.cpp:11: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDerive.cpp: In member function ‘void CMathDerive::initOneVar(size_t, size_t)’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathDerive.cpp:41:16: warning: unused variable ‘pVMO’ [-Wunused-variable] 41 | CMathObject* pVMO = mpContainer->getMathObject(&mpContainer->getValues()[var]); | ^~~~ [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathEnum.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEnum.cpp [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathEvent.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathEventQueue.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp: In static member function ‘static CEvaluationNode* CMathEvent::CTrigger::compileLE(const CEvaluationNode*, const std::vector&, const CMath::Variables&, CRootProcessor*&, CMathContainer&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 979 | switch (pTriggerNode->subType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘POINTER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘RUNIFORM’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘RNORMAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘RGAMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘RPOISSON’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.cpp:979:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.h: In copy constructor ‘CMathEventQueue::CAction::CAction(const CMathEventQueue::CAction&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.h:190:23: warning: ‘CMathEventQueue::CAction::mpPriority’ will be initialized after [-Wreorder] 190 | const C_FLOAT64 * mpPriority; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.h:185:26: warning: ‘CVector CMathEventQueue::CAction::mValues’ [-Wreorder] 185 | CVector< C_FLOAT64 > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.cpp:85:1: warning: when initialized here [-Wreorder] 85 | CMathEventQueue::CAction::CAction(const CAction & src): | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.cpp: In constructor ‘CMathEventQueue::CAction::CAction(CMathEvent*, CMathEventQueue*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEventQueue.cpp:103:10: warning: enumeration value ‘Stop’ not handled in switch [-Wswitch] 103 | switch (pEvent->getType()) | ^ [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathExpression.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_construct.h:61, from /usr/include/c++/14/bits/stl_tempbuf.h:61, from /usr/include/c++/14/memory:66, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:18: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp: In member function ‘virtual CIssue CMathExpression::compile()’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘DEFAULT’ not handled in switch [-Wswitch] 285 | switch ((*it)->subType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘DELAY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘IF’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘VECTOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘DOUBLE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘FUNCTION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘LOG’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘OPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘PI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘POWER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘EXPRESSION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘EXPONENTIALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘INTEGER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘LOG10’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MULTIPLY’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘OR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘VECTOROPEN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COMMA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘DIVIDE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ENOTATION’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘EXP’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘True’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘XOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘RATIONALE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘AND’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘False’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MODULUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘VECTORCLOSE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘EQ’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘Infinity’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘PLUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘NaN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MINUS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘NE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘TAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘REMAINDER’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘GT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘GE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘LT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘LE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘TANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘COTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCSIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCOS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCTAN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCSEC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCSC’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCSINH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCOSH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCTANH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCSECH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCSCH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ARCCOTH’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SQRT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘ABS’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘FLOOR’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘CEIL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘FACTORIAL’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘NOT’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MAX’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘MIN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘SIGN’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘AVOGADRO’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘INVALID’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.cpp:285:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathHistory.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathHistory.cpp [ 12%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathObject.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathReaction.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathReaction.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathExpression.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathReaction.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp: In member function ‘bool CMathObject::compile(CMathContainer&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:643:10: warning: enumeration value ‘DelayValue’ not handled in switch [-Wswitch] 643 | switch (mValueType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:643:10: warning: enumeration value ‘DelayLag’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp: In member function ‘bool CMathObject::createIntensiveValueExpression(const CMetab*, CMathContainer&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:1833:22: warning: unused variable ‘pNumber’ [-Wunused-variable] 1833 | CObjectInterface * pNumber = NULL; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:1834:22: warning: unused variable ‘pCompartment’ [-Wunused-variable] 1834 | CObjectInterface * pCompartment = NULL; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp: In member function ‘bool CMathObject::createExtensiveValueExpression(const CMetab*, CMathContainer&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:1868:22: warning: variable ‘pIntensiveValue’ set but not used [-Wunused-but-set-variable] 1868 | CObjectInterface * pIntensiveValue = NULL; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathObject.cpp:1869:22: warning: variable ‘pCompartment’ set but not used [-Wunused-but-set-variable] 1869 | CObjectInterface * pCompartment = NULL; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathReaction.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathReaction.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathReaction.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/math/CMathUpdateSequence.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathUpdateSequence.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathUpdateSequence.cpp:17: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqParser_yacc.cpp [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser_lex.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqParser_lex.cpp [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CAnnotation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CAnnotation.cpp [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEq.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEq.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CCreator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CAnnotation.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CAnnotation.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqElement.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEq.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEq.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEq.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEq.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CAnnotation.cpp: In member function ‘void CAnnotation::createUndoData(CUndoData&, const CUndoData::Type&, const CData&, const CCore::Framework&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CAnnotation.cpp:160:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 160 | switch (type) | ^ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqElement.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqElement.cpp [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqInterface.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqElement.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqElement.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqInterface.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqInterface.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqInterface.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqInterface.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqInterface.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CChemEqParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqParser.cpp [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CCompartment.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CEvent.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CMMLOutput.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMMLOutput.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMMLOutput.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMMLOutput.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMMLOutput.cpp: In static member function ‘static void CMMLOutput::writeDifferentialEquations(std::ostream&, CModel*, bool, bool, bool)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMMLOutput.cpp:284:8: warning: variable ‘hasContents’ set but not used [-Wunused-but-set-variable] 284 | bool hasContents = false; | ^~~~~~~~~~~ [ 13%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CMetab.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CMetabNameInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetabNameInterface.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObjectReference.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetabNameInterface.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetabNameInterface.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelAnalyzer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelAnalyzer.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelAnalyzer.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelAnalyzer.cpp: In member function ‘CReactionResult CModelAnalyzer::checkReaction(const CReaction*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelAnalyzer.cpp:196:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 196 | switch (role) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:61: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h: In constructor ‘CModel::CModel(CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1220:86: warning: ‘CModel::mReactionsPerSpecies’ will be initialized after [-Wreorder] 1220 | std::map < const CMetab *, std::set< std::pair< const CReaction *, C_FLOAT64 > > > mReactionsPerSpecies; | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: warning: ‘CDataVectorN CModel::mValues’ [-Wreorder] 1205 | CDataVectorN< CModelValue > mValues; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:202:1: warning: when initialized here [-Wreorder] 202 | CModel::CModel(CDataContainer* pParent): | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp: In member function ‘bool CModel::handleUnusedMetabolites()’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:928:23: warning: variable ‘pStoiEnd’ set but not used [-Wunused-but-set-variable] 928 | C_FLOAT64 * pStoi, *pStoiEnd, *pRowEnd; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp: In function ‘const CObjectInterface* getDependentOrNull(const std::map&, int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:2598:22: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 2598 | if (it->second == index) return it->first; | ~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:2618:85: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:2598:22: warning: 2618 | const CFitTask* task = dynamic_cast(&dataModel->getTaskList()->operator[]("Parameter Estimation")); /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:2598:22: warning: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp: In member function ‘void CModel::updateInitialValues(std::set&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.cpp:3439:8: warning: unused variable ‘success’ [-Wunused-variable] 3439 | bool success = compileIfNecessary(NULL); | ^~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelExpansion.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelExpansion.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelExpansion.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameterGroup.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterGroup.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterGroup.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterGroup.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterGroup.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterGroup.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelParameterSet.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CModelValue.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterGroup.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp: In member function ‘virtual CUndoObjectInterface* CModelParameterSet::insert(const CData&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp:84:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 84 | switch (CModelParameter::TypeNames.toEnum(data.getProperty(CData::OBJECT_TYPE).toString(), CModelParameter::Type::unknown)) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp: In constructor ‘CModelParameterSet::CModelParameterSet(const std::string&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp:150:19: warning: base ‘CAnnotation’ will be initialized after [-Wreorder] 150 | mpReactions(NULL) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp:150:19: warning: base ‘CModelParameterGroup’ [-Wreorder] /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp:139:1: warning: when initialized here [-Wreorder] 139 | CModelParameterSet::CModelParameterSet(const std::string & name, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp: In constructor ‘CModelParameterSet::CModelParameterSet(const CModelParameterSet&, const CDataContainer*, const bool&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp:185:19: warning: base ‘CAnnotation’ will be initialized after [-Wreorder] 185 | mpReactions(NULL) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp:185:19: warning: base ‘CModelParameterGroup’ [-Wreorder] /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.cpp:173:1: warning: when initialized here [-Wreorder] 173 | CModelParameterSet::CModelParameterSet(const CModelParameterSet & src, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h: In constructor ‘CModelEntity::CModelEntity(const std::string&, const CDataContainer*, const std::string&, const CFlags&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:477:20: warning: ‘CModelEntity::mpModel’ will be initialized after [-Wreorder] 477 | mutable CModel * mpModel; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:458:15: warning: ‘std::string CModelEntity::mUnitExpression’ [-Wreorder] 458 | std::string mUnitExpression; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.cpp:173:1: warning: when initialized here [-Wreorder] 173 | CModelEntity::CModelEntity(const std::string & name, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h: In constructor ‘CModelEntity::CModelEntity(const CModelEntity&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:477:20: warning: ‘CModelEntity::mpModel’ will be initialized after [-Wreorder] 477 | mutable CModel * mpModel; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:458:15: warning: ‘std::string CModelEntity::mUnitExpression’ [-Wreorder] 458 | std::string mUnitExpression; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.cpp:200:1: warning: when initialized here [-Wreorder] 200 | CModelEntity::CModelEntity(const CModelEntity & src, | ^~~~~~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CMoiety.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMoiety.cpp [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CObjectLists.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CObjectLists.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CChemEqElement.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMoiety.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMoiety.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMoiety.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMoiety.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMoiety.cpp: In member function ‘void CMoiety::initObjects()’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMoiety.cpp:122:17: warning: unused variable ‘pObject’ [-Wunused-variable] 122 | CDataObject * pObject = addObjectReference("Amount", mIAmount, CDataObject::ValueDbl); | ^~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CObjectLists.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CReaction.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.cpp [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CReactionInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.cpp:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.cpp: In member function ‘std::string CReaction::getReactionScheme() const’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.cpp:2314:15: warning: unused variable ‘pModel’ [-Wunused-variable] 2314 | CDataModel* pModel = getObjectDataModel(); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObjectReference.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp: In member function ‘CUndoData CReactionInterface::createUndoData(const CCore::Framework&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:454:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 454 | switch (framework) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:508:27: warning: unused variable ‘pObject’ [-Wunused-variable] 508 | const CDataObject * pObject = NULL; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:568:27: warning: unused variable ‘pObject’ [-Wunused-variable] 568 | const CDataObject * pObject = NULL; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp: In member function ‘std::vector > CReactionInterface::getUnitVector(size_t) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:1295:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 1295 | switch (getUsage(index)) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp: In member function ‘std::string CReactionInterface::getUnit(size_t) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:1347:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 1347 | switch (getUsage(index)) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp: In member function ‘std::string CReactionInterface::getEffectiveKineticLawUnit() const’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:1683:10: warning: enumeration value ‘Default’ not handled in switch [-Wswitch] 1683 | switch (getEffectiveKineticLawUnitType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.cpp:1683:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/model/CState.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/model/CState.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CState.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CState.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ [ 14%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesMethod.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesMethod.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesMethod.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesMethod.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesProblem.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesProblem.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesProblem.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesMethod.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesProblem.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/moieties/CMoietiesTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesTask.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/CInternalSolver.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CInternalSolver.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODA.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CLSODA.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesTask.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesTask.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/moieties/CMoietiesTask.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/CLSODAR.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CLSODAR.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CRadau5.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/CRadau5.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/CRadau5.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/CRadau5.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp: In member function ‘int CRadau5::operator()(int*, evalF, double*, double*, double*, double*, double*, double*, int*, evalJ, int*, int*, int*, evalM, int*, int*, int*, evalO, int*, double*, int*, int*, int*, double*, int*, int*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:127:17: warning: unused variable ‘io___10’ [-Wunused-variable] 127 | static cilist io___10 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:128:17: warning: unused variable ‘io___12’ [-Wunused-variable] 128 | static cilist io___12 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:129:17: warning: unused variable ‘io___15’ [-Wunused-variable] 129 | static cilist io___15 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:130:17: warning: unused variable ‘io___17’ [-Wunused-variable] 130 | static cilist io___17 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:131:17: warning: unused variable ‘io___19’ [-Wunused-variable] 131 | static cilist io___19 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:132:17: warning: unused variable ‘io___24’ [-Wunused-variable] 132 | static cilist io___24 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:133:17: warning: unused variable ‘io___29’ [-Wunused-variable] 133 | static cilist io___29 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:134:17: warning: unused variable ‘io___31’ [-Wunused-variable] 134 | static cilist io___31 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:135:17: warning: unused variable ‘io___33’ [-Wunused-variable] 135 | static cilist io___33 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:136:17: warning: unused variable ‘io___36’ [-Wunused-variable] 136 | static cilist io___36 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:137:17: warning: unused variable ‘io___39’ [-Wunused-variable] 137 | static cilist io___39 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:138:17: warning: unused variable ‘io___43’ [-Wunused-variable] 138 | static cilist io___43 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:139:17: warning: unused variable ‘io___50’ [-Wunused-variable] 139 | static cilist io___50 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:140:17: warning: unused variable ‘io___52’ [-Wunused-variable] 140 | static cilist io___52 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:141:17: warning: unused variable ‘io___68’ [-Wunused-variable] 141 | static cilist io___68 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:142:17: warning: unused variable ‘io___72’ [-Wunused-variable] 142 | static cilist io___72 = {0, 6, 0, 0, 0 }; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp: In function ‘int radcor_(int*, CRadau5::evalF, double*, double*, double*, double*, double*, double*, double*, int*, CRadau5::evalJ, int*, int*, int*, CRadau5::evalM, int*, int*, CRadau5::evalO, int*, int*, int*, double*, double*, double*, double*, double*, double*, int*, int*, long int*, int*, int*, int*, long int*, double*, double*, int*, int*, int*, long int*, long int*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, int*, int*, int*, int*, int*, int*, int*, double*, int*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:1071:20: warning: variable ‘index1’ set but not used [-Wunused-but-set-variable] 1071 | static C_LOGICAL index1, index2, index3, caljac; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:1107:17: warning: unused variable ‘io___176’ [-Wunused-variable] 1107 | static cilist io___176 = {0, 6, 0, fmt_979, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:1108:17: warning: unused variable ‘io___177’ [-Wunused-variable] 1108 | static cilist io___177 = {0, 6, 0, 0, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:1109:17: warning: unused variable ‘io___178’ [-Wunused-variable] 1109 | static cilist io___178 = {0, 6, 0, fmt_979, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:1110:17: warning: unused variable ‘io___179’ [-Wunused-variable] 1110 | static cilist io___179 = {0, 6, 0, 0, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:1111:17: warning: unused variable ‘io___180’ [-Wunused-variable] 1111 | static cilist io___180 = {0, 6, 0, fmt_979, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:1112:17: warning: unused variable ‘io___181’ [-Wunused-variable] 1112 | static cilist io___181 = {0, 6, 0, 0, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:1113:17: warning: unused variable ‘io___182’ [-Wunused-variable] 1113 | static cilist io___182 = {0, 6, 0, fmt_979, 0 }; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp: At global scope: /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:53:14: warning: ‘c__3’ defined but not used [-Wunused-variable] 53 | static C_INT c__3 = 3; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:52:14: warning: ‘c__5’ defined but not used [-Wunused-variable] 52 | static C_INT c__5 = 5; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:51:14: warning: ‘c__1’ defined but not used [-Wunused-variable] 51 | static C_INT c__1 = 1; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/CRadau5.cpp:50:14: warning: ‘c__9’ defined but not used [-Wunused-variable] 50 | static C_INT c__9 = 9; | ^~~~ [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/Cxerrwd.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/Cxerrwd.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/common.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/common.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dbnorm.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dbnorm.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dc_decsol.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dc_decsol.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dc_decsol.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dc_decsol.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dc_decsol.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dcfode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dcfode.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/decsol.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/decsol.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/decsol.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/decsol.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/decsol.cpp [ 15%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dewset.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dewset.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dfnorm.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dfnorm.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dintdy.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dintdy.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dmnorm.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dmnorm.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dprja.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dprja.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/drcheck.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/drcheck.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dsolsy.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dsolsy.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/odepack++/dstoda.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/odepack++/dstoda.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CContext.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CContext.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/OpenMP/CContext.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/OpenMP/CContext.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CContext.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CMathContext.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CMathContext.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/OpenMP/CMathContext.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/OpenMP/CMathContext.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CRandomContext.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/OpenMP/CRandomContext.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/OpenMP/CRandomContext.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/OpenMP/CRandomContext.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CRandomContext.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CRandomContext.cpp: In destructor ‘CRandomContext::~CRandomContext()’: /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CRandomContext.cpp:17:1: warning: label ‘Base’ defined but not used [-Wunused-label] 17 | Base: master() = NULL; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CRandomContext.cpp: In member function ‘void CRandomContext::init(CRandom::Type, unsigned int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CRandomContext.cpp:28:1: warning: label ‘Base’ defined but not used [-Wunused-label] 28 | Base: master() = NULL; | ^~~~ [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CNL2SOL.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CNL2SOL.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CNL2SOL.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CNL2SOL.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp:9831:3: warning: "/*" within comment [-Wcomment] 9831 | /* ret_val = i1mach_(&mdperm[*k - 1]); */ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.cpp:6: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp: In function ‘doublereal d1mach_(integer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp:391:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘integer’ {aka ‘int’} [-Wformat=] 391 | fprintf(stderr, "invalid argument: d1mach(%ld)\n", *i); | ~~^ ~~ | | | | | integer {aka int} | long int | %d /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp: In function ‘int da7sst_(integer*, integer*, integer*, doublereal*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp:1090:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 1090 | if (v[6] > 0. && v[6] <= emax || v[6] == 0. && v[7] == 0.) | ~~~~~~~~~~^~~~~~~~~~~~~~~ [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptItem.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp: In function ‘int dg7itb_(doublereal*, doublereal*, doublereal*, integer*, integer*, integer*, integer*, integer*, doublereal*, doublereal*, doublereal*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp:2092:41: warning: variable ‘rstrst’ set but not used [-Wunused-but-set-variable] 2092 | static integer td1, tg1, lstgst, pp1, rstrst; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp: In function ‘int dparck_(integer*, doublereal*, integer*, integer*, integer*, integer*, doublereal*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp:6647:15: warning: unused variable ‘vn’ [-Wunused-variable] 6647 | static char vn[4 * 2 * 34] = ""; | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp:6663:15: warning: unused variable ‘varnm’ [-Wunused-variable] 6663 | static char varnm[1 * 2] = ""; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp:6664:15: warning: unused variable ‘sh’ [-Wunused-variable] 6664 | static char sh[1 * 2] = ""; | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp: In function ‘integer i1mach_(integer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp:9778:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘integer’ {aka ‘int’} [-Wformat=] 9778 | fprintf(stderr, "invalid argument: i1mach(%ld)\n", *i); | ~~^ ~~ | | | | | integer {aka int} | long int | %d /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp: In function ‘integer i7mdcn_(integer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CNL2SOL.cpp:9833:43: warning: suggest parentheses around ‘-’ inside ‘<<’ [-Wparentheses] 9833 | ret_val = i1mach_(&mdperm[(0 + (0 + (*k - 1 << 2))) / 4]); | ~~~^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptItem.cpp: In member function ‘void COptItem::updatePrerequisites(const std::vector&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptItem.cpp:503:45: warning: variable ‘it’ set but not used [-Wunused-but-set-variable] 503 | std::vector< COptItem * >::const_iterator it = influencingIntervals.begin(); | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptItem.cpp:504:45: warning: variable ‘end’ set but not used [-Wunused-but-set-variable] 504 | std::vector< COptItem * >::const_iterator end = influencingIntervals.end(); | ^~~ [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptLog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptLog.cpp [ 16%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogEntry.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogEntry.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptLogEntry.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptLogEntry.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptLogEntry.cpp [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptLogItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptLogItem.cpp [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptTask.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodCoranaWalk.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodCoranaWalk.cpp [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodDE.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodDE.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodCoranaWalk.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodCoranaWalk.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodDE.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodDE.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodEP.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodEP.cpp [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGA.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodGA.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodEP.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodEP.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodGA.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodGA.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodGASR.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodGASR.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodGASR.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodGASR.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodHookeJeeves.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodHookeJeeves.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodHookeJeeves.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodHookeJeeves.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodLevenbergMarquardt.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodLevenbergMarquardt.cpp [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNL2SOL.cpp.o In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodLevenbergMarquardt.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodLevenbergMarquardt.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNL2SOL.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNL2SOL.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNL2SOL.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodNL2SOL.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodLevenbergMarquardt.cpp: In member function ‘virtual bool COptMethodLevenbergMarquardt::optimise()’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodLevenbergMarquardt.cpp:132:28: warning: variable ‘nrhs’ set but not used [-Wunused-but-set-variable] 132 | C_INT dim, starts, info, nrhs; | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodNL2SOL.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodNL2SOL.cpp:13: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodNelderMead.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodNelderMead.cpp [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPS.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodNelderMead.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodNelderMead.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:107: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 107 | #pragma omp critical /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:120: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 120 | #pragma omp critical /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:201: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 201 | #pragma omp critical /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:342: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 342 | #pragma omp critical /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:626: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 626 | #pragma omp parallel for schedule(runtime) /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:646: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 646 | #pragma omp parallel for schedule(runtime) In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:646: warning: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:646: warning: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp: In member function ‘bool COptMethodPS::reachedStdDeviation()’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPS.cpp:482:15: warning: unused variable ‘pEnd’ [-Wunused-variable] 482 | C_FLOAT64 * pEnd = pValue + mPopulationSize; | ^~~~ [ 17%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodPraxis.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPraxis.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPraxis.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPraxis.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPraxis.cpp: In member function ‘virtual bool COptMethodPraxis::optimise()’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPraxis.cpp:99:13: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 99 | C_FLOAT64 tmp = 0.0; | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodPraxis.cpp:100:13: warning: variable ‘machep’ set but not used [-Wunused-but-set-variable] 100 | C_FLOAT64 machep, stepmx, d1, d2; | ^~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSA.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSA.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSA.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSA.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSRES.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSRES.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSRES.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSRES.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSS.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSS.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSS.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSS.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSS.cpp: In member function ‘bool COptMethodSS::combination()’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSS.cpp:820:13: warning: variable ‘la’ set but not used [-Wunused-but-set-variable] 820 | C_FLOAT64 la; // for orders of magnitude | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSS.cpp:827:22: warning: variable ‘xprval’ set but not used [-Wunused-but-set-variable] 827 | C_FLOAT64 xnewval, xprval; // to hold temp value of "parent" in go-beyond strategy | ^~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodStatistics.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodStatistics.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodStatistics.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodStatistics.cpp: In member function ‘virtual bool COptMethodStatistics::optimise()’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodStatistics.cpp:93:8: warning: variable ‘Continue’ set but not used [-Wunused-but-set-variable] 93 | bool Continue = true; | ^~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodSteepestDescent.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSteepestDescent.cpp [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptMethodTruncatedNewton.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodTruncatedNewton.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSteepestDescent.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodSteepestDescent.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodTruncatedNewton.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodTruncatedNewton.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodTruncatedNewton.cpp: In member function ‘int COptMethodTruncatedNewton::sFun(int*, double*, double*, double*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodTruncatedNewton.cpp:328:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 328 | for (size_t i = 0; i < mVariableSize; i++, g++) | ~~^~~~~~~~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptPopulationMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.cpp [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptTask.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:51: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:53: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h: In constructor ‘COptProblem::COptProblem(const CTaskEnum::Task&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:662:13: warning: ‘COptProblem::mSolutionValue’ will be initialized after [-Wreorder] 662 | C_FLOAT64 mSolutionValue; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:657:12: warning: ‘COptProblem::sCounter COptProblem::mCounters’ [-Wreorder] 657 | sCounter mCounters; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:84:1: warning: when initialized here [-Wreorder] 84 | COptProblem::COptProblem(const CTaskEnum::Task & type, | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h: In constructor ‘COptProblem::COptProblem(const COptProblem&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:662:13: warning: ‘COptProblem::mSolutionValue’ will be initialized after [-Wreorder] 662 | C_FLOAT64 mSolutionValue; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:657:12: warning: ‘COptProblem::sCounter COptProblem::mCounters’ [-Wreorder] 657 | sCounter mCounters; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:129:1: warning: when initialized here [-Wreorder] 129 | COptProblem::COptProblem(const COptProblem & src, | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp: In member function ‘virtual void COptProblem::calculateValue()’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:184:45: warning: variable ‘it’ set but not used [-Wunused-but-set-variable] 184 | std::vector< COptItem * >::const_iterator it = mpOptItems->begin(); | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:185:45: warning: variable ‘end’ set but not used [-Wunused-but-set-variable] 185 | std::vector< COptItem * >::const_iterator end = mpOptItems->end(); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp: In member function ‘double COptProblem::evalMinimizeIntervals(const double&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:826:23: warning: unused variable ‘SQRT_EPSILON’ [-Wunused-variable] 826 | static const double SQRT_EPSILON = sqrt(std::numeric_limits< double >::epsilon()); | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp: In member function ‘virtual bool COptProblem::setSolution(const double&, const CVector&, const bool&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:1014:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 1014 | if (variables.size() != 0) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:1158:77: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:1014:6: warning: 1158 | dynamic_cast< CDataVectorN< CCopasiTask > *>(getObjectAncestor("Vector")); /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.cpp:1014:6: warning: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/COptTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptTask.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptTask.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptTask.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptTask.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptTask.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptTask.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CPraxis.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CPraxis.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CPraxis.cpp: In member function ‘double CPraxis::operator()(double, double, int, int, double*, FPraxis*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CPraxis.cpp:1097:11: warning: variable ‘seed’ set but not used [-Wunused-but-set-variable] 1097 | C_INT32 seed; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CPraxis.cpp: In member function ‘CPraxis::minfit(int, double, double*, double*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CPraxis.cpp:337:11: warning: ‘f’ may be used uninitialized [-Wmaybe-uninitialized] 337 | if (0.0 <= f) | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CPraxis.cpp:236:13: note: ‘f’ was declared here 236 | C_FLOAT64 f; | ^ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CRandomSearch.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CRandomSearch.cpp [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CRealProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CRealProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CRandomSearch.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CRealProblem.h:53, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CRealProblem.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/CTruncatedNewton.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp: In member function ‘int CTruncatedNewton::lmqn_(int*, int*, double*, double*, double*, double*, int*, FTruncatedNewton*, int*, int*, int*, double*, double*, double*, double*, COptLog*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp:387:13: warning: variable ‘fold’ set but not used [-Wunused-but-set-variable] 387 | C_FLOAT64 fold, oldf; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp:391:9: warning: variable ‘lhyr’ set but not used [-Wunused-but-set-variable] 391 | C_INT lhyr; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp:401:27: warning: variable ‘fstop’ set but not used [-Wunused-but-set-variable] 401 | C_FLOAT64 gnorm, ftest, fstop, pnorm, rteps, xnorm; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp: In member function ‘int CTruncatedNewton::lmqnbc_(int*, int*, double*, double*, double*, double*, int*, FTruncatedNewton*, double*, double*, int*, int*, int*, int*, double*, double*, double*, double*, COptLog*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp:761:13: warning: variable ‘fold’ set but not used [-Wunused-but-set-variable] 761 | C_FLOAT64 fold, oldf; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp:766:9: warning: variable ‘lhyr’ set but not used [-Wunused-but-set-variable] 766 | C_INT lhyr; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp:777:13: warning: variable ‘fstop’ set but not used [-Wunused-but-set-variable] 777 | C_FLOAT64 fstop, pnorm, rteps, xnorm; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp: In function ‘int initp3_(double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/CTruncatedNewton.cpp:2398:13: warning: variable ‘cond’ set but not used [-Wunused-but-set-variable] 2398 | C_FLOAT64 cond; | ^~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/optimization/FminBrent.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/optimization/FminBrent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/optimization/FminBrent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/optimization/FminBrent.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/FminBrent.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/output/COutputHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/output/COutputHandler.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperiment.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/output/COutputHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/output/COutputHandler.cpp:15: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.cpp: In member function ‘double CExperiment::getErrorMeanSD(const CObjectInterface*, const double&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.cpp:1673:20: warning: unused variable ‘pScale’ [-Wunused-variable] 1673 | const C_FLOAT64 *pScale = mScale.array() + it->second; | ^~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentFileInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentFileInfo.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentObjectMap.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentObjectMap.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentObjectMap.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentObjectMap.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentObjectMap.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentSet.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentSet.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentSet.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CExperimentSet.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentSet.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitItem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentSet.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentSet.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentSet.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentSet.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/parameterFitting/CFitTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitTask.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataTimer.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:41: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp:342:85: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 342 | pTasks = dynamic_cast *>(getObjectAncestor("Vector")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp: In member function ‘virtual bool CFitProblem::calculate()’: /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp:1046:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1046 | for (j = 0; j < kmax && Continue; j++) // For each data row; | ~~^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp:1094:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1094 | for (j = 0; j < kmax && Continue; j++) // For each data row; | ~~^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp:1195:34: warning: variable ‘it’ set but not used [-Wunused-but-set-variable] 1195 | auto it = mpOptItems->begin(); | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp: In member function ‘virtual void CFitProblem::updateContainer(const bool&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.cpp:1333:17: warning: variable ‘pExp’ set but not used [-Wunused-but-set-variable] 1333 | CExperiment * pExp = NULL; | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitTask.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptTask.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitTask.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitTask.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitTask.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/plot/COutputDefinitionVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/plot/CPlotColors.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotColors.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/plot/CPlotItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotItem.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/plot/CPlotSpecification.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.cpp [ 19%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/CPermutation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/randomGenerator/CPermutation.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/CRandom.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/randomGenerator/CRandom.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cmt19937.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/randomGenerator/Cmt19937.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/randomGenerator/Cr250.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/randomGenerator/Cr250.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CDataHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CDataHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CDataHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CDataHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CKeyFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/report/CKeyFactory.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.cpp:8: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h: In constructor ‘CDataHandler::CDataHandler(bool)’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h:35:37: warning: ‘CDataHandler::mAfterObjectList’ will be initialized after [-Wreorder] 35 | std::vector< CObjectInterface * > mAfterObjectList; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h:34:37: warning: ‘std::vector CDataHandler::mDuringObjectList’ [-Wreorder] 34 | std::vector< CObjectInterface * > mDuringObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.cpp:26:1: warning: when initialized here [-Wreorder] 26 | CDataHandler::CDataHandler(bool separate) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h:34:37: warning: ‘CDataHandler::mDuringObjectList’ will be initialized after [-Wreorder] 34 | std::vector< CObjectInterface * > mDuringObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h:33:37: warning: ‘std::vector CDataHandler::mBeforeObjectList’ [-Wreorder] 33 | std::vector< CObjectInterface * > mBeforeObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.cpp:26:1: warning: when initialized here [-Wreorder] 26 | CDataHandler::CDataHandler(bool separate) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h: In copy constructor ‘CDataHandler::CDataHandler(const CDataHandler&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h:35:37: warning: ‘CDataHandler::mAfterObjectList’ will be initialized after [-Wreorder] 35 | std::vector< CObjectInterface * > mAfterObjectList; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h:34:37: warning: ‘std::vector CDataHandler::mDuringObjectList’ [-Wreorder] 34 | std::vector< CObjectInterface * > mDuringObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.cpp:40:1: warning: when initialized here [-Wreorder] 40 | CDataHandler::CDataHandler(const CDataHandler & src) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h:34:37: warning: ‘CDataHandler::mDuringObjectList’ will be initialized after [-Wreorder] 34 | std::vector< CObjectInterface * > mDuringObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.h:33:37: warning: ‘std::vector CDataHandler::mBeforeObjectList’ [-Wreorder] 33 | std::vector< CObjectInterface * > mBeforeObjectList; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.cpp:40:1: warning: when initialized here [-Wreorder] 40 | CDataHandler::CDataHandler(const CDataHandler & src) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.cpp: In member function ‘virtual void CDataHandler::output(const COutputInterface::Activity&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CDataHandler.cpp:171:10: warning: enumeration value ‘MONITORING’ not handled in switch [-Wswitch] 171 | switch (activity) | ^ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/COutputAssistant.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/report/COutputAssistant.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CReport.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReport.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/report/COutputAssistant.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/report/COutputAssistant.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/report/COutputAssistant.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/report/COutputAssistant.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReport.cpp: In member function ‘virtual void CReport::output(const COutputInterface::Activity&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReport.cpp:136:10: warning: enumeration value ‘MONITORING’ not handled in switch [-Wswitch] 136 | switch (activity) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/report/COutputAssistant.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/COutputAssistant.cpp:723:57: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 723 | CCopasiTask * pTask = &pDataModel->getTaskList()->operator[]("Parameter Estimation"); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CReportBody.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportBody.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CReportDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinition.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinition.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinition.h: In constructor ‘CReportDefinition::CReportDefinition(const CReportDefinition&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinition.h:68:20: warning: ‘CReportDefinition::mPrecision’ will be initialized after [-Wreorder] 68 | unsigned C_INT32 mPrecision; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinition.h:60:38: warning: ‘std::vector CReportDefinition::mHeaderVector’ [-Wreorder] 60 | std::vector mHeaderVector; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinition.cpp:143:1: warning: when initialized here [-Wreorder] 143 | CReportDefinition::CReportDefinition(const CReportDefinition & src, | ^~~~~~~~~~~~~~~~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/report/CReportDefinitionVector.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/CCellDesignerImporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CCellDesignerImporter.cpp [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/CSBMLExporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CCellDesignerImporter.cpp: In static member function ‘static REACTION_TYPE CCellDesignerImporter::reactionTypeToEnum(std::string)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CCellDesignerImporter.cpp:4866:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 4866 | bool status; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CCellDesignerImporter.cpp: In static member function ‘static MODIFICATION_LINK_TYPE CCellDesignerImporter::modificationLinkTypeToEnum(std::string)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CCellDesignerImporter.cpp:4954:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 4954 | bool status; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CCellDesignerImporter.cpp: In static member function ‘static MODIFICATION_TYPE CCellDesignerImporter::modificationTypeToEnum(std::string)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CCellDesignerImporter.cpp:5022:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 5022 | bool status; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CCellDesignerImporter.cpp: In static member function ‘static SPECIES_MODIFICATION_TYPE CCellDesignerImporter::speciesModificationTypeToEnum(std::string)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CCellDesignerImporter.cpp:10901:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 10901 | bool status; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.h:49, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameter.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLDefaultStyles.h:17, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:80: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3898, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:97: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp: In function ‘void addSymbolComponentToUnitDefinition(UnitDefinition*, CUnit::SymbolComponent&, const std::string&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:3109:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3109 | if (unitKind != C_INVALID_INDEX && use_d_prefix) /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:3114:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3114 | if (unitKind == C_INVALID_INDEX) /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp: In member function ‘void CSBMLExporter::addInitialAssignmentsToModel(const CDataModel&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:3397:11: warning: unused variable ‘result’ [-Wunused-variable] 3397 | int result = model->addParameter(param); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp: In member function ‘bool CSBMLExporter::createSBMLDocument(CDataModel&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:3741:15: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 3741 | int result; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp: In static member function ‘static XMLNode* CSBMLExporter::createSBMLNotes(const std::string&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:8125:31: warning: unused variable ‘tmp’ [-Wunused-variable] 8125 | int tmp = pResult->addNamespace("http://www.w3.org/1999/xhtml", prefix); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.cpp:8191:27: warning: unused variable ‘tmp’ [-Wunused-variable] 8191 | int tmp = pResult->addNamespace("http://www.w3.org/1999/xhtml", ""); | ^~~ [ 20%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/ConverterASTNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/ConverterASTNode.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLImporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp:72: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp:79: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp:84: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp:34: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalStyle.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/SBMLDocumentLoader.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp:100: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp:101: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp: In member function ‘void SBMLImporter::replaceAmountReferences(ConverterASTNode*, Model*, double, std::map&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp:3620:43: warning: variable ‘pSpecies’ set but not used [-Wunused-but-set-variable] 3620 | ASTNode *pAvogadro = NULL, *pSpecies = NULL; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp: In member function ‘void SBMLImporter::applyConversionFactors()’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.cpp:7861:25: warning: variable ‘pE’ set but not used [-Wunused-but-set-variable] 7861 | const CChemEqElement* pE = NULL; | ^~ [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLIncompatibility.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLIncompatibility.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLReference.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLReference.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUnitSupport.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUnitSupport.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUnitSupport.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUnitSupport.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUnitSupport.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUnitSupport.cpp:13: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUnitSupport.cpp: In member function ‘void SBMLUnitSupport::importUnitsFromSBMLDocument(Model*, CModel*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUnitSupport.cpp:172:24: warning: unused variable ‘pUDef’ [-Wunused-variable] 172 | UnitDefinition * pUDef = NULL; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUnitSupport.cpp: In member function ‘void SBMLUnitSupport::checkElementUnits(const Model*, CModel*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUnitSupport.cpp:1042:8: warning: variable ‘inconsistentDimensionlessUnits’ set but not used [-Wunused-but-set-variable] 1042 | bool inconsistentDimensionlessUnits = false; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUnitSupport.cpp:1043:8: warning: unused variable ‘defaultVolumeUsed’ [-Wunused-variable] 1043 | bool defaultVolumeUsed = false; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUnitSupport.cpp:1044:8: warning: unused variable ‘defaultAreaUsed’ [-Wunused-variable] 1044 | bool defaultAreaUsed = false; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUnitSupport.cpp:1045:8: warning: unused variable ‘defaultLengthUsed’ [-Wunused-variable] 1045 | bool defaultLengthUsed = false; | ^~~~~~~~~~~~~~~~~ [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/SBMLUtils.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLUtils.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbml/StdException.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/StdException.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbmlunit/CSBMLunit.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/CSBMLunitInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbmlunit/CSBMLunitInterface.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMML.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbmlunit/Expression2PresentationMML.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sbmlunit/Expression2PresentationMMLUnits.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sbmlunit/Expression2PresentationMMLUnits.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/scan/CScanMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.cpp [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/scan/CScanProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanProblem.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanProblem.cpp:92:34: required from here 92 | CDataVectorN< CCopasiTask >::iterator it = pDataModel->getTaskList()->begin(); | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.cpp: In member function ‘bool CScanMethod::loop(size_t)’: /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.cpp:574:10: warning: unused variable ‘failCounter’ [-Wunused-variable] 574 | size_t failCounter = 0; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.cpp: In member function ‘CScanItemRandom::step()’: /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.cpp:388:22: warning: ‘Value’ may be used uninitialized [-Wmaybe-uninitialized] 388 | *mpObjectValue = Value; | ~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.cpp:339:13: note: ‘Value’ was declared here 339 | C_FLOAT64 Value; | ^~~~~ [ 21%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/scan/CScanTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanTask.cpp [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanTask.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanTask.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanMethod.h:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanTask.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanTask.cpp: In member function ‘bool CScanTask::processCallback()’: /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanTask.cpp:201:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 201 | if (success && !mOutputInSubtask) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanTask.cpp:261:48: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanTask.cpp:201:6: warning: 261 | (&pDataModel->getTaskList()->operator[]("Steady-State")); /builddir/build/BUILD/COPASI-Build-284/copasi/scan/CScanTask.cpp:201:6: warning: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensMethod.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensMethod.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensMethod.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensMethod.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensMethod.cpp:492:48: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: 492 | (&pDataModel->getTaskList()->operator[]("Steady-State")); /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensMethod.cpp: In member function ‘bool CSensMethod::initialize(CSensProblem*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensMethod.cpp:484:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 484 | switch (mpProblem->getSubTaskType()) | ^ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.cpp:322:34: required from here 322 | CDataVectorN< CCopasiTask >::iterator it = pDataModel->getTaskList()->begin(); | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.cpp: In static member function ‘static std::vector CSensProblem::getPossibleTargetFunctions(SubTaskType)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.cpp:504:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 504 | switch (type) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.cpp: In static member function ‘static std::vector CSensProblem::getPossibleVariables(SubTaskType)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.cpp:572:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 572 | switch (type) | ^ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sensitivities/CSensTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensTask.cpp [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CEigen.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CEigen.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensTask.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensTask.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensTask.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensTask.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensTask.cpp: In member function ‘virtual bool CSensTask::process(const bool&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensTask.cpp:106:17: warning: unused variable ‘pProblem’ [-Wunused-variable] 106 | CSensProblem* pProblem = | ^~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:15, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp: In member function ‘void CMCAMethod::calculateUnscaledElasticities(double)’: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp:226:32: warning: unused variable ‘TransientDependencies’ [-Wunused-variable] 226 | const CMathDependencyGraph & TransientDependencies = mpContainer->getTransientDependencies(); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp:229:17: warning: unused variable ‘pParticleFluxObjectEnd’ [-Wunused-variable] 229 | CMathObject * pParticleFluxObjectEnd = pParticleFluxObject + numReacs; | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp:231:17: warning: unused variable ‘pSpeciesObjectEnd’ [-Wunused-variable] 231 | CMathObject * pSpeciesObjectEnd = pSpeciesObjectStart + numMetabs; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp: In member function ‘bool CMCAMethod::calculateUnscaledConcentrationCC()’: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp:330:9: warning: unused variable ‘N’ [-Wunused-variable] 330 | C_INT N = (C_INT) aux2.numRows(); | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp: In member function ‘bool CMCAMethod::scaleMCA(const bool&, double)’: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.cpp:394:10: warning: unused variable ‘numReacs’ [-Wunused-variable] 394 | size_t numReacs = mpContainer->getParticleFluxes().size(); | ^~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCAProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAProblem.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAProblem.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCATask.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAProblem.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CMCATask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCATask.cpp [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CNewtonMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCATask.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCATask.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCATask.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.h:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCATask.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.h:235: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.h: In constructor ‘CNewtonMethod::CNewtonMethod(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.h:92:13: warning: ‘CNewtonMethod::mTargetRate’ will be initialized after [-Wreorder] 92 | C_FLOAT64 mTargetRate; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.h:91:13: warning: ‘double CNewtonMethod::mTargetDistance’ [-Wreorder] 91 | C_FLOAT64 mTargetDistance; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:54:1: warning: when initialized here [-Wreorder] 54 | CNewtonMethod::CNewtonMethod(const CDataContainer * pParent, | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.h: In constructor ‘CNewtonMethod::CNewtonMethod(const CNewtonMethod&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.h:92:13: warning: ‘CNewtonMethod::mTargetRate’ will be initialized after [-Wreorder] 92 | C_FLOAT64 mTargetRate; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.h:91:13: warning: ‘double CNewtonMethod::mTargetDistance’ [-Wreorder] 91 | C_FLOAT64 mTargetDistance; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:83:1: warning: when initialized here [-Wreorder] 83 | CNewtonMethod::CNewtonMethod(const CNewtonMethod & src, | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp: In member function ‘std::string CNewtonMethod::targetValueToString() const’: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:685:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 685 | switch (mTargetCriterion) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:905:69: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:685:10: warning: 905 | dynamic_cast< CTrajectoryTask * >(&pDataModel->getTaskList()->operator[]("Time-Course")); /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:685:10: warning: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp: In member function ‘virtual bool CNewtonMethod::initialize(const CSteadyStateProblem*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CNewtonMethod.cpp:858:23: warning: variable ‘pTrajectoryMethod’ set but not used [-Wunused-but-set-variable] 858 | CTrajectoryMethod * pTrajectoryMethod = NULL; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:151:11: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:151:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCATask.h:41: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCATask.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateMethod.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateProblem.cpp [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/steadystate/CSteadyStateTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateProblem.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateProblem.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateProblem.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:41: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensLsodaMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensLsodaMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensLsodaMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensLsodaMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensLsodaMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensProblem.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensLsodaMethod.cpp:14: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensMethod.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensLsodaMethod.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensLsodaMethod.cpp:13: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensLsodaMethod.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensLsodaMethod.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensMethod.h:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensLsodaMethod.cpp: In member function ‘virtual void CTimeSensLsodaMethod::start()’: /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensLsodaMethod.cpp:565:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 565 | for (i = mSystemSize + 1; i < mData.dim; ++i) | ~~^~~~~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensMethod.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensMethod.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensMethod.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensProblem.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensMethod.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensMethod.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensProblem.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensProblem.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensProblem.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensProblem.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/timesens/CTimeSensTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensTask.cpp [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensProblem.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensTask.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensTask.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensTask.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensTask.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensTask.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensTask.h:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensTask.cpp:153:84: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 153 | mpSteadyState = dynamic_cast(&pDataModel->getTaskList()->operator[]("Steady-State")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.h:56, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.cpp:54: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.cpp:56: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.h:64: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.h:65: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.cpp:64: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.cpp: In member function ‘void CHybridMethod::calculateDerivative(CVectorCore&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.cpp:330:11: warning: unused variable ‘bal’ [-Wunused-variable] 330 | C_INT32 bal = 0; | ^~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridMethodODE45.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.cpp:50: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.cpp:51: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.cpp:64: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.cpp:65: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.h: In constructor ‘CHybridMethodODE45::CHybridMethodODE45(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.h:361:26: warning: ‘CHybridMethodODE45::mSpeciesRateUpdateSequence’ will be initialized after [-Wreorder] 361 | CCore::CUpdateSequence mSpeciesRateUpdateSequence; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.h:330:31: warning: ‘CRungeKutta::RKMethodStatus CHybridMethodODE45::mRKMethodStatus’ [-Wreorder] 330 | CRungeKutta::RKMethodStatus mRKMethodStatus; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.cpp:83:1: warning: when initialized here [-Wreorder] 83 | CHybridMethodODE45::CHybridMethodODE45(const CDataContainer * pParent, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.h: In constructor ‘CHybridMethodODE45::CHybridMethodODE45(const CHybridMethodODE45&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.h:361:26: warning: ‘CHybridMethodODE45::mSpeciesRateUpdateSequence’ will be initialized after [-Wreorder] 361 | CCore::CUpdateSequence mSpeciesRateUpdateSequence; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.h:330:31: warning: ‘CRungeKutta::RKMethodStatus CHybridMethodODE45::mRKMethodStatus’ [-Wreorder] 330 | CRungeKutta::RKMethodStatus mRKMethodStatus; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethodODE45.cpp:141:1: warning: when initialized here [-Wreorder] 141 | CHybridMethodODE45::CHybridMethodODE45(const CHybridMethodODE45 & src, | ^~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionLSODAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionLSODAMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.h:64, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionLSODAMethod.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionLSODAMethod.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.h:56: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionLSODAMethod.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CHybridNextReactionRKMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionRKMethod.cpp [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.h:64, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionRKMethod.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionRKMethod.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridMethod.h:56: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionRKMethod.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionRKMethod.cpp: In member function ‘virtual void CHybridNextReactionRKMethod::integrateDeterministicPart(double)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CHybridNextReactionRKMethod.cpp:93:22: warning: unused variable ‘react’ [-Wunused-variable] 93 | CHybridStochFlag * react = NULL; | ^~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CLsodaMethod2.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.h:12, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.cpp:13: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.h: In constructor ‘CLsodaMethod2::CLsodaMethod2(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.h:247:9: warning: ‘CLsodaMethod2::mNumRoots’ will be initialized after [-Wreorder] 247 | C_INT mNumRoots; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.h:187:13: warning: ‘double CLsodaMethod2::mTime’ [-Wreorder] 187 | C_FLOAT64 mTime; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.cpp:28:1: warning: when initialized here [-Wreorder] 28 | CLsodaMethod2::CLsodaMethod2(const CDataContainer * pParent, | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.h: In constructor ‘CLsodaMethod2::CLsodaMethod2(const CLsodaMethod2&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.h:247:9: warning: ‘CLsodaMethod2::mNumRoots’ will be initialized after [-Wreorder] 247 | C_INT mNumRoots; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.h:187:13: warning: ‘double CLsodaMethod2::mTime’ [-Wreorder] 187 | C_FLOAT64 mTime; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.cpp:61:1: warning: when initialized here [-Wreorder] 61 | CLsodaMethod2::CLsodaMethod2(const CLsodaMethod2 & src, | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.cpp: In member function ‘virtual CTrajectoryMethod::Status CLsodaMethod2::step(const double&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod2.cpp:150:13: warning: unused variable ‘StartTime’ [-Wunused-variable] 150 | C_FLOAT64 StartTime = mTime; | ^~~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRadau5Method.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRadau5Method.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CRadau5Method.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CRadau5Method.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRadau5Method.cpp [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CRootFinder.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRootFinder.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRadau5Method.cpp:12: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRadau5Method.cpp:8: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRadau5Method.cpp:13: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CRungeKutta.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRungeKutta.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRungeKutta.cpp: In member function ‘void CRungeKutta::doOneStep()’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRungeKutta.cpp:431:10: warning: unused variable ‘s’ [-Wunused-variable] 431 | size_t s = mStage - 1; | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRungeKutta.cpp: In member function ‘void CRungeKutta::setInitialStepSize()’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRungeKutta.cpp:710:13: warning: unused variable ‘absT’ [-Wunused-variable] 710 | C_FLOAT64 absT = fabs(mTLeft); | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRungeKutta.cpp: In member function ‘void CRungeKutta::checkRoots()’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRungeKutta.cpp:802:15: warning: unused variable ‘pLeftRoots’ [-Wunused-variable] 802 | C_FLOAT64 * pLeftRoots = mRootValuesLeft; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CRungeKutta.cpp:805:15: warning: unused variable ‘pRightRoots’ [-Wunused-variable] 805 | C_FLOAT64 * pRightRoots = mRootValueRight; | ^~~~~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochDirectMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochDirectMethod.cpp [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochDirectMethod.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochDirectMethod.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochDirectMethod.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochDirectMethod.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochDirectMethod.cpp:50: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochDirectMethod.cpp:52: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochDirectMethod.cpp:53: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochMethod.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochMethod.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochMethod.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochMethod.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochMethod.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochMethod.cpp:50: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 23%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochNextReactionMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochNextReactionMethod.cpp [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CStochasticRungeKuttaRI5.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochasticRungeKuttaRI5.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochNextReactionMethod.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochMethod.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochNextReactionMethod.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochNextReactionMethod.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochasticRungeKuttaRI5.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochasticRungeKuttaRI5.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochasticRungeKuttaRI5.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochasticRungeKuttaRI5.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTauLeapMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTauLeapMethod.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CStochasticRungeKuttaRI5.h:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTauLeapMethod.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTauLeapMethod.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTauLeapMethod.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTauLeapMethod.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTauLeapMethod.cpp:49: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTauLeapMethod.cpp: In member function ‘bool CTauLeapMethod::updateSystem()’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTauLeapMethod.cpp:365:21: warning: unused variable ‘pKEnd’ [-Wunused-variable] 365 | const C_FLOAT64 * pKEnd = pK + mNumReactions; | ^~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTimeSeries.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.cpp [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajAdaptiveSA.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.h: In constructor ‘CTrajAdaptiveSA::CTrajAdaptiveSA(const CDataContainer*, const CTaskEnum::Method&, const CTaskEnum::Task&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.h:204:10: warning: ‘CTrajAdaptiveSA::mNumReactionSpecies’ will be initialized after [-Wreorder] 204 | size_t mNumReactionSpecies; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.h:189:20: warning: ‘unsigned int CTrajAdaptiveSA::mMaxSteps’ [-Wreorder] 189 | unsigned C_INT32 mMaxSteps; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.cpp:44:1: warning: when initialized here [-Wreorder] 44 | CTrajAdaptiveSA::CTrajAdaptiveSA(const CDataContainer * pParent, | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.h: In constructor ‘CTrajAdaptiveSA::CTrajAdaptiveSA(const CTrajAdaptiveSA&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.h:204:10: warning: ‘CTrajAdaptiveSA::mNumReactionSpecies’ will be initialized after [-Wreorder] 204 | size_t mNumReactionSpecies; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.h:189:20: warning: ‘unsigned int CTrajAdaptiveSA::mMaxSteps’ [-Wreorder] 189 | unsigned C_INT32 mMaxSteps; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajAdaptiveSA.cpp:70:1: warning: when initialized here [-Wreorder] 70 | CTrajAdaptiveSA::CTrajAdaptiveSA(const CTrajAdaptiveSA & src, | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.cpp: In member function ‘virtual bool CTimeSeries::compile(CObjectInterface::ContainerList)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.cpp:181:14: warning: enumeration value ‘Undefined’ not handled in switch [-Wswitch] 181 | switch (pObject->getSimulationType()) | ^ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.cpp [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryMethodDsaLsodar.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTauLeapMethod.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.cpp:49: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CLsodaMethod.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.h:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h: In constructor ‘CTrajectoryProblem::CTrajectoryProblem(const CTaskEnum::Task&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:209:10: warning: ‘CTrajectoryProblem::mpAutomaticStepSize’ will be initialized after [-Wreorder] 209 | bool * mpAutomaticStepSize; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:204:15: warning: ‘double* CTrajectoryProblem::mpDuration’ [-Wreorder] 204 | C_FLOAT64 * mpDuration; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.cpp:48:1: warning: when initialized here [-Wreorder] 48 | CTrajectoryProblem::CTrajectoryProblem(const CTaskEnum::Task & type, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h: In constructor ‘CTrajectoryProblem::CTrajectoryProblem(const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:209:10: warning: ‘CTrajectoryProblem::mpAutomaticStepSize’ will be initialized after [-Wreorder] 209 | bool * mpAutomaticStepSize; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:204:15: warning: ‘double* CTrajectoryProblem::mpDuration’ [-Wreorder] 204 | C_FLOAT64 * mpDuration; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.cpp:71:1: warning: when initialized here [-Wreorder] 71 | CTrajectoryProblem::CTrajectoryProblem(const CDataContainer * pParent): | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h: In constructor ‘CTrajectoryProblem::CTrajectoryProblem(const CTrajectoryProblem&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:209:10: warning: ‘CTrajectoryProblem::mpAutomaticStepSize’ will be initialized after [-Wreorder] 209 | bool * mpAutomaticStepSize; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.h:204:15: warning: ‘double* CTrajectoryProblem::mpDuration’ [-Wreorder] 204 | C_FLOAT64 * mpDuration; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryProblem.cpp:94:1: warning: when initialized here [-Wreorder] 94 | CTrajectoryProblem::CTrajectoryProblem(const CTrajectoryProblem & src, | ^~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/trajectory/CTrajectoryTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.cpp [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethod.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.h:41: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.cpp:193:84: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 193 | mpSteadyState = dynamic_cast(&pDataModel->getTaskList()->operator[]("Steady-State")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.cpp:49: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.cpp:56: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/locale:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.cpp:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.cpp:611:104: required from here /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: 611 | dynamic_cast(&const_cast(pDataModel)->getTaskList()->operator[]("Time-Course")); /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterBM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterBM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterBM.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterBM.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterBM.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterBM.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterBM.cpp:52: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterBM.cpp:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterBM.cpp:73:94: required from here /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: 73 | dynamic_cast(&const_cast(pDataModel)->getTaskList()->operator[]("Time-Course")); /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterC.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterC.cpp [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterC.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterC.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterC.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tss/CODEExporterXPPAUT.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterXPPAUT.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterC.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterC.cpp:52: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterC.cpp:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterXPPAUT.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporter.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterXPPAUT.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterXPPAUT.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterXPPAUT.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterXPPAUT.cpp:52: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterXPPAUT.cpp:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/tss/CODEExporterXPPAUT.cpp:71:94: required from here /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: 71 | dynamic_cast(&const_cast(pDataModel)->getTaskList()->operator[]("Time-Course")); /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CCSPMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:44: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.cpp: In member function ‘int CCSPMethod::isBlockDiagonal(int, int, const CMatrix&, const double&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.cpp:782:15: warning: variable ‘imax’ set but not used [-Wunused-but-set-variable] 782 | C_INT i, j, imax, jmax, imaxl, jmaxl; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.cpp:782:21: warning: variable ‘jmax’ set but not used [-Wunused-but-set-variable] 782 | C_INT i, j, imax, jmax, imaxl, jmaxl; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.cpp:782:27: warning: variable ‘imaxl’ set but not used [-Wunused-but-set-variable] 782 | C_INT i, j, imax, jmax, imaxl, jmaxl; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CCSPMethod.cpp:782:34: warning: variable ‘jmaxl’ set but not used [-Wunused-but-set-variable] 782 | C_INT i, j, imax, jmax, imaxl, jmaxl; | ^~~~~ [ 24%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.h:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp: In member function ‘virtual void CILDMMethod::step(const double&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp:108:9: warning: variable ‘flag_jacob’ set but not used [-Wunused-but-set-variable] 108 | C_INT flag_jacob; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp:223:9: warning: variable ‘flag_schur’ set but not used [-Wunused-but-set-variable] 223 | C_INT flag_schur; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp: In member function ‘void CILDMMethod::deuflhard(int&, int&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp:886:9: warning: variable ‘flag_deufl’ set but not used [-Wunused-but-set-variable] 886 | C_INT flag_deufl; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMMethod.cpp:1029:13: warning: variable ‘max1’ set but not used [-Wunused-but-set-variable] 1029 | C_FLOAT64 max1; | ^~~~ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CILDMModifiedMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:44: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.h:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function ‘virtual void CILDMModifiedMethod::step(const double&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp:117:9: warning: variable ‘flag_jacob’ set but not used [-Wunused-but-set-variable] 117 | C_INT flag_jacob; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp:179:9: warning: variable ‘flag_deufl’ set but not used [-Wunused-but-set-variable] 179 | C_INT flag_deufl; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp:224:9: warning: variable ‘flag_schur’ set but not used [-Wunused-but-set-variable] 224 | C_INT flag_schur; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function ‘void CILDMModifiedMethod::deuflhard_metab(int&, int&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp:508:9: warning: variable ‘flag_deufl’ set but not used [-Wunused-but-set-variable] 508 | C_INT flag_deufl; | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function ‘void CILDMModifiedMethod::newton_new(int*, int&, int&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp:620:25: warning: variable ‘flag_newton’ set but not used [-Wunused-but-set-variable] 620 | C_INT nrhs, ok, fast, flag_newton; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp: In member function ‘void CILDMModifiedMethod::newton_for_timestep(int, double&, int&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CILDMModifiedMethod.cpp:848:27: warning: variable ‘flag_newton’ set but not used [-Wunused-but-set-variable] 848 | C_INT i, iter, itermax, flag_newton; | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp: In member function ‘void CTSSAMethod::mat_anal_mod_space(int&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp:407:9: warning: variable ‘fast’ set but not used [-Wunused-but-set-variable] 407 | C_INT fast; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp: In member function ‘void CTSSAMethod::mat_anal_fast_space(int&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp:465:9: warning: variable ‘fast’ set but not used [-Wunused-but-set-variable] 465 | C_INT fast; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp: In member function ‘void CTSSAMethod::mat_anal_fast_space_thomas(int&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp:523:9: warning: variable ‘fast’ set but not used [-Wunused-but-set-variable] 523 | C_INT fast; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp: In member function ‘void CTSSAMethod::sylvester(int, int&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.cpp:1645:9: warning: variable ‘flag_sylvester’ set but not used [-Wunused-but-set-variable] 1645 | C_INT flag_sylvester; | ^~~~~~~~~~~~~~ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSAProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAProblem.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAProblem.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAProblem.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSATask.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAProblem.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/tssanalysis/CTSSATask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSATask.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAProblem.cpp:259:88: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 259 | dynamic_cast(&const_cast(pDataModel)->getTaskList()->operator[]("Time Scale Separation Analysis")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSATask.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSATask.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSATask.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CData.cpp [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CDataValue.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp: In member function ‘bool CDataValue::operator==(const CDataValue&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp:322:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 322 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp: In member function ‘bool CDataValue::operator!=(const CDataValue&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp:362:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 362 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp: In member function ‘void CDataValue::allocateData(const Type&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp:416:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 416 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp: In member function ‘void CDataValue::deleteData()’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp:466:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 466 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp: In member function ‘void CDataValue::assignData(const CDataValue&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp:510:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 510 | switch (rhs.mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp: In function ‘std::ostream& operator<<(std::ostream&, const CDataValue&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp:626:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 626 | switch (o.mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp: In function ‘std::istream& operator>>(std::istream&, CDataValue&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.cpp:707:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 707 | switch (i.mType) | ^ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoObjectInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoObjectInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CUndoObjectInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoObjectInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoObjectInterface.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:15: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘void CUndoData::CChangeSet::add(const CUndoData::ChangeInfo&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:67:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 67 | switch (Info.type) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In constructor ‘CUndoData::CUndoData(const Type&, const CUndoObjectInterface*, const size_t&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:207:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 207 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In constructor ‘CUndoData::CUndoData(const Type&, const CData&, const size_t&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:252:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 252 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::addProperty(const std::string&, const CDataValue&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:320:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 320 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::addProperty(const std::string&, const CDataValue&, const CDataValue&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:354:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 354 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::isSetProperty(const std::string&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:422:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 422 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::apply(const CDataModel&, CChangeSet&, const bool&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:555:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 555 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::undo(const CDataModel&, CChangeSet&, const bool&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:577:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 577 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘std::string CUndoData::getObjectDisplayName() const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:649:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 649 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:666:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 666 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘std::string CUndoData::getObjectType() const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:696:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 696 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘bool CUndoData::operator<(const CUndoData&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:715:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 715 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:753:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 753 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp: In member function ‘const CData& CUndoData::getData(const bool&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoData.cpp:977:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 977 | switch (mType) | ^ [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/undo/CUndoStack.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CUndoStack.cpp [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_yacc.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitParser_yacc.cpp [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser_lex.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitParser_lex.cpp [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CBaseUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CBaseUnit.cpp [ 25%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CBrent.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CBrent.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiException.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiException.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMessage.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMessage.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiMethod.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp: In member function ‘virtual CData CCopasiParameter::toData() const’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp:105:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 105 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp: In member function ‘virtual void CCopasiParameter::createUndoData(CUndoData&, const CUndoData::Type&, const CData&, const CCore::Framework&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp:185:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 185 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp: In function ‘std::ostream& operator<<(std::ostream&, const CCopasiParameter&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp:419:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 419 | switch (o.mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp: In member function ‘void CCopasiParameter::createValue()’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp:534:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 534 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp: In member function ‘void CCopasiParameter::assignValidValues(const void*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp:596:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 596 | switch (mType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp: In static member function ‘static void CCopasiParameter::allocateValue(const Type&, void*&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp:661:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 661 | switch (type) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp: In static member function ‘static void CCopasiParameter::assignValue(const Type&, void*&, const void*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp:713:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 713 | switch (type) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp: In static member function ‘static void CCopasiParameter::allocateValidValues(const Type&, void*&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.cpp:807:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 807 | switch (type) | ^ [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiParameterGroup.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.cpp: In member function ‘virtual void CCopasiParameterGroup::createUndoData(CUndoData&, const CUndoData::Type&, const CData&, const CCore::Framework&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.cpp:236:22: warning: unused variable ‘pParameter’ [-Wunused-variable] 236 | CCopasiParameter * pParameter; | ^~~~~~~~~~ [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiProblem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CCopasiTaskStatus.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTaskStatus.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CDependencyGraph.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CDependencyGraph.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h: In constructor ‘CCopasiTask::CCopasiTask()’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:522:24: warning: ‘CCopasiTask::mInitialState’ will be initialized after [-Wreorder] 522 | CVector< C_FLOAT64 > mInitialState; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.h:516:20: warning: ‘CMathContainer* CCopasiTask::mpContainer’ [-Wreorder] 516 | CMathContainer * mpContainer; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.cpp:232:1: warning: when initialized here [-Wreorder] 232 | CCopasiTask::CCopasiTask() | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.cpp: In member function ‘virtual void CCopasiTask::separate(const COutputInterface::Activity&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTask.cpp:654:12: warning: enumeration value ‘MONITORING’ not handled in switch [-Wswitch] 654 | switch (activity) | ^ [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CDirEntry.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CDirEntry.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CExpressionGenerator.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CExpressionGenerator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CExpressionGenerator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CExpressionGenerator.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CExpressionGenerator.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CExpressionGenerator.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CExpressionGenerator.cpp: In static member function ‘static std::string CExpressionGenerator::generate(Operation, const std::vector&, bool)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CExpressionGenerator.cpp:184:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for (int i = 1; i < objects.size(); ++i) | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CFlags.h:17, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CCore.h:83, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CObjectInterface.h:13, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CExpressionGenerator.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CExpressionGenerator.cpp:6: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CEnumAnnotation.h: In instantiation of ‘std::vector CEnumAnnotation::annotations() const [with Type = std::__cxx11::basic_string; Enum = CExpressionGenerator::Operation]’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CExpressionGenerator.cpp:71:36: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CExpressionGenerator.cpp:184:21: warning: 71 | return OperationNames.annotations(); /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CExpressionGenerator.cpp:184:21: warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CEnumAnnotation.h:114:42: warning: loop variable ‘a’ of type ‘const std::pair, CExpressionGenerator::Operation>&’ binds to a temporary constructed from type ‘const std::pair, CExpressionGenerator::Operation>’ [-Wrange-loop-construct] 114 | for (const std::pair< Type, Enum > & a : mMap) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CEnumAnnotation.h:114:42: note: use non-reference type ‘const std::pair, CExpressionGenerator::Operation>’ to make the copy explicit or ‘const std::pair, CExpressionGenerator::Operation>&’ to prevent copying [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CIndexedPriorityQueue.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CIndexedPriorityQueue.cpp [ 26%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLeastSquareSolution.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLeastSquareSolution.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CLeastSquareSolution.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CLeastSquareSolution.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLeastSquareSolution.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CLinkMatrix.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CMethodFactory.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CMethodFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CMethodFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CMethodFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:15, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:11: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:142:16: warning: ‘virtual void CLyapMethod::start(CVectorCore&)’ was hidden [-Woverloaded-virtual=] 142 | virtual void start(CVectorCore< C_FLOAT64 > & initialState); | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: by ‘virtual void CLyapWolfMethod::start()’ 203 | virtual void start(/*const CState * initialState*/); | ^~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:203:16: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethodCoranaWalk.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CBitPatternMethod.h:17, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:12: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp: In static member function ‘static CCopasiMethod* CMethodFactory::create(const CTaskEnum::Task&, const CTaskEnum::Method&, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘RandomSearchMaster’ not handled in switch [-Wswitch] 80 | switch (methodType) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘HybridGASA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘LSODA2’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘analyticsMethod’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:80:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp: In static member function ‘static CCopasiMethod* CMethodFactory::copy(const CCopasiMethod*, const CDataContainer*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘RandomSearchMaster’ not handled in switch [-Wswitch] 288 | switch (pSrc->getSubType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘HybridGASA’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘LSODA2’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘analyticsMethod’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CMethodFactory.cpp:288:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CParameterEstimationUtils.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CParameterEstimationUtils.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProblemFactory.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProblemFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CProblemFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CProblemFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProblemFactory.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CParameterEstimationUtils.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CParameterEstimationUtils.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CParameterEstimationUtils.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CParameterEstimationUtils.cpp:193:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: 193 | for (size_t i = 0; i < taskList.size(); i++) /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CParameterEstimationUtils.cpp: In static member function ‘static FittingItem* ResultParser::parseItem(const std::string&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CParameterEstimationUtils.cpp:481:16: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 481 | if (firstLeq == -1) | ~~~~~~~~~^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CParameterEstimationUtils.cpp:488:14: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 488 | if (square == -1) | ~~~~~~~^~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProblemFactory.cpp:14: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateProblem.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProblemFactory.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CProcessReport.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CReadConfig.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CReadConfig.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CSlider.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSlider.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSlider.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSlider.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSlider.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSlider.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CSparseMatrix.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSparseMatrix.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CTableCell.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CTableCell.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSparseMatrix.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSparseMatrix.h:148:19: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 148 | public std::iterator< std::forward_iterator_tag, C_FLOAT64, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/algorithm:60, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSparseMatrix.cpp:31: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CTaskEnum.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CTaskEnum.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CTaskFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CTaskFactory.cpp [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CTaskFactory.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitComponent.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitComponent.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinition.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ [ 27%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinition.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinition.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinition.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinition.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitDefinitionDB.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.cpp: In member function ‘virtual bool CUnitDefinitionDB::add(const CUnitDefinition&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.cpp:43:21: warning: variable ‘pCopy’ set but not used [-Wunused-but-set-variable] 43 | CUnitDefinition * pCopy = NULL; | ^~~~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitParser.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitParser.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitParser.h: In constructor ‘CUnitParserBase::CUnitParserBase()’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitParser.h:81:20: warning: ‘CUnitParserBase::mPosition’ will be initialized after [-Wreorder] 81 | unsigned C_INT32 mPosition; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitParser.h:80:10: warning: ‘CUnit* CUnitParserBase::mpUnit’ [-Wreorder] 80 | CUnit *mpUnit; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitParser.cpp:20:1: warning: when initialized here [-Wreorder] 20 | CUnitParserBase::CUnitParserBase(): | ^~~~~~~~~~~~~~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CUnitValidator.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitValidator.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CValidatedUnit.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitValidator.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitValidator.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitValidator.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CValidatedUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CValidatedUnit.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CValidity.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CValidity.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CVersion.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CVersion.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CValidity.cpp: In member function ‘void CValidity::add(const CIssue&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CValidity.cpp:277:10: warning: enumeration value ‘Success’ not handled in switch [-Wswitch] 277 | switch (issue.getSeverity()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CValidity.cpp: In member function ‘void CValidity::remove(const CIssue&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CValidity.cpp:316:10: warning: enumeration value ‘Success’ not handled in switch [-Wswitch] 316 | switch (issue.getSeverity()) | ^ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CluX.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CluX.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/Cmd5.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/Cmd5.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/Cmd5.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/Cmd5.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/Cmd5.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/CopasiTime.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CopasiTime.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/dgemm.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/dgemm.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/dgemm.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/dgemm.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/dgemm.cpp [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXML.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/utilities/utility.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/utility.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp:53: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp:55: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/utility.cpp: In function ‘ISODateTime[abi:cxx11](tm*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/utility.cpp:50:24: warning: ‘%.02d’ directive writing between 2 and 11 bytes into a region of size between 8 and 18 [-Wformat-overflow=] 50 | sprintf(str, "%d-%.02d-%.02dT%.02d:%.02d:%.02d", | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/utility.cpp:50:20: note: directive argument in the range [-2147483647, 2147483647] 50 | sprintf(str, "%d-%.02d-%.02dT%.02d:%.02d:%.02d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/utility.cpp:28: In function ‘*__sprintfieee128’, inlined from ‘ISODateTime[abi:cxx11](tm*)’ at /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/utility.cpp:50:14: /usr/include/bits/stdio2.h:30:34: note: ‘*__sprintf_chkieee128’ output between 17 and 72 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp:57: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp:67: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp:304:7: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: 304 | pdelete(mpTaskList); /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp: In member function ‘bool CCopasiXML::saveModel()’: /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXML.cpp:1042:28: warning: unused variable ‘pDataModel’ [-Wunused-variable] 1042 | CDataModel * pDataModel = Assignments.getObjectDataModel(); | ^~~~~~~~~~ [ 28%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/CCopasiXMLInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/CExpat.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CExpat.cpp [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/CFixLocalReactionParameters.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CFixLocalReactionParameters.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CFixLocalReactionParameters.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/AdditionalGraphicalObjectHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/AdditionalGraphicalObjectHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/AssignmentHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/AssignmentHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/AssignmentHandler.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/AssignmentHandler.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/BoundingBoxHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/BoundingBoxHandler.cpp [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/COPASIHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/COPASIHandler.cpp [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/COPASIHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/COPASIHandler.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/COPASIHandler.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/COPASIHandler.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/COPASIHandler.cpp:79:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: 79 | mpData->pTaskList->clear(); /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/COPASIHandler.cpp:181:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 181 | mpData->pFunctionList->getIndex("Objective Function") != C_INVALID_INDEX) /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLHandlerFactory.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp: In member function ‘CXMLHandler* CXMLHandlerFactory::createHandler(const CXMLHandler::Type&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘AFTER’ not handled in switch [-Wswitch] 137 | switch (type) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘BasePoint1’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘BasePoint2’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Body’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘CurveSegment’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘DelayExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘End’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Expression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Footer’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Header’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘InitialExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘NoiseExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Position’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘PriorityExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Problem’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Start’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Text’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘TriggerExpression’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLHandlerFactory.cpp:137:10: warning: enumeration value ‘Unit’ not handled in switch [-Wswitch] [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.cpp:64: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CXMLParserData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParserData.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParserData.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParserData.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CallParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CallParameterHandler.cpp [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ChannelSpecHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ChannelSpecHandler.cpp [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CharacterDataHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CharacterDataHandler.cpp [ 29%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ColorDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ColorDefinitionHandler.cpp [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CommentHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CommentHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ColorDefinitionHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CompartmentGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CompartmentGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CompartmentGlyphHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CompartmentGlyphHandler.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CompartmentHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CompartmentHandler.cpp [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ConstantHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ConstantHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CompartmentHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CompartmentHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ConstantHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ConstantHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CubicBezierHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CubicBezierHandler.cpp [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/CurveHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CurveHandler.cpp [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/DimensionsHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/DimensionsHandler.cpp [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/EllipseHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/EllipseHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLEllipse.h:16, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/EllipseHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/EventHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/EventHandler.cpp [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/FunctionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/FunctionHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/EventHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/EventHandler.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/FunctionHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/FunctionHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/FunctionHandler.cpp:96:42: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 96 | Index = mpData->pFunctionList->getIndex(Name); /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GUIHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/GUIHandler.cpp [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GradientStopHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/GradientStopHandler.cpp [ 30%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/GroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/GroupHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/GradientStopHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ImageHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ImageHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/GroupHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/InitialStateHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/InitialStateHandler.cpp [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/KineticLawHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/KineticLawHandler.cpp [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LayoutHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/LayoutHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/KineticLawHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/KineticLawHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/LayoutHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/LayoutHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/LineEndingHandler.cpp [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/LineSegmentHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/LineEndingHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/LinearGradientHandler.cpp [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ListOfCurveSegmentsHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/LinearGradientHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ListOfGradientDefinitionsHandler.cpp [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ListOfHandler.cpp [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ListOfLayoutsHandler.cpp [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MathMLHandler.cpp [ 31%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MetaboliteGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MetaboliteGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MetaboliteGlyphHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MetaboliteGlyphHandler.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MetaboliteHandler.cpp [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MetaboliteHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MetaboliteHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MetaboliteReferenceGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MethodHandler.cpp [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/MiriamAnnotationHandler.cpp [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelHandler.cpp [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelParameterGroupHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelParameterHandler.cpp [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelParameterSetHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelParameterSetHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelParameterSetHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelValueHandler.cpp [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModifierHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelValueHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModelValueHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModifierHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ModifierHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ObjectHandler.cpp [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ParameterDescriptionHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ParameterDescriptionHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ParameterDescriptionHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ParameterGroupHandler.cpp [ 32%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ParameterHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ParameterTextHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/PlotItemHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/PlotSpecificationHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/PointHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/PlotSpecificationHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/PolygonHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ProductHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLPolygon.h:16, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/PolygonHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ProductHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ProductHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RadialGradientHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReactionGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RadialGradientHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReactionGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReactionGlyphHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReactionGlyphHandler.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReactionHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RectangleHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReactionHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReactionHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRectangle.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RectangleHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RenderCurveElementHandler.cpp [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RenderCurveHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderCurve.h:17, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RenderCurveHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RenderInformationHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RenderTextHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RenderInformationHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLText.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/RenderTextHandler.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReportDefinitionHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReportSectionHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReportDefinitionHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/ReportTargetHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SBMLMapHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SBMLMapHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SBMLMapHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SBMLMapHandler.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SliderHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SourceParameterHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SourceParameterHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SourceParameterHandler.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/StateTemplateHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/StateTemplateVariableHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/StyleHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SubstrateHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/StyleHandler.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SubstrateHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/SubstrateHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/TableHandler.cpp [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/TaskHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/TaskHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/TaskHandler.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/TaskHandler.cpp:66:52: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 66 | mpData->pCurrentTask = CTaskFactory::create(Type, mpData->pTaskList); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 34%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/TextGlyphHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/TextGlyphHandler.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/CCopasiXMLInterface.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/TextGlyphHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/TextGlyphHandler.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/UNKNOWNHandler.cpp [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/UnitDefinitionHandler.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/CXMLParser.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/UnitDefinitionHandler.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/UnitDefinitionHandler.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/xml/parser/UnsupportedAnnotationHandler.cpp [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeFunction.h:49, from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/CSBMLExporter.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp:52: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp: In member function ‘std::string CSEDMLExporter::createScanTask()’: /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp:450:8: warning: unused variable ‘result’ [-Wunused-variable] 450 | bool result = exportNthScanItem(pProblem, numItems - 1, task); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp: In member function ‘std::string CSEDMLExporter::createSteadyStateTask()’: /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp:638:23: warning: unused variable ‘tProblem’ [-Wunused-variable] 638 | CTrajectoryProblem* tProblem = static_cast(pTask->getProblem()); | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp: In static member function ‘static std::string CSEDMLExporter::getParameterValueAsString(const CCopasiParameter*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp:760:49: warning: second operand of conditional expression has no effect [-Wunused-value] 760 | str << pParameter->getValue< bool >() ? "true" : "false"; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/CSEDMLExporter.cpp:760:58: warning: third operand of conditional expression has no effect [-Wunused-value] 760 | str << pParameter->getValue< bool >() ? "true" : "false"; | ^~~~~~~ [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:52: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp: In member function ‘void SEDMLImporter::importOutputs()’: /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:465:18: warning: unused variable ‘logX’ [-Wunused-variable] 465 | bool logX = false; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:466:18: warning: unused variable ‘logY’ [-Wunused-variable] 466 | bool logY = false; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:499:18: warning: unused variable ‘logX’ [-Wunused-variable] 499 | bool logX = false; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:500:18: warning: unused variable ‘logY’ [-Wunused-variable] 500 | bool logY = false; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:424:46: warning: unused variable ‘copasiMap’ [-Wunused-variable] 424 | std::map< const CDataObject *, SBase * > & copasiMap = pModel->getObjectDataModel()->getCopasi2SBMLMap(); | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLImporter.cpp:426:29: warning: unused variable ‘pReports’ [-Wunused-variable] 426 | CReportDefinitionVector * pReports = mpDataModel->getReportDefinitionList(); | ^~~~~~~~ [ 35%] Building CXX object copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fstack-protector-all -MD -MT copasi/CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o -MF CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o.d -o CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.cpp: In static member function ‘static const CDataObject* SEDMLUtils::resolveVariable(CModel*, const SedVariable*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.cpp:337:25: warning: unused variable ‘pReaction’ [-Wunused-variable] 337 | const CReaction * pReaction = dynamic_cast< const CReaction * >(obj); | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.cpp: In static member function ‘static int SEDMLUtils::getAlphaFromRgba(const std::string&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.cpp:665:7: warning: unused variable ‘offset’ [-Wunused-variable] 665 | int offset = rgba[0] == '#' ? 1 : 0; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.h: In constructor ‘VariableInfo::VariableInfo(const CDataObject*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.h:74:23: warning: ‘VariableInfo::mpObject’ will be initialized after [-Wreorder] 74 | const CDataObject * mpObject; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.h:72:8: warning: ‘bool VariableInfo::mIsValid’ [-Wreorder] 72 | bool mIsValid; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/sedml/SEDMLUtils.cpp:808:1: warning: when initialized here [-Wreorder] 808 | VariableInfo::VariableInfo(const CDataObject * pObject) | ^~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' [ 36%] Built target libCOPASISE-core /usr/bin/gmake -f copasi/CMakeFiles/libCOPASISE-static.dir/build.make copasi/CMakeFiles/libCOPASISE-static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' cd /builddir/build/BUILD/COPASI-Build-284 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi /builddir/build/BUILD/COPASI-Build-284/copasi/CMakeFiles/libCOPASISE-static.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/gmake -f copasi/CMakeFiles/libCOPASISE-static.dir/build.make copasi/CMakeFiles/libCOPASISE-static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' [ 36%] Linking CXX static library libCOPASISE.a cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/cmake -P CMakeFiles/libCOPASISE-static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/cmake -E cmake_link_script CMakeFiles/libCOPASISE-static.dir/link.txt --verbose=1 /usr/bin/ar 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"CMakeFiles/libCOPASISE-core.dir/xml/parser/LineEndingHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/LineSegmentHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/LinearGradientHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfCurveSegmentsHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfGradientDefinitionsHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ListOfLayoutsHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MathMLHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteGlyphHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MetaboliteReferenceGlyphHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MethodHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/MiriamAnnotationHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterGroupHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelParameterSetHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModelValueHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ModifierHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ObjectHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterDescriptionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterGroupHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ParameterTextHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotItemHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/PlotSpecificationHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/PointHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/PolygonHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ProductHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RadialGradientHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionGlyphHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReactionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RectangleHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveElementHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderCurveHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderInformationHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/RenderTextHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportDefinitionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportSectionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/ReportTargetHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/SBMLMapHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/SliderHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/SourceParameterHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/StateTemplateVariableHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/StyleHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/SubstrateHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/TableHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/TaskHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/TextGlyphHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/UNKNOWNHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/UnitDefinitionHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/xml/parser/UnsupportedAnnotationHandler.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sedml/CSEDMLExporter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLImporter.cpp.o" "CMakeFiles/libCOPASISE-core.dir/sedml/SEDMLUtils.cpp.o" /usr/bin/ranlib libCOPASISE.a gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' [ 36%] Built target libCOPASISE-static /usr/bin/gmake -f copasi/CMakeFiles/libCOPASIUI.dir/build.make copasi/CMakeFiles/libCOPASIUI.dir/depend /usr/bin/gmake -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' [ 36%] Swig Python source cd /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/../swig/ -I/builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/../../ -I/builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python -I/builddir/build/BUILD/COPASI-Build-284 -c++ -python -DLIBSBML_CPP_NAMESPACE_USE= -DLIBSBML_CPP_NAMESPACE_BEGIN= -DLIBSBML_CPP_NAMESPACE_END= -DLIBSEDML_CPP_NAMESPACE_USE= -DLIBSEDML_CPP_NAMESPACE_BEGIN= -DLIBSEDML_CPP_NAMESPACE_END= -DLIBSEDML_CPP_NAMESPACE_QUALIFIER= -DLIBCOMBINE_CPP_NAMESPACE_USE= -DLIBCOMBINE_CPP_NAMESPACE_BEGIN= -DLIBCOMBINE_CPP_NAMESPACE_END= -DLIBCOMBINE_CPP_NAMESPACE_QUALIFIER= -features autodoc,1 -o /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/python.i gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' [ 36%] Generating wizard/ui_wizard.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/wizard/ui_wizard.h /builddir/build/BUILD/COPASI-Build-284/copasi/wizard/wizard.ui [ 36%] Generating MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQCreatorDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQCreatorDM.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQMiriamWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQMiriamWidget.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQModifiedDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQModifiedDM.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQRDFTreeView.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQRDFTreeView.cpp_parameters [ 36%] Generating MIRIAMUI/moc_CQRDFTreeViewItem.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQRDFTreeViewItem.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQRDFTreeViewItem.h:0: Note: No relevant classes found. No output generated. [ 37%] Generating MIRIAMUI/moc_CQReferenceDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQReferenceDM.cpp_parameters [ 37%] Generating MIRIAMUI/ui_CQMiriamWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/ui_CQMiriamWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQMiriamWidget.ui [ 37%] Generating MIRIAMUI/ui_CQRDFTreeView.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/ui_CQRDFTreeView.h /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQRDFTreeView.ui [ 37%] Generating UI/moc_AboutDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_AboutDialog.cpp_parameters [ 37%] Generating UI/moc_CColorScale.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CColorScale.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CColorScale.h:0: Note: No relevant classes found. No output generated. [ 37%] Generating UI/moc_CCopasiPlot2YSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CCopasiPlot2YSelectionDialog.cpp_parameters [ 37%] Generating UI/moc_CCopasiPlotSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CCopasiPlotSelectionDialog.cpp_parameters [ 37%] Generating UI/moc_CCopasiSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CCopasiSelectionDialog.cpp_parameters [ 37%] Generating UI/moc_CCopasiSelectionWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CCopasiSelectionWidget.cpp_parameters [ 37%] Generating UI/moc_CLNAResultSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CLNAResultSubwidget.cpp_parameters [ 37%] Generating UI/moc_CLNAResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CLNAResultWidget.cpp_parameters [ 37%] Generating UI/moc_CMCAResultSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CMCAResultSubwidget.cpp_parameters [ 37%] Generating UI/moc_CMCAResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CMCAResultWidget.cpp_parameters [ 37%] Generating UI/moc_CProgressBar.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CProgressBar.cpp_parameters [ 38%] Generating UI/moc_CQAnalyticsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQAnalyticsWidget.cpp_parameters [ 38%] Generating UI/moc_CQArrayAnnotationsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQArrayAnnotationsWidget.cpp_parameters [ 38%] Generating UI/moc_CQArrayAnnotationsWidgetDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQArrayAnnotationsWidgetDM.cpp_parameters [ 38%] Generating UI/moc_CQBaseDataModel.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQBaseDataModel.cpp_parameters [ 38%] Generating UI/moc_CQBaseTreeDataModel.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQBaseTreeDataModel.cpp_parameters [ 38%] Generating UI/moc_CQBrowserPane.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQBrowserPane.cpp_parameters [ 38%] Generating UI/moc_CQBrowserPaneDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQBrowserPaneDM.cpp_parameters [ 38%] Generating UI/moc_CQCheckModelWindow.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCheckModelWindow.cpp_parameters [ 38%] Generating UI/moc_CQComboDelegate.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQComboDelegate.cpp_parameters [ 38%] Generating UI/moc_CQCompartment.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCompartment.cpp_parameters [ 38%] Generating UI/moc_CQCompartmentCopyOptions.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCompartmentCopyOptions.cpp_parameters [ 38%] Generating UI/moc_CQCompartmentDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCompartmentDM.cpp_parameters [ 38%] Generating UI/moc_CQCompartmentsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCompartmentsWidget.cpp_parameters [ 39%] Generating UI/moc_CQCopasiApplication.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCopasiApplication.cpp_parameters [ 39%] Generating UI/moc_CQCrossSectionTaskWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCrossSectionTaskWidget.cpp_parameters [ 39%] Generating UI/moc_CQDateTimeEditDelegate.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDateTimeEditDelegate.cpp_parameters [ 39%] Generating UI/moc_CQDependenciesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDependenciesWidget.cpp_parameters [ 39%] Generating UI/moc_CQDependencyDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDependencyDialog.cpp_parameters [ 39%] Generating UI/moc_CQDependencyWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDependencyWidget.cpp_parameters [ 39%] Generating UI/moc_CQDifferentialEquations.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDifferentialEquations.cpp_parameters [ 39%] Generating UI/moc_CQEFMListWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMListWidget.cpp_parameters [ 39%] Generating UI/moc_CQEFMNetReactionDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMNetReactionDM.cpp_parameters [ 39%] Generating UI/moc_CQEFMReactionDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMReactionDM.cpp_parameters [ 39%] Generating UI/moc_CQEFMResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMResultWidget.cpp_parameters [ 39%] Generating UI/moc_CQEFMSpeciesDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMSpeciesDM.cpp_parameters [ 39%] Generating UI/moc_CQEFMWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMWidget.cpp_parameters [ 39%] Generating UI/moc_CQEventDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEventDM.cpp_parameters [ 40%] Generating UI/moc_CQEventWidget1.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEventWidget1.cpp_parameters [ 40%] Generating UI/moc_CQEventsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEventsWidget.cpp_parameters [ 40%] Generating UI/moc_CQExpandModelData.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExpandModelData.cpp_parameters [ 40%] Generating UI/moc_CQExperimentData.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExperimentData.cpp_parameters [ 40%] Generating UI/moc_CQExperimentSelection.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExperimentSelection.cpp_parameters [ 40%] Generating UI/moc_CQExpressionMmlStackedWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExpressionMmlStackedWidget.cpp_parameters [ 40%] Generating UI/moc_CQExpressionWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExpressionWidget.cpp_parameters [ 40%] Generating UI/moc_CQFittingItemWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFittingItemWidget.cpp_parameters [ 40%] Generating UI/moc_CQFittingResult.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFittingResult.cpp_parameters [ 40%] Generating UI/moc_CQFittingResultTab1.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFittingResultTab1.cpp_parameters [ 40%] Generating UI/moc_CQFittingWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFittingWidget.cpp_parameters [ 40%] Generating UI/moc_CQFluxModeDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFluxModeDM.cpp_parameters [ 40%] Generating UI/moc_CQFunctionDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFunctionDM.cpp_parameters [ 41%] Generating UI/moc_CQFunctionsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFunctionsWidget.cpp_parameters [ 41%] Generating UI/moc_CQGlobalQuantitiesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQGlobalQuantitiesWidget.cpp_parameters [ 41%] Generating UI/moc_CQGlobalQuantityDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQGlobalQuantityDM.cpp_parameters [ 41%] Generating UI/moc_CQLNAWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLNAWidget.cpp_parameters [ 41%] Generating UI/moc_CQLayoutsDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLayoutsDM.cpp_parameters [ 41%] Generating UI/moc_CQLayoutsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLayoutsWidget.cpp_parameters [ 41%] Generating UI/moc_CQLyapResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLyapResultWidget.cpp_parameters [ 41%] Generating UI/moc_CQLyapWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLyapWidget.cpp_parameters [ 41%] Generating UI/moc_CQMCAWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMCAWidget.cpp_parameters [ 41%] Generating UI/moc_CQMathMatrixWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMathMatrixWidget.cpp_parameters [ 41%] Generating UI/moc_CQMatrixDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMatrixDialog.cpp_parameters [ 41%] Generating UI/moc_CQMergingData.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMergingData.cpp_parameters [ 41%] Generating UI/moc_CQMessageBox.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMessageBox.cpp_parameters [ 41%] Generating UI/moc_CQMmlScrollView.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMmlScrollView.cpp_parameters [ 42%] Generating UI/moc_CQModelValue.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQModelValue.cpp_parameters [ 42%] Generating UI/moc_CQModelWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQModelWidget.cpp_parameters [ 42%] Generating UI/moc_CQMoietiesTaskResult.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMoietiesTaskResult.cpp_parameters [ 42%] Generating UI/moc_CQMoietiesTaskWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMoietiesTaskWidget.cpp_parameters [ 42%] Generating UI/moc_CQMultipleSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMultipleSelectionDialog.cpp_parameters [ 42%] Generating UI/moc_CQNameSelectionDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQNameSelectionDialog.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:337: Warning 383: operator++ ignored [ 42%] Generating UI/moc_CQNotes.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQNotes.cpp_parameters [ 42%] Generating UI/moc_CQOptPopulation.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQOptPopulation.cpp_parameters [ 42%] Generating UI/moc_CQOptimizationResult.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQOptimizationResult.cpp_parameters [ 42%] Generating UI/moc_CQOptimizationWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQOptimizationWidget.cpp_parameters [ 42%] Generating UI/moc_CQOscillationTaskWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQOscillationTaskWidget.cpp_parameters [ 42%] Generating UI/moc_CQParameterEstimationResult.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterEstimationResult.cpp_parameters [ 42%] Generating UI/moc_CQParameterGroupDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterGroupDM.cpp_parameters [ 43%] Generating UI/moc_CQParameterGroupView.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterGroupView.cpp_parameters [ 43%] Generating UI/moc_CQParameterOverviewDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterOverviewDM.cpp_parameters [ 43%] Generating UI/moc_CQParameterOverviewWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterOverviewWidget.cpp_parameters [ 43%] Generating UI/moc_CQParameterResultItemModel.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterResultItemModel.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterResultItemModel.h:0: Note: No relevant classes found. No output generated. [ 43%] Generating UI/moc_CQParameterSetsDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterSetsDM.cpp_parameters [ 43%] Generating UI/moc_CQParameterSetsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterSetsWidget.cpp_parameters [ 43%] Generating UI/moc_CQPlotDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQPlotDM.cpp_parameters [ 43%] Generating UI/moc_CQPlotsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQPlotsWidget.cpp_parameters [ 43%] Generating UI/moc_CQPreferenceDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQPreferenceDialog.cpp_parameters [ 43%] Generating UI/moc_CQProgressDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQProgressDialog.cpp_parameters [ 43%] Generating UI/moc_CQProgressItem.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQProgressItem.cpp_parameters [ 43%] Generating UI/moc_CQProgressItemBar.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQProgressItemBar.cpp_parameters [ 43%] Generating UI/moc_CQProgressItemText.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQProgressItemText.cpp_parameters [ 44%] Generating UI/moc_CQPushButtonDelegate.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQPushButtonDelegate.cpp_parameters [ 44%] Generating UI/moc_CQReactionDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReactionDM.cpp_parameters [ 44%] Generating UI/moc_CQReactionsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReactionsWidget.cpp_parameters [ 44%] Generating UI/moc_CQReportDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportDM.cpp_parameters [ 44%] Generating UI/moc_CQReportDefinition.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportDefinition.cpp_parameters [ 44%] Generating UI/moc_CQReportDefinitionSelect.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportDefinitionSelect.cpp_parameters [ 44%] Generating UI/moc_CQReportListItem.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportListItem.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportListItem.h:0: Note: No relevant classes found. No output generated. [ 44%] Generating UI/moc_CQReportsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportsWidget.cpp_parameters [ 44%] Generating UI/moc_CQSBMLFileDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSBMLFileDialog.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSBMLFileDialog.h:0: Note: No relevant classes found. No output generated. [ 44%] Generating UI/moc_CQSEDMLFileDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSEDMLFileDialog.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSEDMLFileDialog.h:0: Note: No relevant classes found. No output generated. [ 44%] Generating UI/moc_CQSEDMLImportDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSEDMLImportDialog.cpp_parameters [ 44%] Generating UI/moc_CQScanWidgetParameterSet.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQScanWidgetParameterSet.cpp_parameters [ 44%] Generating UI/moc_CQScrolledDependenciesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQScrolledDependenciesWidget.cpp_parameters [ 44%] Generating UI/moc_CQSensResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSensResultWidget.cpp_parameters [ 45%] Generating UI/moc_CQSimpleSelectionTree.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSimpleSelectionTree.cpp_parameters [ 45%] Generating UI/moc_CQSortFilterProxyModel.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSortFilterProxyModel.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSortFilterProxyModel.h:0: Note: No relevant classes found. No output generated. [ 45%] Generating UI/moc_CQSpecieDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSpecieDM.cpp_parameters [ 45%] Generating UI/moc_CQSpeciesDetail.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSpeciesDetail.cpp_parameters [ 45%] Generating UI/moc_CQSpeciesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSpeciesWidget.cpp_parameters [ 45%] Generating UI/moc_CQSpinBoxDelegate.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSpinBoxDelegate.cpp_parameters [ 45%] Generating UI/moc_CQSplashWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSplashWidget.cpp_parameters [ 45%] Generating UI/moc_CQStartValueReset.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQStartValueReset.cpp_parameters [ 45%] Generating UI/moc_CQSteadyStateResult.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSteadyStateResult.cpp_parameters [ 45%] Generating UI/moc_CQTSSAResultSubWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTSSAResultSubWidget.cpp_parameters [ 45%] Generating UI/moc_CQTSSAResultWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTSSAResultWidget.cpp_parameters [ 45%] Generating UI/moc_CQTSSATimeScaleWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTSSATimeScaleWidget.cpp_parameters [ 45%] Generating UI/moc_CQTSSAWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTSSAWidget.cpp_parameters [ 46%] Generating UI/moc_CQTabWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTabWidget.cpp_parameters [ 46%] Generating UI/moc_CQTableView.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTableView.cpp_parameters [ 46%] Generating UI/moc_CQTableWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTableWidget.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTableWidget.h:0: Note: No relevant classes found. No output generated. [ 46%] Generating UI/moc_CQTaskBtnWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTaskBtnWidget.cpp_parameters [ 46%] Generating UI/moc_CQTaskHeaderWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTaskHeaderWidget.cpp_parameters [ 46%] Generating UI/moc_CQTaskMethodWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTaskMethodWidget.cpp_parameters [ 46%] Generating UI/moc_CQTaskThread.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTaskThread.cpp_parameters [ 46%] Generating UI/moc_CQTextDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTextDialog.cpp_parameters [ 46%] Generating UI/moc_CQThread.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQThread.cpp_parameters [ 46%] Generating UI/moc_CQTimeSensWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTimeSensWidget.cpp_parameters [ 46%] Generating UI/moc_CQTimeSeriesDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTimeSeriesDM.cpp_parameters [ 46%] Generating UI/moc_CQTimeSeriesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTimeSeriesWidget.cpp_parameters [ 46%] Generating UI/moc_CQTrajectoryWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTrajectoryWidget.cpp_parameters [ 46%] Generating UI/moc_CQUndoTester.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUndoTester.cpp_parameters [ 47%] Generating UI/moc_CQUnitDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUnitDM.cpp_parameters [ 47%] Generating UI/moc_CQUnitDetail.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUnitDetail.cpp_parameters [ 47%] Generating UI/moc_CQUnitsWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUnitsWidget.cpp_parameters [ 47%] Generating UI/moc_CQUpdateAvogadro.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUpdateAvogadro.cpp_parameters [ 47%] Generating UI/moc_CQUpdatesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUpdatesWidget.cpp_parameters [ 47%] Generating UI/moc_CQValidator.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQValidator.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidator.h:0: Note: No relevant classes found. No output generated. [ 47%] Generating UI/moc_CQValidatorUnit.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQValidatorUnit.cpp_parameters [ 47%] Generating UI/moc_CScanContainerWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanContainerWidget.cpp_parameters [ 47%] Generating UI/moc_CScanItemData.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanItemData.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanItemData.h:0: Note: No relevant classes found. No output generated. [ 47%] Generating UI/moc_CScanWidgetRandom.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanWidgetRandom.cpp_parameters [ 47%] Generating UI/moc_CScanWidgetRepeat.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanWidgetRepeat.cpp_parameters [ 47%] Generating UI/moc_CScanWidgetScan.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanWidgetScan.cpp_parameters [ 47%] Generating UI/moc_CScanWidgetTask.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanWidgetTask.cpp_parameters [ 48%] Generating UI/moc_CUpDownSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CUpDownSubwidget.cpp_parameters [ 48%] Generating UI/moc_CWindowInterface.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CWindowInterface.cpp_parameters [ 48%] Generating UI/moc_ChemEqValidator.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ChemEqValidator.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ChemEqValidator.h:0: Note: No relevant classes found. No output generated. [ 48%] Generating UI/moc_CopasiFileDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CopasiFileDialog.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CopasiFileDialog.h:0: Note: No relevant classes found. No output generated. [ 48%] Generating UI/moc_CopasiGuiTypes.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CopasiGuiTypes.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CopasiGuiTypes.h:0: Note: No relevant classes found. No output generated. [ 48%] Generating UI/moc_CopasiSlider.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CopasiSlider.cpp_parameters [ 48%] Generating UI/moc_DataModelGUI.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_DataModelGUI.cpp_parameters [ 48%] Generating UI/moc_DefaultplotDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_DefaultplotDialog.cpp_parameters [ 48%] Generating UI/moc_FunctionWidget1.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_FunctionWidget1.cpp_parameters [ 48%] Generating UI/moc_MyLineEdit.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_MyLineEdit.cpp_parameters [ 48%] Generating UI/moc_ObjectBrowserDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ObjectBrowserDialog.cpp_parameters [ 48%] Generating UI/moc_ObjectBrowserItem.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ObjectBrowserItem.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ObjectBrowserItem.h:0: Note: No relevant classes found. No output generated. [ 48%] Generating UI/moc_ObjectBrowserWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ObjectBrowserWidget.cpp_parameters [ 49%] Generating UI/moc_ReactionsWidget1.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ReactionsWidget1.cpp_parameters [ 49%] Generating UI/moc_ScanWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ScanWidget.cpp_parameters [ 49%] Generating UI/moc_SensWidgetComboBox.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SensWidgetComboBox.cpp_parameters [ 49%] Generating UI/moc_SensitivitiesWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SensitivitiesWidget.cpp_parameters [ 49%] Generating UI/moc_SliderDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SliderDialog.cpp_parameters [ 49%] Generating UI/moc_SliderSettingsDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SliderSettingsDialog.cpp_parameters [ 49%] Generating UI/moc_StateSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_StateSubwidget.cpp_parameters [ 49%] Generating UI/moc_SteadyStateWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SteadyStateWidget.cpp_parameters [ 49%] Generating UI/moc_TaskWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_TaskWidget.cpp_parameters [ 49%] Generating UI/moc_copasiWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_copasiWidget.cpp_parameters [ 49%] Generating UI/moc_copasiui3window.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_copasiui3window.cpp_parameters [ 49%] Generating UI/moc_listviews.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_listviews.cpp_parameters [ 49%] Generating UI/moc_objectdebug.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_objectdebug.cpp_parameters [ 49%] Generating UI/moc_parametertable.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_parametertable.cpp_parameters [ 50%] Generating UI/moc_qtUtilities.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/UI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_qtUtilities.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:0: Note: No relevant classes found. No output generated. [ 50%] Generating UI/ui_CEntityProvenanceDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CEntityProvenanceDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CEntityProvenanceDialog.ui [ 50%] Generating UI/ui_CLNAResultSubwidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CLNAResultSubwidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultSubwidget.ui [ 50%] Generating UI/ui_CMCAResultSubwidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CMCAResultSubwidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultSubwidget.ui [ 50%] Generating UI/ui_CProvenanceDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CProvenanceDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CProvenanceDialog.ui [ 50%] Generating UI/ui_CQAnalyticsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQAnalyticsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQAnalyticsWidget.ui [ 50%] Generating UI/ui_CQArrayAnnotationsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQArrayAnnotationsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.ui [ 50%] Generating UI/ui_CQBrowserPane.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQBrowserPane.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPane.ui [ 50%] Generating UI/ui_CQCheckModelWindow.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQCheckModelWindow.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCheckModelWindow.ui [ 50%] Generating UI/ui_CQCompartment.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQCompartment.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartment.ui [ 50%] Generating UI/ui_CQCompartmentCopyOptions.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQCompartmentCopyOptions.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentCopyOptions.ui [ 51%] Generating UI/ui_CQCompartmentsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQCompartmentsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentsWidget.ui [ 51%] Generating UI/ui_CQCrossSectionTaskWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQCrossSectionTaskWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCrossSectionTaskWidget.ui [ 51%] Generating UI/ui_CQDependenciesWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQDependenciesWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDependenciesWidget.ui [ 51%] Generating UI/ui_CQDependencyDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQDependencyDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDependencyDialog.ui [ 51%] Generating UI/ui_CQDependencyWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQDependencyWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDependencyWidget.ui [ 51%] Generating UI/ui_CQDifferentialEquations.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQDifferentialEquations.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDifferentialEquations.ui [ 51%] Generating UI/ui_CQEFMListWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQEFMListWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMListWidget.ui [ 51%] Generating UI/ui_CQEFMResultWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQEFMResultWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMResultWidget.ui [ 51%] Generating UI/ui_CQEFMWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQEFMWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMWidget.ui [ 51%] Generating UI/ui_CQEventWidget1.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQEventWidget1.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventWidget1.ui [ 51%] Generating UI/ui_CQEventsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQEventsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventsWidget.ui [ 51%] Generating UI/ui_CQExpandModelData.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpandModelData.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpandModelData.ui [ 51%] Generating UI/ui_CQExperimentData.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExperimentData.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.ui [ 51%] Generating UI/ui_CQExperimentSelection.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExperimentSelection.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentSelection.ui [ 52%] Generating UI/ui_CQExpressionMmlStackedWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.ui /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:1: Warning 401: Base class 'CVectorCore< CFunction const * >' undefined. ../swig/CVector.i:137: Warning 401: 'CVectorCore< CFunction const * >' must be defined before it is used as a base class. /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:1: Warning 401: Base class 'CVectorCore< CObjectInterface const * >' undefined. ../swig/CVector.i:139: Warning 401: 'CVectorCore< CObjectInterface const * >' must be defined before it is used as a base class. [ 52%] Generating UI/ui_CQFittingItemWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQFittingItemWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.ui [ 52%] Generating UI/ui_CQFittingResult.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQFittingResult.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.ui [ 52%] Generating UI/ui_CQFittingResultTab1.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQFittingResultTab1.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResultTab1.ui [ 52%] Generating UI/ui_CQFittingWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQFittingWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingWidget.ui [ 52%] Generating UI/ui_CQFunctionsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQFunctionsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionsWidget.ui [ 52%] Generating UI/ui_CQGlobalQuantitiesWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQGlobalQuantitiesWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantitiesWidget.ui [ 52%] Generating UI/ui_CQLNAWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQLNAWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLNAWidget.ui [ 52%] Generating UI/ui_CQLayoutsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQLayoutsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLayoutsWidget.ui [ 52%] Generating UI/ui_CQLyapResultWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQLyapResultWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapResultWidget.ui [ 52%] Generating UI/ui_CQLyapWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQLyapWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapWidget.ui /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.h:59: Warning 401: Nothing known about base class 'SBMLUnitSupport'. Ignored. [ 52%] Generating UI/ui_CQMCAWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMCAWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMCAWidget.ui [ 52%] Generating UI/ui_CQMathMatrixWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMathMatrixWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMathMatrixWidget.ui [ 53%] Generating UI/ui_CQMatrixDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMatrixDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMatrixDialog.ui [ 53%] Generating UI/ui_CQMergingData.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMergingData.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMergingData.ui [ 53%] Generating UI/ui_CQMessageBox.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMessageBox.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMessageBox.ui [ 53%] Generating UI/ui_CQModelValue.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQModelValue.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.ui [ 53%] Generating UI/ui_CQModelWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQModelWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelWidget.ui [ 53%] Generating UI/ui_CQMoietiesTaskResult.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMoietiesTaskResult.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMoietiesTaskResult.ui [ 53%] Generating UI/ui_CQMoietiesTaskWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMoietiesTaskWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMoietiesTaskWidget.ui [ 53%] Generating UI/ui_CQMultipleSelectionDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMultipleSelectionDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMultipleSelectionDialog.ui [ 53%] Generating UI/ui_CQNameSelectionDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQNameSelectionDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNameSelectionDialog.ui [ 53%] Generating UI/ui_CQNotes.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQNotes.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.ui [ 53%] Generating UI/ui_CQOptimizationResult.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQOptimizationResult.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.ui [ 53%] Generating UI/ui_CQOptimizationWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQOptimizationWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationWidget.ui [ 53%] Generating UI/ui_CQOscillationTaskWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQOscillationTaskWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOscillationTaskWidget.ui [ 54%] Generating UI/ui_CQParameterEstimationResult.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQParameterEstimationResult.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterEstimationResult.ui [ 54%] Generating UI/ui_CQParameterOverviewWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQParameterOverviewWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewWidget.ui [ 54%] Generating UI/ui_CQParameterSetWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQParameterSetWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetWidget.ui [ 54%] Generating UI/ui_CQParameterSetsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQParameterSetsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsWidget.ui [ 54%] Generating UI/ui_CQParametersWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQParametersWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParametersWidget.ui [ 54%] Generating UI/ui_CQPlotsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQPlotsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPlotsWidget.ui [ 54%] Generating UI/ui_CQPreferenceDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQPreferenceDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPreferenceDialog.ui [ 54%] Generating UI/ui_CQProgressDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQProgressDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQProgressDialog.ui [ 54%] Generating UI/ui_CQProgressItem.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQProgressItem.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQProgressItem.ui [ 54%] Generating UI/ui_CQProgressItemBar.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQProgressItemBar.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQProgressItemBar.ui [ 54%] Generating UI/ui_CQProgressItemText.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQProgressItemText.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQProgressItemText.ui [ 54%] Generating UI/ui_CQReactionsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQReactionsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionsWidget.ui [ 54%] Generating UI/ui_CQReportDefinition.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQReportDefinition.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportDefinition.ui [ 54%] Generating UI/ui_CQReportDefinitionSelect.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQReportDefinitionSelect.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportDefinitionSelect.ui [ 55%] Generating UI/ui_CQReportsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQReportsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportsWidget.ui [ 55%] Generating UI/ui_CQSEDMLImportDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSEDMLImportDialog.ui [ 55%] Generating UI/ui_CQScanWidgetParameterSet.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQScanWidgetParameterSet.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScanWidgetParameterSet.ui [ 55%] Generating UI/ui_CQScrolledDependenciesWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQScrolledDependenciesWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScrolledDependenciesWidget.ui [ 55%] Generating UI/ui_CQSensResultWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSensResultWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSensResultWidget.ui [ 55%] Generating UI/ui_CQSpeciesDetail.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSpeciesDetail.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesDetail.ui [ 55%] Generating UI/ui_CQSpeciesWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSpeciesWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesWidget.ui [ 55%] Generating UI/ui_CQSplashWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSplashWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSplashWidget.ui [ 55%] Generating UI/ui_CQStartValueReset.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQStartValueReset.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQStartValueReset.ui [ 55%] Generating UI/ui_CQSteadyStateResult.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSteadyStateResult.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSteadyStateResult.ui [ 55%] Generating UI/ui_CQTSSAResultSubWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTSSAResultSubWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultSubWidget.ui [ 55%] Generating UI/ui_CQTSSAWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTSSAWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAWidget.ui [ 55%] Generating UI/ui_CQTabWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTabWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTabWidget.ui [ 56%] Generating UI/ui_CQTaskBtnWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTaskBtnWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTaskBtnWidget.ui [ 56%] Generating UI/ui_CQTaskHeaderWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTaskHeaderWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTaskHeaderWidget.ui [ 56%] Generating UI/ui_CQTaskMethodWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTaskMethodWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTaskMethodWidget.ui [ 56%] Generating UI/ui_CQTextDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTextDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTextDialog.ui [ 56%] Generating UI/ui_CQTimeSensWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTimeSensWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSensWidget.ui [ 56%] Generating UI/ui_CQTimeSeriesWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTimeSeriesWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSeriesWidget.ui [ 56%] Generating UI/ui_CQTrajectoryWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTrajectoryWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTrajectoryWidget.ui [ 56%] Generating UI/ui_CQUndoHistoryDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQUndoHistoryDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUndoHistoryDialog.ui [ 56%] Generating UI/ui_CQUnitDetail.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQUnitDetail.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDetail.ui [ 56%] Generating UI/ui_CQUnitsWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQUnitsWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitsWidget.ui [ 56%] Generating UI/ui_CQUpdateAvogadro.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQUpdateAvogadro.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUpdateAvogadro.ui [ 56%] Generating UI/ui_CScanWidgetRandom.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CScanWidgetRandom.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanWidgetRandom.ui [ 56%] Generating UI/ui_CScanWidgetRepeat.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CScanWidgetRepeat.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanWidgetRepeat.ui [ 56%] Generating UI/ui_CScanWidgetScan.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CScanWidgetScan.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanWidgetScan.ui [ 57%] Generating UI/ui_CScanWidgetTask.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CScanWidgetTask.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanWidgetTask.ui [ 57%] Generating UI/ui_CUpDownSubwidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CUpDownSubwidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CUpDownSubwidget.ui [ 57%] Generating UI/ui_DefaultplotDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_DefaultplotDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DefaultplotDialog.ui [ 57%] Generating UI/ui_FunctionWidget1.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_FunctionWidget1.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.ui [ 57%] Generating UI/ui_ReactionsWidget1.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.ui [ 57%] Generating UI/ui_SensitivitiesWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_SensitivitiesWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SensitivitiesWidget.ui [ 57%] Generating UI/ui_SliderDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_SliderDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderDialog.ui [ 57%] Generating UI/ui_SliderSettingsDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_SliderSettingsDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderSettingsDialog.ui [ 57%] Generating UI/ui_StateSubwidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_StateSubwidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.ui [ 57%] Generating UI/ui_SteadyStateWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_SteadyStateWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SteadyStateWidget.ui [ 57%] Generating UI/ui_objectdebug.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_objectdebug.h /builddir/build/BUILD/COPASI-Build-284/copasi/UI/objectdebug.ui [ 57%] Generating barChart/moc_CQ3DBarsModifier.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/barChart && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/barChart/moc_CQ3DBarsModifier.cpp_parameters [ 57%] Generating layoutUI/moc_BezierCurve.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_BezierCurve.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/BezierCurve.h:0: Note: No relevant classes found. No output generated. [ 57%] Generating layoutUI/moc_CArrow.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CArrow.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CArrow.h:0: Note: No relevant classes found. No output generated. [ 57%] Generating layoutUI/moc_CCompartmentGraphNode.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CCompartmentGraphNode.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CCompartmentGraphNode.h:0: Note: No relevant classes found. No output generated. [ 57%] Generating layoutUI/moc_CDataEntity.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CDataEntity.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CDataEntity.h:0: Note: No relevant classes found. No output generated. [ 57%] Generating layoutUI/moc_CGraphCurve.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CGraphCurve.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CGraphCurve.h:0: Note: No relevant classes found. No output generated. [ 57%] Generating layoutUI/moc_CGraphNode.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CGraphNode.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CGraphNode.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating layoutUI/moc_CLabel.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CLabel.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CLabel.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating layoutUI/moc_CQAutolayoutWizard.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQAutolayoutWizard.cpp_parameters [ 58%] Generating layoutUI/moc_CQCurrentValueTable.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQCurrentValueTable.cpp_parameters [ 58%] Generating layoutUI/moc_CQLayoutThread.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQLayoutThread.cpp_parameters [ 58%] Generating layoutUI/moc_CQPlayerControlWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQPlayerControlWidget.cpp_parameters [ 58%] Generating layoutUI/moc_CQSpringLayoutParameterWindow.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQSpringLayoutParameterWindow.cpp_parameters [ 58%] Generating layoutUI/moc_CSimSummaryInfo.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CSimSummaryInfo.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CSimSummaryInfo.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating layoutUI/moc_CVisParameters.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CVisParameters.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CVisParameters.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_BandedGraphWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_BandedGraphWidget.cpp_parameters [ 58%] Generating plotUI/moc_C2DCurveData.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_C2DCurveData.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/C2DCurveData.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_C2DPlotCurve.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_C2DPlotCurve.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/C2DPlotCurve.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CBandedGraphData.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CBandedGraphData.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CBandedGraphData.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CHistoCurveData.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CHistoCurveData.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CHistoCurveData.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CLinearColorMap.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CLinearColorMap.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CLinearColorMap.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_COutputHandlerPlot.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_COutputHandlerPlot.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/COutputHandlerPlot.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CPlotInterface.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CPlotInterface.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CPlotInterface.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CPlotSpectogram.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CPlotSpectogram.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CPlotSpectogram.h:0: Note: No relevant classes found. No output generated. [ 58%] Generating plotUI/moc_CQAdvancedPlotSettings.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQAdvancedPlotSettings.cpp_parameters [ 58%] Generating plotUI/moc_CQCustomPlot.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQCustomPlot.cpp_parameters [ 58%] Generating plotUI/moc_CQDataVizPlot.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQDataVizPlot.cpp_parameters [ 59%] Generating plotUI/moc_CQExtender.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQExtender.cpp_parameters [ 59%] Generating plotUI/moc_CQMarchingSquares.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQMarchingSquares.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQMarchingSquares.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_CQPlotColors.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQPlotColors.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotColors.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_CQPlotEditWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQPlotEditWidget.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotEditWidget.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_CQPlotSubwidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQPlotSubwidget.cpp_parameters [ 59%] Generating plotUI/moc_CQSpectogramWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQSpectogramWidget.cpp_parameters [ 59%] Generating plotUI/moc_CQtChartsPlot.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQtChartsPlot.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQtChartsPlot.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_CQwtPlot.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQwtPlot.cpp_parameters [ 59%] Generating plotUI/moc_CSpectorgramData.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CSpectorgramData.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CSpectorgramData.h:0: Note: No relevant classes found. No output generated. [ 59%] Generating plotUI/moc_HistoWidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_HistoWidget.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.h:41: Warning 509: Overloaded method CDataValue::CDataValue(int const &) effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.h:37: Warning 509: as it is shadowed by CDataValue::CDataValue(CDataValue::Type const &). /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.h:37: Warning 509: Overloaded method CDataValue::CDataValue(CDataValue::Type const &) effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.h:41: Warning 509: as it is shadowed by CDataValue::CDataValue(int const &). /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.h:51: Warning 509: Overloaded method CDataValue::CDataValue(std::vector< CData,std::allocator< CData > > const &) effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.h:50: Warning 509: as it is shadowed by CDataValue::CDataValue(std::vector< CDataValue,std::allocator< CDataValue > > const &). /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.h:50: Warning 509: Overloaded method CDataValue::CDataValue(std::vector< CDataValue,std::allocator< CDataValue > > const &) effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/undo/CDataValue.h:51: Warning 509: as it is shadowed by CDataValue::CDataValue(std::vector< CData,std::allocator< CData > > const &). [ 59%] Generating plotUI/moc_curve2dwidget.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_curve2dwidget.cpp_parameters [ 59%] Generating plotUI/moc_plotwindow.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_plotwindow.cpp_parameters [ 59%] Generating plotUI/moc_scrollbar.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_scrollbar.cpp_parameters [ 59%] Generating plotUI/moc_scrollzoomer.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_scrollzoomer.cpp_parameters [ 59%] Generating plotUI/ui_BandedGraphWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/ui_BandedGraphWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/BandedGraphWidget.ui [ 59%] Generating plotUI/ui_CQAdvancedPlotSettings.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/ui_CQAdvancedPlotSettings.h /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQAdvancedPlotSettings.ui [ 59%] Generating plotUI/ui_CQPlotSubwidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/ui_CQPlotSubwidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotSubwidget.ui [ 59%] Generating plotUI/ui_CQSpectogramWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/ui_CQSpectogramWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQSpectogramWidget.ui [ 60%] Generating plotUI/ui_HistoWidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/ui_HistoWidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/HistoWidget.ui [ 60%] Generating plotUI/ui_PlotSubwidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/ui_PlotSubwidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/PlotSubwidget.ui [ 60%] Generating plotUI/ui_curve2dwidget.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/ui_curve2dwidget.h /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/curve2dwidget.ui [ 60%] Generating qlayout/moc_CQAnimationControls.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQAnimationControls.cpp_parameters [ 60%] Generating qlayout/moc_CQAnimationSettingsEditor.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQAnimationSettingsEditor.cpp_parameters [ 60%] Generating qlayout/moc_CQAnimationWindow.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQAnimationWindow.cpp_parameters [ 60%] Generating qlayout/moc_CQConnectionGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQConnectionGraphicsItem.cpp_parameters [ 60%] Generating qlayout/moc_CQCopasiAnimation.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQCopasiAnimation.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQCopasiAnimation.h:0: Note: No relevant classes found. No output generated. [ 60%] Generating qlayout/moc_CQCopasiEffect.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQCopasiEffect.cpp_parameters [ 60%] Generating qlayout/moc_CQCopasiGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQCopasiGraphicsItem.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQCopasiGraphicsItem.h:0: Note: No relevant classes found. No output generated. [ 60%] Generating qlayout/moc_CQEffectDescription.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQEffectDescription.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQEffectDescription.h:0: Note: No relevant classes found. No output generated. [ 60%] Generating qlayout/moc_CQEffectDescriptionEdit.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQEffectDescriptionEdit.cpp_parameters [ 60%] Generating qlayout/moc_CQElementProperties.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQElementProperties.cpp_parameters [ 61%] Generating qlayout/moc_CQLabelGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQLabelGraphicsItem.cpp_parameters [ 61%] Generating qlayout/moc_CQLayoutScene.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQLayoutScene.cpp_parameters [ 61%] Generating qlayout/moc_CQLayoutView.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQLayoutView.cpp_parameters [ 61%] Generating qlayout/moc_CQRenderConverter.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQRenderConverter.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQRenderConverter.h:0: Note: No relevant classes found. No output generated. [ 61%] Generating qlayout/moc_CQRoundedRect.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQRoundedRect.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQRoundedRect.h:0: Note: No relevant classes found. No output generated. [ 61%] Generating qlayout/moc_CQStyledGraphicsItem.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQStyledGraphicsItem.cpp_parameters [ 61%] Generating qlayout/moc_CQZoomableView.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQZoomableView.cpp_parameters [ 61%] Generating qlayout/ui_CQAnimationControls.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/ui_CQAnimationControls.h /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationControls.ui [ 62%] Generating qlayout/ui_CQAnimationSettingsEditor.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/ui_CQAnimationSettingsEditor.h /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationSettingsEditor.ui [ 62%] Generating qlayout/ui_CQAnimationWindow.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/ui_CQAnimationWindow.h /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationWindow.ui [ 62%] Generating qlayout/ui_CQEffectDescriptionEdit.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/ui_CQEffectDescriptionEdit.h /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQEffectDescriptionEdit.ui [ 62%] Generating qlayout/ui_CQElementProperties.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/ui_CQElementProperties.h /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQElementProperties.ui [ 62%] Generating qrc_copasi.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/rcc --name copasi --output /builddir/build/BUILD/COPASI-Build-284/copasi/qrc_copasi.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/resourcesUI/copasi.qrc [ 62%] Generating resourcesUI/moc_CQIconResource.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/resourcesUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/resourcesUI/moc_CQIconResource.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/resourcesUI/CQIconResource.h:0: Note: No relevant classes found. No output generated. [ 63%] Generating tex/moc_CMathMLToTeX.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/tex && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/tex/moc_CMathMLToTeX.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CMathMLToTeX.h:0: Note: No relevant classes found. No output generated. [ 63%] Generating tex/moc_CStructureParser.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/tex && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/tex/moc_CStructureParser.cpp_parameters /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.h:0: Note: No relevant classes found. No output generated. [ 63%] Generating undoUI/moc_CQUndoDM.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/moc_CQUndoDM.cpp_parameters [ 63%] Generating undoUI/moc_CQUndoDialog.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/moc_CQUndoDialog.cpp_parameters [ 63%] Generating undoUI/ui_CQUndoDialog.h cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/ui_CQUndoDialog.h /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDialog.ui [ 63%] Generating wizard/moc_wizard.cpp cd /builddir/build/BUILD/COPASI-Build-284/copasi/wizard && /usr/lib64/qt5/bin/moc @/builddir/build/BUILD/COPASI-Build-284/copasi/wizard/moc_wizard.cpp_parameters cd /builddir/build/BUILD/COPASI-Build-284 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi /builddir/build/BUILD/COPASI-Build-284/copasi/CMakeFiles/libCOPASIUI.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/gmake -f copasi/CMakeFiles/libCOPASIUI.dir/build.make copasi/CMakeFiles/libCOPASIUI.dir/build /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:245: Warning 509: Overloaded method CVectorCore< CDataObject * >::operator ()(size_t const &) const effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:237: Warning 509: as it is shadowed by CVectorCore< CDataObject * >::operator ()(size_t const &). gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:245: Warning 509: Overloaded method CVectorCore< CDataObject const * >::operator ()(size_t const &) const effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:237: Warning 509: as it is shadowed by CVectorCore< CDataObject const * >::operator ()(size_t const &). /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:245: Warning 509: Overloaded method CVectorCore< CFunction const * >::operator ()(size_t const &) const effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:237: Warning 509: as it is shadowed by CVectorCore< CFunction const * >::operator ()(size_t const &). /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:245: Warning 509: Overloaded method CVectorCore< CObjectInterface const * >::operator ()(size_t const &) const effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:237: Warning 509: as it is shadowed by CVectorCore< CObjectInterface const * >::operator ()(size_t const &). ../swig/CCopasiMessage.i:55: Warning 509: Overloaded method CCopasiMessage::CCopasiMessage(CCopasiMessage::Type,size_t) effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMessage.h:259: Warning 509: as it is shadowed by CCopasiMessage::CCopasiMessage(CCopasiMessage::Type,size_t,...). ../swig/CCopasiMessage.i:43: Warning 509: Overloaded method CCopasiMessage::CCopasiMessage(CCopasiMessage::Type,char const *) effectively ignored, /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMessage.h:250: Warning 509: as it is shadowed by CCopasiMessage::CCopasiMessage(CCopasiMessage::Type,char const *,...). /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMessage.h:250: Warning 509: Overloaded method CCopasiMessage::CCopasiMessage(CCopasiMessage::Type,char const *,...) effectively ignored, ../swig/CCopasiMessage.i:43: Warning 509: as it is shadowed by CCopasiMessage::CCopasiMessage(CCopasiMessage::Type,char const *). [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQCreatorDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQCreatorDM.cpp [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQMiriamWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQMiriamWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAM/CModelMIRIAMInfo.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQMiriamWidget.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQMiriamWidget.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQMiriamWidget.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 63%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQModifiedDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQModifiedDM.cpp [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQRDFTreeView.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQRDFTreeView.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQRDFTreeView.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQRDFTreeView.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ cd /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python" -P /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/../common/patch-wrapper.cmake -- Patching C++ wrapper cd /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python" -DVERSION=4.42.284 -P /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/patch-python.cmake -- Patching Python wrapper cd /builddir/build/BUILD/COPASI-Build-284 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/gmake -f copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build.make copasi/bindings/python/CMakeFiles/binding_python_lib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' [ 64%] Building CXX object copasi/bindings/python/CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -Dbinding_python_lib_EXPORTS -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python -I/usr/include/python3.12 -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/bindings/python/CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o -MF CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o.d -o CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQRDFTreeViewItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQRDFTreeViewItem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/local_common.cpp:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/local.cpp:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:4335: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/local_common.cpp:17: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/local_common.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/local_common.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/local_common.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43, from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/local_common.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/local_common.cpp:58: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/local_common.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/local_common.cpp:70: /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:151:11: note: by ‘int CMCAMethod::load(CReadConfig&)’ 151 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiMethod.h:135:16: warning: ‘virtual void CCopasiMethod::load(CReadConfig&, CReadConfig::Mode)’ was hidden [-Woverloaded-virtual=] 135 | virtual void load(CReadConfig & configBuffer, | ^~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiTaskTypes.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/downcast_common.cpp:46, from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/local.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: by ‘int CLNAMethod::load(CReadConfig&)’ 171 | C_INT32 load(CReadConfig & configBuffer); | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/downcast_common.cpp:241:54: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: 241 | else if (dynamic_cast(container)) /builddir/build/BUILD/COPASI-Build-284/copasi/lna/CLNAMethod.h:171:11: note: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CDataModel; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CDataModel; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/downcast_common.cpp:245:48: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 245 | else if (dynamic_cast(container)) /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/common/downcast_common.cpp:265:59: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 265 | else if (dynamic_cast(container)) /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvaluationTree; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvaluationTree; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘CDataObject* CVector_Sl_CDataObject_Sm__Sg__get(CVector*, int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:6902:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 6902 | if (i >= self->size()) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘const CDataObject* CVector_Sl_CDataObject_SS_const_Sm__Sg__get(CVector*, int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:6916:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 6916 | if (i >= self->size()) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘const CFunction* CVector_Sl_CFunction_SS_const_Sm__Sg__get(CVector*, int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:6924:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 6924 | if (i >= self->size()) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘const CObjectInterface* CVector_Sl_CObjectInterface_SS_const_Sm__Sg__get(CVector*, int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:6938:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 6938 | if (i >= self->size()) | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:10692:42: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:6938:13: warning: 10692 | return (CDataObject*)&((*self)[name]); /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:6938:13: warning: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:10769:42: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 10769 | return (CDataObject*)&((*self)[name]); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotItem; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotItem; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQReferenceDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/CQReferenceDM.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘std::vector CDataHandler_getNthRow(CDataHandler*, int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:14243:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14243 | if (index >= data.size()) | ~~~~~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:15013: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h: At global scope: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:15018: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:15028: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:15414: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:15467:42: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 15467 | return (CDataObject*)&((*self)[name]); /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:15517: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/CQ3DBarsModifier.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/barChart/CQ3DBarsModifier.cpp.o -MF CMakeFiles/libCOPASIUI.dir/barChart/CQ3DBarsModifier.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/barChart/CQ3DBarsModifier.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/barChart/CQ3DBarsModifier.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘PyObject* _wrap_delete_SBMLImporter(PyObject*, PyObject*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:198627:3: warning: deleting object of polymorphic class type ‘SBMLImporter’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 198627 | delete arg1; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘PyObject* _wrap_delete_CSBMLExporter(PyObject*, PyObject*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:199481:3: warning: deleting object of polymorphic class type ‘CSBMLExporter’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 199481 | delete arg1; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘PyObject* _wrap_delete_SEDMLImporter(PyObject*, PyObject*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:200350:3: warning: deleting object of polymorphic class type ‘SEDMLImporter’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] 200350 | delete arg1; | ^~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/BezierCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/BezierCurve.cpp [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CArrow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CArrow.cpp [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQAutolayoutWizard.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.cpp: In member function ‘void CQSelectionWizardPage::fillTree(const CModel&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.cpp:417:46: warning: enum constant in boolean context [-Wint-in-bool-context] 417 | pItem->setFlags(pItem->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); | ~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.cpp:417:66: warning: suggest parentheses around operand of ‘!’ or change ‘|’ to ‘||’ or ‘!’ to ‘~’ [-Wparentheses] 417 | pItem->setFlags(pItem->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.cpp:434:54: warning: enum constant in boolean context [-Wint-in-bool-context] 434 | pChild1->setFlags(pChild1->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); | ~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.cpp:434:74: warning: suggest parentheses around operand of ‘!’ or change ‘|’ to ‘||’ or ‘!’ to ‘~’ [-Wparentheses] 434 | pChild1->setFlags(pChild1->flags() & (!Qt::ItemIsUserCheckable | Qt::ItemIsEnabled)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart 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/usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CCompartmentGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CCompartmentGraphNode.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CCompartmentGraphNode.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CCompartmentGraphNode.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CDataEntity.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CDataEntity.cpp [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CGraphCurve.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CGraphCurve.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CGraphCurve.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CGraphCurve.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CGraphNode.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CGraphNode.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CGraphNode.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CLabel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CLabel.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CLabel.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CLabel.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQLayoutThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQLayoutThread.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQLayoutThread.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 64%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQPlayerControlWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQPlayerControlWidget.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CQSpringLayoutParameterWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQSpringLayoutParameterWindow.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CSimSummaryInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CSimSummaryInfo.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/CVisParameters.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CVisParameters.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationControls.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationControls.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationSettingsEditor.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationSettingsEditor.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQAnimationWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationWindow.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationWindow.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQCopasiAnimation.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationWindow.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationWindow.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationWindow.cpp:128:88: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 128 | const CEFMTask *task = dynamic_cast< const CEFMTask * >(&mpDataModel->getTaskList()->operator[]("Elementary Flux Modes")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationWindow.cpp: In member function ‘virtual void QCustomTimeCourseAnimation::getScales(std::vector&, int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQAnimationWindow.cpp:348:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 348 | if (index == C_INVALID_INDEX) [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQConnectionGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQConnectionGraphicsItem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQConnectionGraphicsItem.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQConnectionGraphicsItem.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderResolver.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQConnectionGraphicsItem.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiAnimation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQCopasiAnimation.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiEffect.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQCopasiEffect.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQCopasiGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQCopasiGraphicsItem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQCopasiGraphicsItem.cpp:17: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescription.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQEffectDescription.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQEffectDescriptionEdit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQEffectDescriptionEdit.cpp [ 65%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQElementProperties.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQElementProperties.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQElementProperties.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQElementProperties.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQElementProperties.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQElementProperties.cpp:11: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQElementProperties.cpp:12: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQLabelGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLabelGraphicsItem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLabelGraphicsItem.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderResolver.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLabelGraphicsItem.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutScene.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLayoutScene.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLayoutScene.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLCurve.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQConnectionGraphicsItem.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLayoutScene.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLayoutScene.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLayoutScene.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQLayoutView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLayoutView.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLayoutView.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQLayoutView.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQRenderConverter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQRenderConverter.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGroup.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLStyle.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQRenderConverter.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQRoundedRect.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQRoundedRect.cpp [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQStyledGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQStyledGraphicsItem.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQStyledGraphicsItem.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlobalRenderInformation.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderResolver.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQStyledGraphicsItem.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/CQZoomableView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/CQZoomableView.cpp [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/BandedGraphWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/BandedGraphWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/BandedGraphWidget.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/BandedGraphWidget.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/C2DCurveData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/C2DCurveData.cpp [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/C2DPlotCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/C2DPlotCurve.cpp [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CBandedGraphData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CBandedGraphData.cpp In function ‘SWIG_From_bool(bool)’, inlined from ‘_wrap_CCopasiTask_initializeRawWithOutputHandler’ at /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:184830:29: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:4787:25: warning: ‘success’ may be used uninitialized [-Wmaybe-uninitialized] 4787 | return PyBool_FromLong(value ? 1 : 0); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘_wrap_CCopasiTask_initializeRawWithOutputHandler’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:13961:14: note: ‘success’ was declared here 13961 | bool success; | ^~~~~~~ In function ‘SWIG_From_bool(bool)’, inlined from ‘_wrap_CCopasiTask_initializeRaw’ at /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:184792:29: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:4787:25: warning: ‘success’ may be used uninitialized [-Wmaybe-uninitialized] 4787 | return PyBool_FromLong(value ? 1 : 0); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘_wrap_CCopasiTask_initializeRaw’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:13941:14: note: ‘success’ was declared here 13941 | bool success; | ^~~~~~~ [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CHistoCurveData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CHistoCurveData.cpp [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CLinearColorMap.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CLinearColorMap.cpp [ 66%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/COutputHandlerPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/COutputHandlerPlot.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CPlotInterface.h:15, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/plotwindow.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/COutputHandlerPlot.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CPlotInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CPlotInterface.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CPlotInterface.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CPlotInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CPlotInterface.cpp In function ‘SWIG_From_bool(bool)’, inlined from ‘_wrap_CCopasiTask_processRaw’ at /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:184890:29: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:4787:25: warning: ‘success’ may be used uninitialized [-Wmaybe-uninitialized] 4787 | return PyBool_FromLong(value ? 1 : 0); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp: In function ‘_wrap_CCopasiTask_processRaw’: /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python/copasi_wrapper.cpp:14005:14: note: ‘success’ was declared here 14005 | bool success; | ^~~~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CPlotSpectogram.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CPlotSpectogram.cpp [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQAdvancedPlotSettings.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQAdvancedPlotSettings.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQAdvancedPlotSettings.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQAdvancedPlotSettings.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQAdvancedPlotSettings.cpp [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQCustomPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQCustomPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQCustomPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQCustomPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CPlotInterface.h:15, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp: In member function ‘virtual bool CQCustomPlot::initFromSpec(const CPlotSpecification*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:549:8: warning: variable ‘needLeft’ set but not used [-Wunused-but-set-variable] 549 | bool needLeft = false; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp: In member function ‘virtual void CQCustomPlot::wheelEvent(QWheelEvent*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1535:50: warning: ‘QPoint QWheelEvent::pos() const’ is deprecated: Use position() [-Wdeprecated-declarations] 1535 | QCPLayerable * element = layerableAt(event->pos(), true); | ~~~~~~~~~~^~ In file included from /usr/include/qt5/QtGui/QPaintEvent:1, from /usr/include/qcustomplot.h:56, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.h:24: /usr/include/qt5/QtGui/qevent.h:225:19: note: declared here 225 | inline QPoint pos() const { return p.toPoint(); } | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp: In member function ‘void CQCustomPlot::updateCurves(const size_t&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1632:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 1632 | if (curve_activity != activity) | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1755:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1755 | if (current_count != data_size && pY2) | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1759:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1759 | for (int i = current_count; i < data_size; ++i) | ~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1784:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1784 | if (current_count != data_size && helper) | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1802:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1802 | if (data_size != current_count) | ~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1815:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1815 | for (int count = 0; count < data_size; ++count) | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1853:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1853 | for (int count = 0; count < data_size; ++count) | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1894:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1894 | for (int l = 0; l < contours.size(); l++) | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1897:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1897 | for (int j = 0; j < contours[l].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp: In member function ‘void CQCustomPlot::resizeCurveData(const size_t&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:1978:48: warning: unused variable ‘data’ [-Wunused-variable] 1978 | std::vector< CVector< double > * > & data = mData[activity]; | ^~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp: In member function ‘void CQCustomPlot::initializeIndependentData(const CDataModel&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:2179:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2179 | for (int c = 0; c < numCols; ++c) | ~~^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:2170:14: warning: unused variable ‘independentObjects’ [-Wunused-variable] 2170 | auto & independentObjects = pExperiment->getIndependentObjects(); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp: In member function ‘void CQCustomPlot::updateSteadyStateInfo(int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQCustomPlot.cpp:2203:9: warning: unused variable ‘model’ [-Wunused-variable] 2203 | auto& model = *CRootContainer::getDatamodelList()->begin(); | ^~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQDataVizPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQDataVizPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQDataVizPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQDataVizPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:12: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:19: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CPlotInterface.h:15, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h: In constructor ‘CQDataVizPlot::CQDataVizPlot(QWidget*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h:370:8: warning: ‘CQDataVizPlot::mReplotFinished’ will be initialized after [-Wreorder] 370 | bool mReplotFinished; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h:167:8: warning: ‘bool CQDataVizPlot::m_isTouching’ [-Wreorder] 167 | bool m_isTouching; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:47:1: warning: when initialized here [-Wreorder] 47 | CQDataVizPlot::CQDataVizPlot(QWidget * parent) | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h: In constructor ‘CQDataVizPlot::CQDataVizPlot(const CPlotSpecification*, QWidget*, PlotMode)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h:370:8: warning: ‘CQDataVizPlot::mReplotFinished’ will be initialized after [-Wreorder] 370 | bool mReplotFinished; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h:167:8: warning: ‘bool CQDataVizPlot::m_isTouching’ [-Wreorder] 167 | bool m_isTouching; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:72:1: warning: when initialized here [-Wreorder] 72 | CQDataVizPlot::CQDataVizPlot(const CPlotSpecification * plotspec, QWidget * parent, PlotMode mode) | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp: In member function ‘virtual bool CQDataVizPlot::initFromSpec(const CPlotSpecification*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:267:8: warning: unused variable ‘needLeft’ [-Wunused-variable] 267 | bool needLeft = false; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:268:8: warning: unused variable ‘needRight’ [-Wunused-variable] 268 | bool needRight = false; | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp: In member function ‘virtual bool CQDataVizPlot::compile(CObjectInterface::ContainerList)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:372:12: warning: unused variable ‘isSpectogram’ [-Wunused-variable] 372 | bool isSpectogram = pItem->getType() == CPlotItem::spectogram; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp: In function ‘std::set resizeRange(std::set&, int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:581:20: warning: comparison of integer expressions of different signedness: ‘std::set::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 581 | if (range.size() < maxRange) | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp: In member function ‘void CQDataVizPlot::updateCurves(const size_t&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:634:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 634 | if (curve_activity != activity) | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:656:25: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 656 | if (data_size != data_count) | ~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:704:25: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 704 | if (data_size != data_count) | ~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:710:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 710 | for (auto i = 0; i < data_size; ++i) | ~~^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:641:12: warning: unused variable ‘curve_type’ [-Wunused-variable] 641 | auto curve_type = (*itCurves)->property("curve_type").toInt(); | ^~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:628:8: warning: unused variable ‘data_changed’ [-Wunused-variable] 628 | bool data_changed = false; | ^~~~~~~~~~~~ In file included from /usr/include/c++/14/utility:69, from /usr/include/qt5/QtCore/qglobal.h:47, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.h:20: /usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:739:41: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:628:8: warning: 739 | dataMap[std::make_pair(cur_x, cur_z)] = QVector3D(cur_x, cur_y, cur_z); /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:628:8: warning: | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_pair.h:929:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 929 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp: In member function ‘virtual bool CQDataVizPlot::saveData(const std::string&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:1024:26: warning: unused variable ‘scatter’ [-Wunused-variable] 1024 | QScatter3DSeries * scatter = qobject_cast< QScatter3DSeries * >(curve.second); | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQDataVizPlot.cpp:1019:8: warning: unused variable ‘FirstHistogram’ [-Wunused-variable] 1019 | bool FirstHistogram = true; | ^~~~~~~~~~~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQExtender.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQExtender.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQExtender.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQExtender.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQExtender.cpp [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQMarchingSquares.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQMarchingSquares.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQMarchingSquares.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQMarchingSquares.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQMarchingSquares.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQMarchingSquares.cpp: In member function ‘QPointF CQMarchingSquares::IsoCell::normalizedPointCCW(side)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQMarchingSquares.cpp:76:10: warning: enumeration value ‘NONE’ not handled in switch [-Wswitch] 76 | switch (cellSide) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQMarchingSquares.cpp: In member function ‘void CQMarchingSquares::isoSubpath(IsoCell*, int, int, levelPaths&, int&, int&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQMarchingSquares.cpp:547:10: warning: enumeration value ‘NONE’ not handled in switch [-Wswitch] 547 | switch (prevSide) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQMarchingSquares.cpp:584:14: warning: enumeration value ‘NONE’ not handled in switch [-Wswitch] 584 | switch (prevSide) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQMarchingSquares.cpp: In member function ‘QPointF CQMarchingSquares::IsoCell::normalizedPointCCW(side)’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQMarchingSquares.cpp:90:1: warning: control reaches end of non-void function [-Wreturn-type] 90 | } | ^ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotColors.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotColors.cpp [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotEditWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotEditWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotEditWidget.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQPlotSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotSubwidget.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotSubwidget.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetabNameInterface.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotSubwidget.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotSubwidget.cpp: In member function ‘void CQPlotSubwidget::addSpectrum()’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotSubwidget.cpp:592:14: warning: variable ‘imax’ set but not used [-Wunused-but-set-variable] 592 | size_t imax; | ^~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQSpectogramWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQSpectogramWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQSpectogramWidget.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQSpectogramWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQtChartsPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQtChartsPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQtChartsPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQtChartsPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQtChartsPlot.cpp [ 67%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQwtPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CQwtPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CQwtPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CQwtPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQwtPlot.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQwtPlot.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQwtPlot.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQwtPlot.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CPlotInterface.h:15, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQwtPlot.h:46: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQwtPlot.h:49: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/CSpectorgramData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CSpectorgramData.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CSpectorgramData.cpp: In member function ‘virtual double CSpectorgramData::value(double, double) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CSpectorgramData.cpp:342:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 342 | if (xpos == mSizeX) --xpos; | ~~~~~^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CSpectorgramData.cpp:344:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 344 | if (ypos == mSizeY) --ypos; | ~~~~~^~~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/HistoWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/HistoWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotItem.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/CQPlotSubwidget.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/HistoWidget.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/HistoWidget.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/HistoWidget.cpp: In member function ‘HistoWidget::buttonPressedX()’: /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/HistoWidget.cpp:90:66: warning: ‘nonnull’ argument ‘this’ compared to NULL [-Wnonnull-compare] 90 | while (!(pParent = dynamic_cast< CQPlotSubwidget * >(tmp)) && this) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/curve2dwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/curve2dwidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/curve2dwidget.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/curve2dwidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/plotwindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/plotwindow.cpp [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/scrollbar.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/scrollbar.cpp [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/scrollzoomer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/scrollzoomer.cpp [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o -MF CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/tex/CMathMLToTeX.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CMathMLToTeX.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CMathMLToTeX.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.h:62:3: warning: ‘template class QLinkedList’ is deprecated: Use std::list instead [-Wdeprecated-declarations] 62 | QLinkedList mListOfUncompletedTags; | ^~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qvarlengtharray.h:43, from /usr/include/qt5/QtCore/qmetatype.h:48, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/qiodevice.h:45, from /usr/include/qt5/QtCore/qtextstream.h:43, from /usr/include/qt5/QtXml/qxml.h:64, from /usr/include/qt5/QtXml/QXmlAttributes:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.h:26: /usr/include/qt5/QtCore/qcontainerfwd.h:51:26: note: declared here 51 | template class QLinkedList; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CMathMLToTeX.cpp: In static member function ‘static void CMathMLToTeX::mNode(QString&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CMathMLToTeX.cpp:183:20: warning: ‘QXmlSimpleReader’ is deprecated: Use QXmlStreamReader [-Wdeprecated-declarations] 183 | QXmlSimpleReader xmlReader; | ^~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:275:75: note: declared here 275 | class QT_DEPRECATED_VERSION_X(5, 15, "Use QXmlStreamReader") Q_XML_EXPORT QXmlSimpleReader | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CMathMLToTeX.cpp:187:19: warning: ‘QXmlInputSource’ is deprecated [-Wdeprecated-declarations] 187 | QXmlInputSource xmlSource; | ^~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:197:49: note: declared here 197 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlInputSource | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CMathMLToTeX.cpp: In static member function ‘static void CMathMLToTeX::mtableNode(QString&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CMathMLToTeX.cpp:210:20: warning: ‘QXmlSimpleReader’ is deprecated: Use QXmlStreamReader [-Wdeprecated-declarations] 210 | QXmlSimpleReader xmlReader; | ^~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:275:75: note: declared here 275 | class QT_DEPRECATED_VERSION_X(5, 15, "Use QXmlStreamReader") Q_XML_EXPORT QXmlSimpleReader | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CMathMLToTeX.cpp:214:19: warning: ‘QXmlInputSource’ is deprecated [-Wdeprecated-declarations] 214 | QXmlInputSource xmlSource; | ^~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:197:49: note: declared here 197 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlInputSource | ^~~~~~~~~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o -MF CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/tex/CStructureParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.h:62:3: warning: ‘template class QLinkedList’ is deprecated: Use std::list instead [-Wdeprecated-declarations] 62 | QLinkedList mListOfUncompletedTags; | ^~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qvarlengtharray.h:43, from /usr/include/qt5/QtCore/qmetatype.h:48, from /usr/include/qt5/QtCore/qobject.h:54, from /usr/include/qt5/QtCore/qiodevice.h:45, from /usr/include/qt5/QtCore/qtextstream.h:43, from /usr/include/qt5/QtXml/qxml.h:64, from /usr/include/qt5/QtXml/QXmlAttributes:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.h:26: /usr/include/qt5/QtCore/qcontainerfwd.h:51:26: note: declared here 51 | template class QLinkedList; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.cpp: In member function ‘virtual bool CStructureParser::startElement(const QString&, const QString&, const QString&, const QXmlAttributes&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.cpp:69:3: warning: ‘template class QLinkedList’ is deprecated: Use std::list instead [-Wdeprecated-declarations] 69 | QLinkedList< QString >::iterator itL; | ^~~~~~~~~~~ /usr/include/qt5/QtCore/qcontainerfwd.h:51:26: note: declared here 51 | template class QLinkedList; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.cpp: In member function ‘virtual bool CStructureParser::endElement(const QString&, const QString&, const QString&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/tex/CStructureParser.cpp:337:3: warning: ‘template class QLinkedList’ is deprecated: Use std::list instead [-Wdeprecated-declarations] 337 | QLinkedList< QString >::iterator itL; | ^~~~~~~~~~~ /usr/include/qt5/QtCore/qcontainerfwd.h:51:26: note: declared here 51 | template class QLinkedList; | ^~~~~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/wizard/wizard.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/wizard/wizard.cpp.o -MF CMakeFiles/libCOPASIUI.dir/wizard/wizard.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/wizard/wizard.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/wizard/wizard.cpp [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/AboutDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/AboutDialog.cpp [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CColorScale.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CColorScale.cpp [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlot2YSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlot2YSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlot2YSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlot2YSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiPlot2YSelectionDialog.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiPlot2YSelectionDialog.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiPlot2YSelectionDialog.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 68%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiPlotSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiPlotSelectionDialog.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiPlotSelectionDialog.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiPlotSelectionDialog.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiSelectionDialog.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiSelectionDialog.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiSelectionDialog.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiSelectionDialog.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CCopasiSelectionWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CCopasiSelectionWidget.cpp [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CLNAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CLNAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultSubwidget.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultSubwidget.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultSubwidget.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultSubwidget.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultSubwidget.cpp:227:58: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: 227 | dynamic_cast(& mpDataModel->getTaskList()->operator[]("Linear Noise Approximation")); /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CLNAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CLNAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultSubwidget.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultWidget.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CLNAResultWidget.cpp:57:57: required from here 57 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Linear Noise Approximation")); | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CMCAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CMCAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultSubwidget.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultSubwidget.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultSubwidget.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultSubwidget.cpp:298:57: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 298 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Metabolic Control Analysis")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CMCAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CMCAResultSubwidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultSubwidget.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultWidget.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultWidget.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CMCAResultWidget.cpp:69:57: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 69 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Metabolic Control Analysis")); /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CProgressBar.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CProgressBar.cpp [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQAnalyticsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQAnalyticsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQAnalyticsWidget.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQAnalyticsWidget.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.cpp [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQArrayAnnotationsWidgetDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidgetDM.cpp [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQBaseDataModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBaseDataModel.cpp [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBaseTreeDataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBaseTreeDataModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQBaseTreeDataModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQBaseTreeDataModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBaseTreeDataModel.cpp [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPane.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPane.cpp [ 69%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQBrowserPaneDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:16: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:457:91: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: 457 | updateNode(findNodeFromId(ListViews::WidgetType::SteadyState), mpCopasiDM->getTaskList()->operator[]("Steady-State").getCN()); /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp: In member function ‘void CQBrowserPaneDM::createStaticDM()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘NotFound’ not handled in switch [-Wswitch] 993 | switch (pNodeInfo->node) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘COPASI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Biochemical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Compartments’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘CompartmentDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Species’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘SpeciesDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Reactions’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ReactionDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘GlobalQuantities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘GlobalQuantityDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Events’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘EventDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterOverview’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterSets’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterSetDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Mathematical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘DifferentialEquations’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Matrices’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘UpdateOrder’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Diagrams’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘SteadyState’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘SteadyStateResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘StoichiometricAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ElementaryModes’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ElementaryModesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘MassConservation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘MassConservationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeCourse’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeCourseResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘MetabolicControlAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘MetabolicControlAnalysisResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘LyapunovExponents’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘LyapunovExponentsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeScaleSeparationAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeScaleSeparationAnalysisResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeCourseSensitivities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘TimeCourseSensitivitiesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘CrossSection’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘CrossSectionResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Analytics’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘AnalyticsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterScan’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Optimization’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘OptimizationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterEstimation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ParameterEstimationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Sensitivities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘SensitivitiesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘LinearNoiseApproximation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘LinearNoiseApproximationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Oscillation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘Plots’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘PlotDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ReportTemplates’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘ReportTemplateDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘FunctionDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘UnitDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQBrowserPaneDM.cpp:993:18: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCheckModelWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCheckModelWindow.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCheckModelWindow.cpp: In constructor ‘CQCheckModelWindow::CQCheckModelWindow(CopasiUI3Window*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCheckModelWindow.cpp:88:47: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 88 | mpSelection->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCheckModelWindow.cpp:21: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCheckModelWindow.cpp:88:47: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 88 | mpSelection->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQComboDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQComboDelegate.cpp [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartment.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartment.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQCompartment.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartment.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartment.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartment.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentCopyOptions.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentCopyOptions.cpp [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentDM.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentDM.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentDM.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCompartmentsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentsWidget.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentsWidget.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentsWidget.cpp: In member function ‘virtual void CQCompartmentsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartmentsWidget.cpp:258:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 258 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCopasiApplication.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCopasiApplication.cpp [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQCrossSectionTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCrossSectionTaskWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCrossSectionTaskWidget.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCrossSectionTaskWidget.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDateTimeEditDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDateTimeEditDelegate.cpp [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDependenciesWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDependenciesWidget.cpp:11: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:53: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDependencyDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDependencyDialog.cpp [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDependencyWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDependencyWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDependencyWidget.cpp:13: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 70%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQDifferentialEquations.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQDifferentialEquations.cpp [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMListWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMListWidget.cpp [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMNetReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMNetReactionDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMNetReactionDM.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMNetReactionDM.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMReactionDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMReactionDM.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMReactionDM.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMResultWidget.cpp [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMSpeciesDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMSpeciesDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMSpeciesDM.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMSpeciesDM.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMSpeciesDM.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMSpeciesDM.cpp: In member function ‘virtual QVariant CQEFMSpeciesDM::data(const QModelIndex&, int) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMSpeciesDM.cpp:91:109: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 91 | mpTask->getSpeciesChanges(*(mBeginModes + index.row()), **(mBeginSpecies + index.column() - 1)); | ^ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEFMWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMWidget.cpp [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEventDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventDM.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventDM.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventDM.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEventWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventWidget1.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQEventWidget1.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventWidget1.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventWidget1.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventWidget1.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 71%] Linking CXX shared library _COPASI.so cd /builddir/build/BUILD/COPASI-Build-284/copasi/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread -shared -Wl,-soname,_COPASI.so -o _COPASI.so CMakeFiles/binding_python_lib.dir/copasi_wrapper.cpp.o ../../libCOPASISE.a -lpython3.12 /lib64/libsedml.so /usr/lib64/libCombine.so.0.2.20 -lz -lZipper -lnuml -lxml2 -lbz2 -lz -lZipper -lnuml -lxml2 -lbz2 -lm -ldl -lexpat -lcrossguid2 -luuid /usr/lib64/libraptor.so /usr/lib64/libsbml.so /usr/lib64/libexpat.so -lflexiblas [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQEventsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventsWidget.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventsWidget.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventsWidget.cpp: In member function ‘virtual void CQEventsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventsWidget.cpp:250:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 250 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExpandModelData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpandModelData.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpandModelData.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpandModelData.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExperimentData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.cpp:57: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperiment.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CExperimentSet.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.cpp:47: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.cpp: In member function ‘void CQExperimentData::slotFileEdit()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.cpp:628:10: warning: unused variable ‘i’ [-Wunused-variable] 628 | size_t i = mpExperimentSetCopy->getExperimentCount() - 1; | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.cpp: In member function ‘bool CQExperimentData::saveTable(CExperiment*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentData.cpp:1537:8: warning: variable ‘FoundTime’ set but not used [-Wunused-but-set-variable] 1537 | bool FoundTime = false; | ^~~~~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExperimentSelection.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExperimentSelection.cpp [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExpressionMmlStackedWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 71%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQExpressionWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.cpp:51: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.cpp:50: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h: In constructor ‘CQExpressionWidget::CQExpressionWidget(QWidget*, const char*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:273:15: warning: ‘CQExpressionWidget::mCursor’ will be initialized after [-Wreorder] 273 | QTextCursor mCursor; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:272:28: warning: ‘CQExpressionHighlighter* CQExpressionWidget::mpExpressionHighlighter’ [-Wreorder] 272 | CQExpressionHighlighter *mpExpressionHighlighter; | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.cpp:218:1: warning: when initialized here [-Wreorder] 218 | CQExpressionWidget::CQExpressionWidget(QWidget * parent, const char * name) | ^~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingItemWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:47: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/ppc64le-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from /usr/include/qt5/QtCore/qbytearray.h:52, from /usr/include/qt5/QtCore/qvariant.h:44, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:25: In member function ‘std::__new_allocator::construct(COptItem**, COptItem* const&)void’, inlined from ‘std::allocator_traits >::construct(std::allocator&, COptItem**, COptItem* const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:531:17, inlined from ‘std::vector >::push_back(COptItem* const&)’ at /usr/include/c++/14/bits/stl_vector.h:1285:30, inlined from ‘CQFittingItemWidget::slotNew()’ at /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:1137:25: /usr/include/c++/14/bits/new_allocator.h:191:11: warning: ‘pItem’ may be used uninitialized [-Wmaybe-uninitialized] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp: In member function ‘CQFittingItemWidget::slotNew()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:1119:13: note: ‘pItem’ declared here 1119 | COptItem *pItem; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp: In member function ‘CQFittingItemWidget::slotParamEdit()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:452:29: warning: ‘pItem’ may be used uninitialized [-Wmaybe-uninitialized] 452 | pItem->setObjectCN(Selection[i]->getCN()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:434:21: note: ‘pItem’ declared here 434 | COptItem *pItem; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp: In member function ‘CQFittingItemWidget::slotCopy()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:952:15: warning: ‘pItem’ may be used uninitialized [-Wmaybe-uninitialized] 952 | setTableText((int) row, pItem); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingItemWidget.cpp:925:13: note: ‘pItem’ declared here 925 | COptItem *pItem; | ^~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQFittingResult.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:46: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:51: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp: In member function ‘void CQFittingResult::loadExperimentSetIntoTree(const CExperimentSet&, QTreeWidget*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:144:20: warning: variable ‘pItem’ set but not used [-Wunused-but-set-variable] 144 | QTreeWidgetItem* pItem = NULL; | ^~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:208:57: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:144:20: warning: 208 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Parameter Estimation")); /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:144:20: warning: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp: In member function ‘virtual bool CQFittingResult::enterProtected()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:275:32: warning: unused variable ‘Solutions’ [-Wunused-variable] 275 | const CVector< C_FLOAT64 > & Solutions = mpProblem->getSolutionVariables(); | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:276:32: warning: unused variable ‘StdDeviations’ [-Wunused-variable] 276 | const CVector< C_FLOAT64 > & StdDeviations = mpProblem->getVariableStdDeviations(); | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:277:32: warning: unused variable ‘Gradients’ [-Wunused-variable] 277 | const CVector< C_FLOAT64 > & Gradients = mpProblem->getVariableGradients(); | ^~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp: In member function ‘void CQFittingResult::loadLog(const COptMethod*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:525:28: warning: unused variable ‘subTextItem’ [-Wunused-variable] 525 | QTreeWidgetItem* subTextItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getSubtext())); | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResult.cpp:530:28: warning: unused variable ‘statusDetailItem’ [-Wunused-variable] 530 | QTreeWidgetItem* statusDetailItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getStatusDetails())); | ^~~~~~~~~~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingResultTab1.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResultTab1.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/parameterFitting/CFitProblem.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingResultTab1.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFittingWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingWidget.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingWidget.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingWidget.cpp:52: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingWidget.cpp: In member function ‘virtual bool CQFittingWidget::taskFinishedEvent()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFittingWidget.cpp:309:8: warning: unused variable ‘result’ [-Wunused-variable] 309 | bool result = TaskWidget::taskFinishedEvent(); | ^~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFluxModeDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFluxModeDM.cpp [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFunctionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionDM.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionDM.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionDM.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQFunctionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionsWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionsWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionsWidget.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionsWidget.cpp: In member function ‘virtual void CQFunctionsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQFunctionsWidget.cpp:243:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 243 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantitiesWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantitiesWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantitiesWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantitiesWidget.cpp: In member function ‘virtual void CQGlobalQuantitiesWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantitiesWidget.cpp:251:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 251 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/bits/locale_facets.h:1086:84: note: in a call to allocation function ‘operator new []’ declared here 1086 | * codecvt for that. [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQGlobalQuantityDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantityDM.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantityDM.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantityDM.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantityDM.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQGlobalQuantityDM.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLNAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLNAWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLNAWidget.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLNAWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLNAWidget.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLNAWidget.cpp:60:69: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 60 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Steady-State")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLayoutsDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLayoutsDM.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLayoutsDM.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLayoutsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLayoutsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLayoutsWidget.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLayoutsWidget.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLayoutsWidget.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLayoutsWidget.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 72%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLyapResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapResultWidget.cpp In member function ‘getSpeciesChanges’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapResultWidget.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapResultWidget.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapResultWidget.cpp:77:64: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 77 | mpTask = dynamic_cast(&mpDataModel->getTaskList()->operator[]("Lyapunov Exponents")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQLyapWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapWidget.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapWolfMethod.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapMethod.h:151, from /builddir/build/BUILD/COPASI-Build-284/copasi/lyap/CLyapTask.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQLyapWidget.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMCAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMCAWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMCAWidget.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CMCAMethod.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMCAWidget.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMCAWidget.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMCAWidget.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/steadystate/CSteadyStateTask.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMCAWidget.cpp:69:69: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 69 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Steady-State")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMathMatrixWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMathMatrixWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMathMatrixWidget.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMathMatrixWidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMathMatrixWidget.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMathMatrixWidget.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMathMatrixWidget.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMatrixDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMatrixDialog.cpp [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMergingData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMergingData.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMergingData.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMergingData.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMessageBox.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMessageBox.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMessageBox.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMessageBox.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMessageBox.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMessageBox.cpp: In member function ‘virtual int CQMessageBox::exec()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMessageBox.cpp:454:7: warning: unused variable ‘result’ [-Wunused-variable] 454 | int result = QDialog::exec(); | ^~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMmlScrollView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.cpp [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQModelValue.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQModelValue.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.h: In constructor ‘CQModelValue::CQModelValue(QWidget*, const char*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.h:65:15: warning: ‘CQModelValue::mObjectCNToCopy’ will be initialized after [-Wreorder] 65 | CCommonName mObjectCNToCopy; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.h:57:17: warning: ‘CModelValue* CQModelValue::mpModelValue’ [-Wreorder] 57 | CModelValue * mpModelValue; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.cpp:50:1: warning: when initialized here [-Wreorder] 50 | CQModelValue::CQModelValue(QWidget* parent, const char* name) | ^~~~~~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQModelWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQModelWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelWidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelWidget.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelWidget.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidatorUnit.h:17, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelWidget.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelWidget.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMoietiesTaskResult.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMoietiesTaskResult.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMoietiesTaskResult.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMoietiesTaskResult.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:19: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMoietiesTaskResult.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMoietiesTaskResult.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMoietiesTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMoietiesTaskWidget.cpp [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQMultipleSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMultipleSelectionDialog.cpp In member function ‘resize’, inlined from ‘copy’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:478:19, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:343:9, inlined from ‘intialize’ at /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:100:74: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new: In member function ‘intialize’: /usr/include/c++/14/new:133: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) [ 73%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQNameSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQNameSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQNameSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQNameSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNameSelectionDialog.cpp [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQNotes.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp:65: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp:64: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp: In member function ‘virtual QValidator::State CQValidatorXML::validate(QString&, int&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp:85:20: warning: ‘QXmlSimpleReader’ is deprecated: Use QXmlStreamReader [-Wdeprecated-declarations] 85 | QXmlSimpleReader Validator; | ^~~~~~~~~ In file included from /usr/include/qt5/QtXml/QXmlInputSource:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp:24: /usr/include/qt5/QtXml/qxml.h:275:75: note: declared here 275 | class QT_DEPRECATED_VERSION_X(5, 15, "Use QXmlStreamReader") Q_XML_EXPORT QXmlSimpleReader | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp:86:19: warning: ‘QXmlInputSource’ is deprecated [-Wdeprecated-declarations] 86 | QXmlInputSource Input; | ^~~~~ /usr/include/qt5/QtXml/qxml.h:197:49: note: declared here 197 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlInputSource | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp: In member function ‘virtual bool CQNotesContentHandler::startElement(const QString&, const QString&, const QString&, const QXmlAttributes&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp:153:30: warning: ‘QXmlDefaultHandler’ is deprecated [-Wdeprecated-declarations] 153 | return QXmlDefaultHandler::startElement(namespaceURI, localName, qName, atts); | ^~~~~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:407:49: note: declared here 407 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlDefaultHandler : public QXmlContentHandler, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp: In member function ‘virtual bool CQNotesContentHandler::endElement(const QString&, const QString&, const QString&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.cpp:163:30: warning: ‘QXmlDefaultHandler’ is deprecated [-Wdeprecated-declarations] 163 | return QXmlDefaultHandler::endElement(namespaceURI, localName, qName); | ^~~~~~~~~~ /usr/include/qt5/QtXml/qxml.h:407:49: note: declared here 407 | class QT_DEPRECATED_VERSION(5, 15) Q_XML_EXPORT QXmlDefaultHandler : public QXmlContentHandler, | ^~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQOptPopulation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptPopulationMethod.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp: In member function ‘virtual void CQEllipseItem::paint(QPainter*, const QStyleOptionGraphicsItem*, QWidget*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp:90:12: warning: unused variable ‘m11’ [-Wunused-variable] 90 | double m11 = painter->transform().m11(); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp: In member function ‘virtual void CQOptPopulation::output(const COutputInterface::Activity&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp:472:34: warning: comparison of integer expressions of different signedness: ‘std::vector*>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 472 | if (mPopulation.size() > mMaxIterations) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp: In function ‘QString vec_to_string(CVector*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp:541:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 541 | for (int i = 1; i < pVec->size(); ++i) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp: In member function ‘virtual void CQOptPopulation::update()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp:720:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 720 | i == mMinIndex, | ~~^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptPopulation.cpp:743:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 743 | i == mMinIndex, | ~~^~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.cpp:98:57: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: 98 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Optimization")); /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.cpp: In member function ‘void CQOptimizationResult::loadLog(const COptMethod*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.cpp:191:28: warning: unused variable ‘subTextItem’ [-Wunused-variable] 191 | QTreeWidgetItem* subTextItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getSubtext())); | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationResult.cpp:196:28: warning: unused variable ‘statusDetailItem’ [-Wunused-variable] 196 | QTreeWidgetItem* statusDetailItem = new QTreeWidgetItem(item, QStringList() << FROM_UTF8(it->getStatusDetails())); | ^~~~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQOptimizationWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQOptimizationWidget.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationWidget.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CMathContext.h:10, from /builddir/build/BUILD/COPASI-Build-284/copasi/OpenMP/CPointerMathContext.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptMethod.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationWidget.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQOscillationTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOscillationTaskWidget.cpp [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterEstimationResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterEstimationResult.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterEstimationResult.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterEstimationResult.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterEstimationResult.cpp: In member function ‘void CQParameterEstimationResult::applyToModelState()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterEstimationResult.cpp:309:15: warning: unused variable ‘current’ [-Wunused-variable] 309 | int current = model->rowCount(); | ^~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterGroupDM.cpp [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterGroupView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterGroupView.cpp [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterGroup.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewDM.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewDM.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewDM.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewDM.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewDM.cpp: In static member function ‘static QVariant CQParameterOverviewDM::diffData(const CModelParameter*, int)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewDM.cpp:373:16: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 373 | switch (pNode->getCompareResult()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewDM.cpp:400:16: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 400 | switch (pNode->getCompareResult()) | ^ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterOverviewWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewWidget.cpp:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewWidget.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterGroup.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterOverviewWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterResultItemModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterResultItemModel.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:44, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterResultItemModel.cpp:14: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterResultItemModel.cpp:13: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/optimization/COptProblem.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsDM.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsDM.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsDM.cpp: In member function ‘virtual QVariant CQParameterSetsDM::data(const QModelIndex&, int) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsDM.cpp:91:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 91 | if (mpListOfParameterSets->size() <= index.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQParameterSetsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsWidget.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsWidget.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsWidget.cpp: In member function ‘virtual void CQParameterSetsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQParameterSetsWidget.cpp:267:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 267 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 74%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQPlotDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPlotDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/plot/CPlotSpecification.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPlotDM.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here 31 | class COutputDefinitionVector : public CDataVectorN | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQPlotsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPlotsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPlotsWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPlotsWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPlotsWidget.cpp: In member function ‘virtual void CQPlotsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPlotsWidget.cpp:275:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 275 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQPreferenceDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPreferenceDialog.cpp [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQProgressDialog.cpp [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQProgressItem.cpp [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemBar.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQProgressItemBar.cpp [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQProgressItemText.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQProgressItemText.cpp [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQPushButtonDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPushButtonDelegate.cpp In file included from /usr/include/qt5/QtCore/qvariant.h:47, from /usr/include/qt5/QtCore/qabstractitemmodel.h:43, from /usr/include/qt5/QtCore/qabstractproxymodel.h:43, from /usr/include/qt5/QtCore/qsortfilterproxymodel.h:43, from /usr/include/qt5/QtCore/QSortFilterProxyModel:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPushButtonDelegate.cpp:13: In member function ‘QMapNode::lowerBound(QAbstractButton* const&)’, inlined from ‘QMapData::findNode(QAbstractButton* const&) const’ at /usr/include/qt5/QtCore/qmap.h:288:33, inlined from ‘QMap::operator[](QAbstractButton* const&)’ at /usr/include/qt5/QtCore/qmap.h:681:26, inlined from ‘CQPushButtonDelegate::createEditor(QWidget*, QStyleOptionViewItem const&, QModelIndex const&) const’ at /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPushButtonDelegate.cpp:98:25: /usr/include/qt5/QtCore/qmap.h:153:9: warning: ‘pEditor’ may be used uninitialized [-Wmaybe-uninitialized] 153 | if (!qMapLessThanKey(n->key, akey)) { | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPushButtonDelegate.cpp: In member function ‘CQPushButtonDelegate::createEditor(QWidget*, QStyleOptionViewItem const&, QModelIndex const&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQPushButtonDelegate.cpp:58:21: note: ‘pEditor’ was declared here 58 | QAbstractButton * pEditor; | ^~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionDM.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionDM.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionDM.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReactionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionsWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionsWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionsWidget.cpp: In constructor ‘CQReactionsWidget::CQReactionsWidget(QWidget*, const char*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionsWidget.cpp:81:22: warning: unused variable ‘pWindow’ [-Wunused-variable] 81 | CopasiUI3Window *pWindow = dynamic_cast(parent->parent()); | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionsWidget.cpp: In member function ‘virtual void CQReactionsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReactionsWidget.cpp:230:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 230 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportDM.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportDefinition.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportDefinition.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportDefinitionSelect.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportDefinitionSelect.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportDefinitionSelect.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5404:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5407:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5410:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) [ 75%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportListItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportListItem.cpp In member function ‘resize’, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:333:11, inlined from ‘removeAnalysisEvent’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:4483:77: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new: In member function ‘removeAnalysisEvent’: /usr/include/c++/14/new:133: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQReportsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportsWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportsWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportsWidget.cpp: In member function ‘virtual void CQReportsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQReportsWidget.cpp:229:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 229 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSBMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSBMLFileDialog.cpp [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSEDMLFileDialog.cpp [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLImportDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLImportDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLImportDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSEDMLImportDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSEDMLImportDialog.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSEDMLImportDialog.h:12, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSEDMLImportDialog.cpp:6: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h: In member function ‘void Ui_CQSEDMLImportDialog::setupUi(QDialog*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h:97:57: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 97 | cbmReportSelect->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h:18: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h:97:57: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 97 | cbmReportSelect->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQScanWidgetParameterSet.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQScanWidgetParameterSet.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQScanWidgetParameterSet.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQScanWidgetParameterSet.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScanWidgetParameterSet.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScanWidgetParameterSet.h:11, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScanWidgetParameterSet.cpp:6: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScanWidgetParameterSet.cpp:14: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameter.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterGroup.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelParameterSet.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScanWidgetParameterSet.cpp: In member function ‘virtual bool CQScanWidgetParameterSet::save(CCopasiParameterGroup*) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScanWidgetParameterSet.cpp:112:1: warning: control reaches end of non-void function [-Wreturn-type] 112 | } | ^ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQScrolledDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScrolledDependenciesWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQScrolledDependenciesWidget.cpp:6: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:53: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSensResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSensResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSensResultWidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSensResultWidget.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSensResultWidget.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSensResultWidget.cpp:85:57: required from here 85 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Sensitivities")); | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSimpleSelectionTree.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.cpp:20: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.h: In constructor ‘CQSimpleSelectionTree::CQSimpleSelectionTree(QWidget*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.h:116:40: warning: ‘CQSimpleSelectionTree::mpOutputVector’ will be initialized after [-Wreorder] 116 | std::vector< const CDataObject * > * mpOutputVector; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.h:112:26: warning: ‘CExpressionGenerator* CQSimpleSelectionTree::mpExpressionGenerator’ [-Wreorder] 112 | CExpressionGenerator * mpExpressionGenerator; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.cpp:44:1: warning: when initialized here [-Wreorder] 44 | CQSimpleSelectionTree::CQSimpleSelectionTree(QWidget *parent) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.cpp:427:64: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.cpp:44:1: warning: 427 | task = dynamic_cast(&pDataModel->getTaskList()->operator[]("Metabolic Control Analysis")); /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSimpleSelectionTree.cpp:44:1: warning: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSortFilterProxyModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSortFilterProxyModel.cpp [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSpecieDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpecieDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpecieDM.cpp:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpecieDM.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesDetail.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesDetail.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSpeciesDetail.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesDetail.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesDetail.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesDetail.cpp:28: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSpeciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesWidget.cpp: In member function ‘virtual void CQSpeciesWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesWidget.cpp:258:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 258 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSpinBoxDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpinBoxDelegate.cpp [ 76%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSplashWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSplashWidget.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQStartValueReset.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQStartValueReset.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQSteadyStateResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSteadyStateResult.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_StateSubwidget.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSteadyStateResult.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSteadyStateResult.h:16, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSteadyStateResult.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSteadyStateResult.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSteadyStateResult.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSteadyStateResult.cpp:80:65: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: 80 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Steady-State")); /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultSubWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultSubWidget.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.cpp: In member function ‘printResult’: /builddir/build/BUILD/COPASI-Build-284/copasi/elementaryFluxModes/CEFMProblem.cpp:95: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 95 | void CEFMProblem::printResult(std::ostream * ostream) const In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTSSAResultSubWidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultSubWidget.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultSubWidget.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultSubWidget.cpp:36: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptions.cpp: In function ‘init’: /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptions.cpp:73:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 73 | std::string * Utf8 = new std::string[argc]; | ^ /usr/include/c++/14/new:133: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultSubWidget.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultSubWidget.cpp:87:58: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: 87 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Time Scale Separation Analysis")); /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTSSAResultSubWidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultSubWidget.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultWidget.cpp:82:57: required from here 82 | dynamic_cast(&pDataModel->getTaskList()->operator[]("Time Scale Separation Analysis")); | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSATimeScaleWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSATimeScaleWidget.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTSSAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQTSSAResultSubWidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAResultSubWidget.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAWidget.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAWidget.cpp:224:58: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 224 | dynamic_cast(&mpDataModel->getTaskList()->operator[]("Time Scale Separation Analysis")); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAWidget.cpp: In member function ‘CQTSSAWidget::runTask()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAWidget.cpp:231:30: warning: ‘this’ pointer is null [-Wnonnull] 231 | mpTSSMethod->emptyVectors(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSATask.h:38, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTSSAWidget.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/tssanalysis/CTSSAMethod.h:157:8: note: in a call to non-static member function ‘CTSSAMethod::emptyVectors()’ 157 | void emptyVectors(); | ^~~~~~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTabWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTabWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTabWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTabWidget.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTabWidget.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTabWidget.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:32: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTableView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTableView.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTableWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTableWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTableWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTableWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTableWidget.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskBtnWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTaskBtnWidget.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskHeaderWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTaskHeaderWidget.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskMethodWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTaskMethodWidget.cpp [ 77%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTaskThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTaskThread.cpp [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTextDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTextDialog.cpp [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQThread.cpp [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSensWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSensWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTimeSensWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTimeSensWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSensWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSensWidget.cpp:18: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSensWidget.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensProblem.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSensWidget.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/timesens/CTimeSensTask.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSensWidget.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSeriesDM.cpp [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTimeSeriesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSeriesWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/crosssection/CCrossSectionTask.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTimeSeriesWidget.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQTrajectoryWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTrajectoryWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTrajectoryWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTrajectoryWidget.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQTrajectoryWidget.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUndoTester.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUndoTester.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiTypes.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUndoTester.cpp:15: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:53: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiTaskTypes.h:99, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiTypes.h:25: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CopasiGuiTypes.h:169, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUndoTester.cpp:17: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ChemEqValidator.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CopasiGuiTypes.h:20: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUndoTester.cpp: In member function ‘void CQUndoTester::testModelDetail()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUndoTester.cpp:163:11: warning: unused variable ‘pModel’ [-Wunused-variable] 163 | CModel* pModel = (*CRootContainer::getDatamodelList())[0].getModel(); | ^~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUnitDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDM.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDM.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDM.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDM.cpp:30: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitDetail.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitDetail.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUnitDetail.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUnitDetail.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDetail.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinition.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDetail.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDetail.cpp:16: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDetail.cpp:21: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitDetail.cpp:26: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUnitsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUnitsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUnitsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitsWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitsWidget.cpp:24: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitsWidget.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitsWidget.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitsWidget.cpp: In member function ‘virtual void CQUnitsWidget::slotDoubleClicked(QModelIndex)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUnitsWidget.cpp:245:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | index.row() < pVector->size()) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUpdateAvogadro.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUpdateAvogadro.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUpdateAvogadro.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUpdateAvogadro.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUpdateAvogadro.cpp [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQUpdatesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUpdatesWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUpdatesWidget.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUpdatesWidget.cpp:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQUpdatesWidget.cpp:35: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 78%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQValidator.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQValidator.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQValidator.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQValidator.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidator.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CQValidatorUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidatorUnit.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanContainerWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanContainerWidget.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanItemData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanItemData.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRandom.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanWidgetRandom.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetRepeat.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanWidgetRepeat.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetScan.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanWidgetScan.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CScanWidgetTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CScanWidgetTask.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CUpDownSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CUpDownSubwidget.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CWindowInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CWindowInterface.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CopasiFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CopasiFileDialog.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/CopasiSlider.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CopasiSlider.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/DataModelGUI.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:58: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:79:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 79 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/bits/specfun.h:43, from /usr/include/c++/14/cmath:3898, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiTree.h:164:17: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 164 | public std::iterator< std::forward_iterator_tag, _Node, ptrdiff_t > | ^~~~~~~~ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:70: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:20, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLineEnding.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLRenderInformationBase.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLLocalRenderInformation.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLayout.h:36: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLTransformation2D.h:100:16: warning: ‘virtual void CLTransformation2D::addSBMLAttributes(Transformation2D*) const’ was hidden [-Woverloaded-virtual=] 100 | virtual void addSBMLAttributes(Transformation2D* pTransformation) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: note: by ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ 94 | virtual void addSBMLAttributes(GraphicalPrimitive1D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive1D.h:94:16: warning: ‘virtual void CLGraphicalPrimitive1D::addSBMLAttributes(GraphicalPrimitive1D*) const’ was hidden [-Woverloaded-virtual=] /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: by ‘virtual void CLGraphicalPrimitive2D::addSBMLAttributes(GraphicalPrimitive2D*) const’ 83 | virtual void addSBMLAttributes(GraphicalPrimitive2D* pPrimitive) const; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:36:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: 36 | class CListOfLayouts : public CDataVectorN< CLayout > /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalPrimitive2D.h:83:17: note: | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CLayout; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CLayout; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:263:31: warning: ‘virtual const std::string& CDataObject::getKey() const’ was hidden [-Woverloaded-virtual=] 263 | virtual const std::string & getKey() const; | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:71: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CListOfLayouts.h:49:22: note: by ‘const std::string& CListOfLayouts::getKey()’ 49 | const std::string& getKey(); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:29: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.h: In constructor ‘DataModelGUI::DataModelGUI(QObject*, CDataModel*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.h:183:24: warning: ‘DataModelGUI::mpOutputHandlerPlot’ will be initialized after [-Wreorder] 183 | COutputHandlerPlot * mpOutputHandlerPlot; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.h:182:16: warning: ‘CDataModel* DataModelGUI::mpDataModel’ [-Wreorder] 182 | CDataModel * mpDataModel; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:96:1: warning: when initialized here [-Wreorder] 96 | DataModelGUI::DataModelGUI(QObject * parent, CDataModel * pDataModel): | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp: In member function ‘void DataModelGUI::notifyChanges(const CUndoData::CChangeSet&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:819:18: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 819 | switch (it->type) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp: In member function ‘void DataModelGUI::addRecentFile(const std::string&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:952:10: warning: enumeration value ‘OMEX’ not handled in switch [-Wswitch] 952 | switch (mpDataModel->getContentType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DataModelGUI.cpp:952:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/DefaultplotDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/DefaultplotDialog.cpp [ 79%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/FunctionWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_FunctionWidget1.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.cpp: In member function ‘bool FunctionWidget1::loadParameterTable()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.cpp:152:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 152 | switch (params[i]->getUsage()) | ^ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/MyLineEdit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/MyLineEdit.cpp [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ObjectBrowserDialog.cpp [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ObjectBrowserItem.cpp [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ObjectBrowserWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ObjectBrowserWidget.cpp [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ReactionsWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:19: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.cpp:53: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.cpp:54: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.cpp: In member function ‘void ReactionsWidget1::FillWidgetFromRI()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.cpp:406:35: warning: ‘QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 406 | Compartments.insertMulti(Name.toLower(), Name); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qvariant.h:47, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:16: /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.cpp:421:35: warning: ‘QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]’ is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 421 | Compartments.insertMulti(Name.toLower(), Name); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/ScanWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ScanWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ScanWidget.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ScanWidget.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SensWidgetComboBox.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SensWidgetComboBox.cpp [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SensitivitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SensitivitiesWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameterGroup.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiProblem.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SensitivitiesWidget.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SensitivitiesWidget.cpp:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SensitivitiesWidget.cpp:45: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/sensitivities/CSensProblem.h:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SliderDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderDialog.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQOptimizationWidget.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderDialog.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderDialog.cpp:66: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTimeSeries.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryTask.h:41, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderDialog.cpp:55: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderDialog.cpp:861:94: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 861 | mpParentWindow->getMainWidget()->getTrajectoryWidget()->enter(pDataModel->getTaskList()->operator[]("Time-Course").getCN()); /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderDialog.cpp: In member function ‘std::vector* SliderDialog::getCSlidersForObject(CDataObject*, std::vector*) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderDialog.cpp:1087:8: warning: variable ‘issueWarning’ set but not used [-Wunused-but-set-variable] 1087 | bool issueWarning = false; | ^~~~~~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SliderSettingsDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SliderSettingsDialog.cpp [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/StateSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_StateSubwidget.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.cpp:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.cpp:38: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.h: In constructor ‘StateSubwidget::StateSubwidget(QWidget*, const char*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.h:46:12: warning: ‘StateSubwidget::mpModel’ will be initialized after [-Wreorder] 46 | CModel * mpModel; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.h:45:28: warning: ‘const CSteadyStateTask* StateSubwidget::mpTask’ [-Wreorder] 45 | const CSteadyStateTask * mpTask; | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.cpp:53:1: warning: when initialized here [-Wreorder] 53 | StateSubwidget::StateSubwidget(QWidget* parent, const char* name) | ^~~~~~~~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/SteadyStateWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SteadyStateWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CProcessReport.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CProgressBar.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SteadyStateWidget.cpp:32: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SteadyStateWidget.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_StateSubwidget.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/StateSubwidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSteadyStateResult.h:22, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSteadyStateResult.h:16, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/SteadyStateWidget.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 80%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/TaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/TaskWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/TaskWidget.cpp:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/TaskWidget.cpp:56: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/TaskWidget.cpp:57: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/copasiWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiWidget.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/copasiui3window.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp:63: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp:78: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSEDMLImportDialog.h:12, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp:96: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h: In member function ‘void Ui_CQSEDMLImportDialog::setupUi(QDialog*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h:97:57: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 97 | cbmReportSelect->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp:35: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h:97:57: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 97 | cbmReportSelect->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp:59: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.h: In constructor ‘CopasiUI3Window::CopasiUI3Window()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.h:626:8: warning: ‘CopasiUI3Window::mSBWIgnoreShutdownEvent’ will be initialized after [-Wreorder] 626 | bool mSBWIgnoreShutdownEvent; | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.h:459:11: warning: ‘QMenu* CopasiUI3Window::mpMenuSEDMLSupport’ [-Wreorder] 459 | QMenu * mpMenuSEDMLSupport; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp:242:1: warning: when initialized here [-Wreorder] 242 | CopasiUI3Window::CopasiUI3Window(): | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp: In member function ‘void CopasiUI3Window::slotUpdateMIRIAM()’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp:2551:8: warning: variable ‘success’ set but not used [-Wunused-but-set-variable] 2551 | bool success = true; | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp: In member function ‘void CopasiUI3Window::slotCheckForUpdateFinished(bool)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/copasiui3window.cpp:4195:24: warning: unused variable ‘pReject’ [-Wunused-variable] 4195 | QPushButton *pReject = Question.addButton(QMessageBox::Cancel); | ^~~~~~~ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/listviews.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/listviews.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/listviews.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/listviews.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQCompartment.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartment.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:49: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQNotes.h:50, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQModelWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelWidget.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:47: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:70: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:32: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h: At global scope: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:114: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataArray.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQArrayAnnotationsWidget.h:45, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQMoietiesTaskResult.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMoietiesTaskResult.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:66: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp: In member function ‘CopasiWidget* ListViews::createWidgetFromId(const WidgetType&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘NotFound’ not handled in switch [-Wswitch] 504 | switch (id) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘COPASI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘Biochemical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘Mathematical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘UpdateOrder’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘Tasks’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘StoichiometricAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘Analytics’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘AnalyticsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘OutputSpecifications’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:504:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp: In member function ‘CopasiWidget* ListViews::findTabWidgetFromId(const WidgetType&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘NotFound’ not handled in switch [-Wswitch] 837 | switch (id) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘COPASI’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Model’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Biochemical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘CompartmentDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘SpeciesDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘ReactionDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘GlobalQuantityDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘EventDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘ParameterOverview’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘ParameterSetDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Mathematical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘DifferentialEquations’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Matrices’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘UpdateOrder’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Diagrams’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Tasks’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘SteadyState’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘SteadyStateResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘StoichiometricAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘ElementaryModes’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘ElementaryModesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘MassConservation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘MassConservationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘TimeCourse’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘TimeCourseResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘MetabolicControlAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘MetabolicControlAnalysisResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘LyapunovExponents’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘LyapunovExponentsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘TimeScaleSeparationAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘TimeScaleSeparationAnalysisResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘TimeCourseSensitivities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘TimeCourseSensitivitiesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘CrossSection’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘CrossSectionResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Analytics’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘AnalyticsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘ParameterScan’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Optimization’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘OptimizationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘ParameterEstimation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘ParameterEstimationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Sensitivities’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘SensitivitiesResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘LinearNoiseApproximation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘LinearNoiseApproximationResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘Oscillation’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘OutputSpecifications’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘PlotDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘ReportTemplateDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘FunctionDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘UnitDetail’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:837:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp: In member function ‘CopasiWidget* ListViews::findWidgetFromId(const WidgetType&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:908:10: warning: enumeration value ‘Biochemical’ not handled in switch [-Wswitch] 908 | switch (id) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:908:10: warning: enumeration value ‘Mathematical’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:908:10: warning: enumeration value ‘UpdateOrder’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:908:10: warning: enumeration value ‘Tasks’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:908:10: warning: enumeration value ‘StoichiometricAnalysis’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:908:10: warning: enumeration value ‘Analytics’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:908:10: warning: enumeration value ‘AnalyticsResult’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:908:10: warning: enumeration value ‘OutputSpecifications’ not handled in switch [-Wswitch] /builddir/build/BUILD/COPASI-Build-284/copasi/UI/listviews.cpp:908:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' [ 81%] Built target binding_python_lib /usr/bin/gmake -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' cd /builddir/build/BUILD/COPASI-Build-284 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CMakeFiles/CopasiSE.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/gmake -f copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build.make copasi/CopasiSE/CMakeFiles/CopasiSE.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' [ 81%] Building CXX object copasi/CopasiSE/CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -MD -MT copasi/CopasiSE/CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -MF CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o.d -o CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp:41: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp:48: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp:57: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CSparseMatrix.h:148:19: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 148 | public std::iterator< std::forward_iterator_tag, C_FLOAT64, ptrdiff_t > | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp:31: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp:525:25: required from here /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: 525 | size_t imax = TaskList.size(); /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCopasiTask; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCopasiTask; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp: In function ‘int runScheduledTasks(CProcessReport*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp:525:10: warning: unused variable ‘imax’ [-Wunused-variable] 525 | size_t imax = TaskList.size(); | ^~~~ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/objectdebug.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/objectdebug.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp: In function ‘exportSBML()’: /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE/CopasiSE.cpp:827:27: warning: ‘SBMLSchema’ may be used uninitialized [-Wmaybe-uninitialized] 827 | copasi::SBMLSchema_enum SBMLSchema; | ^~~~~~~~~~ [ 81%] Linking CXX executable CopasiSE cd /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSE && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiSE.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread CMakeFiles/CopasiSE.dir/CopasiSE.cpp.o -o CopasiSE ../libCOPASISE.a /lib64/libsedml.so /usr/lib64/libCombine.so.0.2.20 -lz -lZipper -lnuml -lxml2 -lbz2 -lz -lZipper -lnuml -lxml2 -lbz2 -lm -ldl -lexpat /lib64/libcrossguid2.so /usr/lib64/libuuid.so /usr/lib64/libraptor.so /usr/lib64/libsbml.so /usr/lib64/libexpat.so /usr/lib64/libflexiblas.so [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/parametertable.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/parametertable.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/parametertable.cpp:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReactionInterface.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/parametertable.cpp:39: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnit.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModelValue.h:39, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:39: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunction.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:47: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:42, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/parametertable.cpp:40: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitValidator.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/parametertable.cpp:43: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/parametertable.cpp: In member function ‘void ParameterTable::updateTable(CReactionInterface&, CReaction*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/parametertable.cpp:202:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 202 | switch (ri.getUsage(i)) | ^ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/qtUtilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.cpp: In function ‘QVariant getParameterValue(const CCopasiParameter*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.cpp:82:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 82 | switch (pParameter->getType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.cpp: In function ‘QList > getParameterValidValues(const CCopasiParameter*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.cpp:146:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 146 | switch (pParameter->getType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.cpp: In function ‘bool setParameterValue(CCopasiParameter*, const QVariant&)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/qtUtilities.cpp:220:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 220 | switch (pParameter->getType()) | ^ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o -MF CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/resourcesUI/CQIconResource.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/resourcesUI/CQIconResource.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp: In member function ‘QVariant CQUndoDM::displayData(const QModelIndex&) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp:98:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 98 | if (mpUndoStack->size() <= index.row() || | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp:107:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 107 | return (index.row() <= mpUndoStack->currentIndex() && | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp:116:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 116 | if ((index.row() <= mpUndoStack->currentIndex() && | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp:153:20: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 153 | switch (Property.getType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp:197:24: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 197 | switch (Property.getType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp:241:24: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 241 | switch (Property.getType()) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp:104:10: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 104 | switch (static_cast< ColumnType >(index.column())) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp: In member function ‘virtual QVariant CQUndoDM::headerData(int, Qt::Orientation, int) const’: /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDM.cpp:296:14: warning: enumeration value ‘__SIZE’ not handled in switch [-Wswitch] 296 | switch (static_cast< ColumnType >(section)) | ^ [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/undoUI/CQUndoDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/CQUndoDialog.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qrc_copasi.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qrc_copasi.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/barChart/moc_CQ3DBarsModifier.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/barChart/moc_CQ3DBarsModifier.cpp.o -MF CMakeFiles/libCOPASIUI.dir/barChart/moc_CQ3DBarsModifier.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/barChart/moc_CQ3DBarsModifier.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/barChart/moc_CQ3DBarsModifier.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_BezierCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_BezierCurve.cpp [ 81%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CArrow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CArrow.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CCompartmentGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CCompartmentGraphNode.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CDataEntity.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CDataEntity.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CGraphCurve.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CGraphNode.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CGraphNode.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CLabel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CLabel.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQAutolayoutWizard.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQAutolayoutWizard.cpp In member function ‘getSpeciesChanges’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/CQAutolayoutWizard.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQAutolayoutWizard.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:33: /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:95:16: note: by ‘virtual void CLMetabGlyph::exportToSBML(SpeciesGlyph*, const std::map&, std::map, const SBase*>&) const’ 95 | virtual void exportToSBML(SpeciesGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:168:16: note: by ‘virtual void CLCompartmentGlyph::exportToSBML(CompartmentGlyph*, const std::map&, std::map, const SBase*>&) const’ 168 | virtual void exportToSBML(CompartmentGlyph * cg, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGlyphs.h:258:16: note: by ‘virtual void CLTextGlyph::exportToSBML(TextGlyph*, const std::map&, std::map, const SBase*>&) const’ 258 | virtual void exportToSBML(TextGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:160:16: note: by ‘virtual void CLReferenceGlyph::exportToSBML(ReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 160 | virtual void exportToSBML(ReferenceGlyph * g, //TODO | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:294:16: note: by ‘virtual void CLMetabReferenceGlyph::exportToSBML(SpeciesReferenceGlyph*, const std::map&, std::map, const SBase*>&, const std::map&) const’ 294 | virtual void exportToSBML(SpeciesReferenceGlyph * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:389:16: note: by ‘virtual void CLGeneralGlyph::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&, std::map&) const’ 389 | virtual void exportToSBML(GraphicalObject * g, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLGraphicalObject.h:163:16: warning: ‘virtual void CLGraphicalObject::exportToSBML(GraphicalObject*, const std::map&, std::map, const SBase*>&) const’ was hidden [-Woverloaded-virtual=] 163 | virtual void exportToSBML(GraphicalObject * sbmlobject, | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/layout/CLReactionGlyph.h:471:16: note: by ‘virtual void CLReactionGlyph::exportToSBML(ReactionGlyph*, const std::map&, std::map, const SBase*>&, std::map&) const’ 471 | virtual void exportToSBML(ReactionGlyph * g, | ^~~~~~~~~~~~ [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQCurrentValueTable.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQCurrentValueTable.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQLayoutThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQLayoutThread.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQPlayerControlWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQPlayerControlWidget.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQSpringLayoutParameterWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQSpringLayoutParameterWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQSpringLayoutParameterWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CQSpringLayoutParameterWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CQSpringLayoutParameterWindow.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CSimSummaryInfo.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CSimSummaryInfo.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CVisParameters.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CVisParameters.cpp.o -MF CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CVisParameters.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/layoutUI/moc_CVisParameters.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI/moc_CVisParameters.cpp [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQBiologicalDescriptionDM.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5404:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5407:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5410:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 82%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQCreatorDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQCreatorDM.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQMiriamWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQMiriamWidget.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQModifiedDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQModifiedDM.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQRDFTreeView.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQRDFTreeViewItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQRDFTreeViewItem.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/MIRIAMUI/moc_CQReferenceDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI/moc_CQReferenceDM.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_BandedGraphWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_BandedGraphWidget.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DCurveData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_C2DCurveData.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_C2DPlotCurve.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_C2DPlotCurve.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CBandedGraphData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CBandedGraphData.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CHistoCurveData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CHistoCurveData.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CLinearColorMap.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CLinearColorMap.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_COutputHandlerPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_COutputHandlerPlot.cpp [ 83%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotInterface.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotInterface.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CPlotInterface.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CPlotSpectogram.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CPlotSpectogram.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQAdvancedPlotSettings.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQAdvancedPlotSettings.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQAdvancedPlotSettings.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQAdvancedPlotSettings.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQAdvancedPlotSettings.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQCustomPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQCustomPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQCustomPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQCustomPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQCustomPlot.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptions.cpp: In function ‘init’: /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptions.cpp:73:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 73 | std::string * Utf8 = new std::string[argc]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQDataVizPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQDataVizPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQDataVizPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQDataVizPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQDataVizPlot.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQExtender.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQExtender.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQExtender.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQExtender.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQExtender.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQMarchingSquares.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQMarchingSquares.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQMarchingSquares.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQMarchingSquares.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQMarchingSquares.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotColors.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQPlotColors.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotEditWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQPlotEditWidget.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQPlotSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQPlotSubwidget.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQSpectogramWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQSpectogramWidget.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQtChartsPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQtChartsPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQtChartsPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQtChartsPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQtChartsPlot.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQwtPlot.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQwtPlot.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQwtPlot.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CQwtPlot.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CQwtPlot.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_CSpectorgramData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_CSpectorgramData.cpp [ 84%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_HistoWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_HistoWidget.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_curve2dwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_curve2dwidget.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_plotwindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_plotwindow.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollbar.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_scrollbar.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o -MF CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/plotUI/moc_scrollzoomer.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/plotUI/moc_scrollzoomer.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o -MF CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/tex/moc_CMathMLToTeX.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tex/moc_CMathMLToTeX.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o -MF CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/tex/moc_CStructureParser.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/tex/moc_CStructureParser.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_AboutDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_AboutDialog.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CColorScale.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CColorScale.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlot2YSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlot2YSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlot2YSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlot2YSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CCopasiPlot2YSelectionDialog.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiPlotSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CCopasiPlotSelectionDialog.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CCopasiSelectionDialog.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CCopasiSelectionWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CCopasiSelectionWidget.cpp [ 85%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CLNAResultSubwidget.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CLNAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CLNAResultWidget.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CMCAResultSubwidget.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CMCAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CMCAResultWidget.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CProgressBar.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CProgressBar.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQAnalyticsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQAnalyticsWidget.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQArrayAnnotationsWidget.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQArrayAnnotationsWidgetDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQArrayAnnotationsWidgetDM.cpp In member function ‘resize’, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:333:11, inlined from ‘removeAnalysisEvent.isra’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:4483:77: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new: In member function ‘removeAnalysisEvent.isra’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseDataModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQBaseDataModel.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseTreeDataModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseTreeDataModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseTreeDataModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBaseTreeDataModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQBaseTreeDataModel.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPane.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQBrowserPane.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQBrowserPaneDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQBrowserPaneDM.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCheckModelWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCheckModelWindow.cpp [ 86%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQComboDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQComboDelegate.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartment.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCompartment.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQCompartment.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQCompartment.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCompartment.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentCopyOptions.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCompartmentCopyOptions.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCompartmentDM.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCompartmentsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCompartmentsWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCopasiApplication.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCopasiApplication.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQCrossSectionTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQCrossSectionTaskWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDateTimeEditDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDateTimeEditDelegate.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDependenciesWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDependencyDialog.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDependencyWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDependencyWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQDifferentialEquations.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQDifferentialEquations.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMListWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMListWidget.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMNetReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMNetReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMNetReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMNetReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMNetReactionDM.cpp [ 87%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMReactionDM.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMResultWidget.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMSpeciesDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMSpeciesDM.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEFMWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEFMWidget.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEventDM.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEventWidget1.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQEventWidget1.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEventWidget1.h:25, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEventWidget1.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 528 | CDataVectorN < CEventAssignment > mAssignments; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQEventsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQEventsWidget.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpandModelData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExpandModelData.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExperimentData.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExperimentSelection.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExperimentSelection.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionMmlStackedWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExpressionMmlStackedWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExpressionMmlStackedWidget.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQExpressionWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExpressionWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQExpressionWidget.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingItemWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingItemWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingItemWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingItemWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFittingItemWidget.cpp [ 88%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFittingResult.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResultTab1.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResultTab1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResultTab1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingResultTab1.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFittingResultTab1.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFittingWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFittingWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFluxModeDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFluxModeDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFluxModeDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFluxModeDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFluxModeDM.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFunctionDM.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQFunctionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQFunctionsWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQGlobalQuantitiesWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQGlobalQuantityDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQGlobalQuantityDM.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLNAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLNAWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLayoutsDM.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLayoutsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLayoutsWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLyapResultWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQLyapWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQLyapWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMCAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMCAWidget.cpp [ 89%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMathMatrixWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMathMatrixWidget.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMatrixDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMatrixDialog.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMergingData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMergingData.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMessageBox.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMessageBox.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMmlScrollView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMmlScrollView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMmlScrollView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMmlScrollView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMmlScrollView.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelValue.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelValue.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelValue.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelValue.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQModelValue.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQModelValue.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQModelValue.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQModelValue.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQModelWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQModelWidget.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMoietiesTaskResult.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMoietiesTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMoietiesTaskWidget.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQMultipleSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQMultipleSelectionDialog.cpp In member function ‘resize’, inlined from ‘copy’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:478:19, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:343:9, inlined from ‘intialize’ at /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:100:74, inlined from ‘start’ at /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:523:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new: In member function ‘start’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQNameSelectionDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQNameSelectionDialog.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQNotes.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQNotes.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptPopulation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQOptPopulation.cpp [ 90%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQOptimizationResult.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOptimizationWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQOptimizationWidget.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQOptimizationWidget.h:29, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQOptimizationWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQOptimizationWidget.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQOscillationTaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQOscillationTaskWidget.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterEstimationResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterEstimationResult.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterGroupDM.cpp gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' [ 91%] Built target CopasiSE /usr/bin/gmake -f copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build.make copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' cd /builddir/build/BUILD/COPASI-Build-284 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/gmake -f copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build.make copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' [ 91%] Building CXX object copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -isystem /usr/include/sbml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -MD -MT copasi/CopasiSBW/CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o -MF CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o.d -o CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW/SBWTranslator.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterGroupView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterGroupView.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:19, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:27, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiTypes.h:23, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW/SBWTranslator.cpp:27: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CEvent.h:528:37: required from here 528 | CDataVectorN < CEventAssignment > mAssignments; | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEventAssignment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEventAssignment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 51 | CDataVectorNS< CFunctionParameter > mParameters; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CRootContainer.h:9, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:20: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathEvent.h:22: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:111:31: warning: ‘virtual const CDataObject* CDataContainer::getValueObject() const’ was hidden [-Woverloaded-virtual=] 111 | virtual const CDataObject * getValueObject() const override; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:828:17: note: by ‘CMathObject* CMathContainer::getValueObject(const CMathObject*) const’ 828 | CMathObject * getValueObject(const CMathObject * pInitialObject) const; | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:31: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:186:31: warning: ‘virtual const CDataObject* CDataObject::getDataObject() const’ was hidden [-Woverloaded-virtual=] 186 | virtual const CDataObject * getDataObject() const override; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:579:17: note: by ‘CDataObject* CMathContainer::getDataObject(const double*) const’ 579 | CDataObject * getDataObject(const C_FLOAT64 * pDataValue) const; | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataObject.h:180:18: warning: ‘virtual void* CDataObject::getValuePointer() const’ was hidden [-Woverloaded-virtual=] 180 | virtual void * getValuePointer() const override; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:821:15: note: by ‘double* CMathContainer::getValuePointer(const double*) const’ 821 | C_FLOAT64 * getValuePointer(const C_FLOAT64 * pInitialValue) const; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:139:18: warning: ‘virtual size_t CDataContainer::getIndex(const CDataObject*) const’ was hidden [-Woverloaded-virtual=] 139 | virtual size_t getIndex(const CDataObject * pObject) const; | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CReaction.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:34: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: by ‘int CMetabOld::getIndex() const’ 450 | C_INT32 getIndex() const; | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CCompartment.h:52:28: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: 52 | CDataVectorNS < CMetab > mMetabolites; /builddir/build/BUILD/COPASI-Build-284/copasi/model/CMetab.h:450:11: note: | ^~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CMetab; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CMetab; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/core/CArray.h:14, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:25: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:238:29: warning: ‘CMatrix& CMatrix::operator=(const CType&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 238 | virtual CMatrix & operator = (const CType & value) | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:43: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CMatrix.h:217:29: warning: ‘CMatrix& CMatrix::operator=(const CMatrix&) [with CType = double]’ was hidden [-Woverloaded-virtual=] 217 | virtual CMatrix & operator = (const CMatrix & rhs) | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: by ‘CLinkMatrix& CLinkMatrix::operator=(const CLinkMatrix&)’ 20 | class CLinkMatrix: public CMatrix< C_FLOAT64 > | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1175:34: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: 1175 | CDataVectorNS < CCompartment > mCompartments; /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CLinkMatrix.h:20:7: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CCompartment; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CCompartment; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1190:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1190 | CDataVectorNS< CReaction > mSteps; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReaction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReaction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1195:26: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1195 | CDataVectorN< CEvent > mEvents; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CEvent; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CEvent; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1205:31: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1205 | CDataVectorN< CModelValue > mValues; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelValue; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelValue; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/model/CModel.h:1215:38: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 1215 | CDataVectorN< CModelParameterSet > mParameterSets; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CModelParameterSet; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CModelParameterSet; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:27:33: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 27 | class CUnitDefinitionDB: public CDataVectorN< CUnitDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CUnitDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CUnitDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1223:16: warning: ‘bool CDataVectorN::add(CDataObject*, const bool&) [with CType = CUnitDefinition]’ was hidden [-Woverloaded-virtual=] 1223 | virtual bool add(CDataObject * pObject, const bool & adopt = true) | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiModelTypes.h:53: /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: by ‘CUnitDefinitionDB::add’ 39 | virtual bool add(CUnitDefinition * src, bool adopt = false); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/report/CReportDefinitionVector.h:35:39: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: 35 | class CReportDefinitionVector: public CDataVectorN< CReportDefinition > /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CUnitDefinitionDB.h:39:16: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CReportDefinition; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CReportDefinition; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/plot/COutputDefinitionVector.h:31:40: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 31 | class COutputDefinitionVector : public CDataVectorN /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CPlotSpecification; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CPlotSpecification; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/sbml/SBMLImporter.h:34, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiTaskTypes.h:99, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiTypes.h:25: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterOverviewDM.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterOverviewWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterOverviewWidget.cpp [ 91%] Linking CXX executable CopasiSBW cd /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiSBW.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread -rdynamic CMakeFiles/CopasiSBW.dir/SBWTranslator.cpp.o -o CopasiSBW ../libCOPASISE.a //usr/lib64/libSBW.so -lpthread -lz /lib64/libsedml.so /usr/lib64/libCombine.so.0.2.20 -lZipper -lnuml -lxml2 -lbz2 -lm -ldl -lexpat -lcrossguid2 -luuid /usr/lib64/libraptor.so /usr/lib64/libsbml.so /usr/lib64/libexpat.so -lflexiblas -lz [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterResultItemModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterResultItemModel.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterSetsDM.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQParameterSetsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQParameterSetsWidget.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQPlotDM.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPlotsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQPlotsWidget.cpp [ 91%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPreferenceDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQPreferenceDialog.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQProgressDialog.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQProgressItem.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemBar.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQProgressItemBar.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQProgressItemText.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQProgressItemText.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQPushButtonDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQPushButtonDelegate.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReactionDM.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReactionsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReactionsWidget.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportDM.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinition.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportDefinition.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportDefinitionSelect.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportDefinitionSelect.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportListItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportListItem.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQReportsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQReportsWidget.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSBMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSBMLFileDialog.cpp [ 92%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSEDMLFileDialog.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLImportDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLImportDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLImportDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSEDMLImportDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSEDMLImportDialog.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSEDMLImportDialog.h:12, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSEDMLImportDialog.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h: In member function ‘void Ui_CQSEDMLImportDialog::setupUi(QDialog*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h:97:57: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 97 | cbmReportSelect->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h:18: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSEDMLImportDialog.h:97:57: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 97 | cbmReportSelect->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQScanWidgetParameterSet.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQScanWidgetParameterSet.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQScanWidgetParameterSet.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQScanWidgetParameterSet.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQScanWidgetParameterSet.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptions.cpp: In function ‘init’: /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptions.cpp:73:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 73 | std::string * Utf8 = new std::string[argc]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQScrolledDependenciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQScrolledDependenciesWidget.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSensResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSensResultWidget.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSimpleSelectionTree.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSimpleSelectionTree.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSortFilterProxyModel.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSortFilterProxyModel.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpecieDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSpecieDM.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesDetail.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSpeciesDetail.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQSpeciesDetail.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQSpeciesDetail.h:21, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSpeciesDetail.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpeciesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSpeciesWidget.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSpinBoxDelegate.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSpinBoxDelegate.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSplashWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSplashWidget.cpp In member function ‘getSpeciesChanges’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQStartValueReset.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQStartValueReset.cpp [ 93%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQSteadyStateResult.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQSteadyStateResult.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultSubWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTSSAResultSubWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAResultWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTSSAResultWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSATimeScaleWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTSSATimeScaleWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTSSAWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTSSAWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTabWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTabWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTableView.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTableWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTableWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskBtnWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTaskBtnWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskHeaderWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTaskHeaderWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskMethodWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTaskMethodWidget.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTaskThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTaskThread.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTextDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTextDialog.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQThread.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQThread.cpp [ 94%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSensWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSensWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSensWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSensWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTimeSensWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTimeSeriesDM.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTimeSeriesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTimeSeriesWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQTrajectoryWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQTrajectoryWidget.cpp In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5404:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5407:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5410:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘resize’, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:333:11, inlined from ‘removeAnalysisEvent’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:4483:77: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new: In member function ‘removeAnalysisEvent’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoTester.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoTester.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoTester.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUndoTester.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUndoTester.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUnitDM.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDetail.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDetail.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDetail.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitDetail.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUnitDetail.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUnitsWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUnitsWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdateAvogadro.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUpdateAvogadro.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQUpdatesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQUpdatesWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidator.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQValidator.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CQValidatorUnit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CQValidatorUnit.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanContainerWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanContainerWidget.cpp [ 95%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanItemData.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanItemData.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRandom.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanWidgetRandom.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanWidgetRepeat.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanWidgetScan.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CScanWidgetTask.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CUpDownSubwidget.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CWindowInterface.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ChemEqValidator.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CopasiFileDialog.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CopasiGuiTypes.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_CopasiSlider.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_DataModelGUI.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_DefaultplotDialog.cpp [ 96%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_FunctionWidget1.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_FunctionWidget1.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/FunctionWidget1.h:28, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_FunctionWidget1.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_MyLineEdit.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ObjectBrowserDialog.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ObjectBrowserItem.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ObjectBrowserWidget.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ReactionsWidget1.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CExpression.h:33, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:40, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_CQExpressionMmlStackedWidget.h:24, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionMmlStackedWidget.h:26, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:31, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ReactionsWidget1.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ReactionsWidget1.cpp:10: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/utilities/CCopasiParameter.h:32, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//qtUtilities.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI//CQValidator.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQExpressionWidget.h:37: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h: In member function ‘void Ui_ReactionsWidget1::setupUi(CopasiWidget*)’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/QComboBox:1, from /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:19: /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/ui_ReactionsWidget1.h:103:54: warning: ‘QComboBox::AdjustToMinimumContentsLength’ is deprecated: Use AdjustToContents or AdjustToContentsOnFirstShow [-Wdeprecated-declarations] 103 | mpCmbRateLaw->setSizeAdjustPolicy(QComboBox::AdjustToMinimumContentsLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtWidgets/qcombobox.h:141:9: note: declared here 141 | AdjustToMinimumContentsLength Q_DECL_ENUMERATOR_DEPRECATED_X( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_ScanWidget.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SensWidgetComboBox.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SensitivitiesWidget.cpp /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SliderDialog.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SliderSettingsDialog.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_StateSubwidget.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_SteadyStateWidget.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_TaskWidget.cpp [ 97%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_copasiWidget.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_copasiui3window.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_listviews.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_objectdebug.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_parametertable.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o -MF CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/UI/moc_qtUtilities.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o -MF CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/resourcesUI/moc_CQIconResource.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o -MF CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/wizard/moc_wizard.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQAnimationControls.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQAnimationSettingsEditor.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQAnimationWindow.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQConnectionGraphicsItem.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQCopasiAnimation.cpp [ 98%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQCopasiEffect.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQCopasiGraphicsItem.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQEffectDescription.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQEffectDescriptionEdit.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQElementProperties.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQLabelGraphicsItem.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQLayoutScene.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQLayoutView.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQRenderConverter.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQRoundedRect.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o -MF CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/qlayout/moc_CQStyledGraphicsItem.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQZoomableView.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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-I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o -MF CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/moc_CQUndoDM.cpp [ 99%] Building CXX object copasi/CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o -MF CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o.d -o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/undoUI/moc_CQUndoDialog.cpp [100%] Linking CXX static library libCOPASIUI.a cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/cmake -P CMakeFiles/libCOPASIUI.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/COPASI-Build-284/copasi && /usr/bin/cmake -E cmake_link_script CMakeFiles/libCOPASIUI.dir/link.txt --verbose=1 /usr/bin/ar qc libCOPASIUI.a CMakeFiles/libCOPASIUI.dir/MIRIAMUI/CQBiologicalDescriptionDM.cpp.o 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CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetRepeat.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetScan.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CScanWidgetTask.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CUpDownSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CWindowInterface.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ChemEqValidator.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiFileDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiGuiTypes.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_CopasiSlider.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_DataModelGUI.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_DefaultplotDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_FunctionWidget1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_MyLineEdit.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserItem.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ObjectBrowserWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ReactionsWidget1.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_ScanWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SensWidgetComboBox.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SensitivitiesWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SliderDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SliderSettingsDialog.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_StateSubwidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_SteadyStateWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_TaskWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiWidget.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_copasiui3window.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_listviews.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_objectdebug.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_parametertable.cpp.o CMakeFiles/libCOPASIUI.dir/UI/moc_qtUtilities.cpp.o CMakeFiles/libCOPASIUI.dir/resourcesUI/moc_CQIconResource.cpp.o CMakeFiles/libCOPASIUI.dir/wizard/moc_wizard.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationControls.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationSettingsEditor.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQAnimationWindow.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQConnectionGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiAnimation.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiEffect.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQCopasiGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescription.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQEffectDescriptionEdit.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQElementProperties.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLabelGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutScene.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQLayoutView.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRenderConverter.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQRoundedRect.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQStyledGraphicsItem.cpp.o CMakeFiles/libCOPASIUI.dir/qlayout/moc_CQZoomableView.cpp.o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDM.cpp.o CMakeFiles/libCOPASIUI.dir/undoUI/moc_CQUndoDialog.cpp.o In member function ‘resize’, inlined from ‘copy’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:478:19, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:343:9, inlined from ‘intialize’ at /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:100:74: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new: In member function ‘intialize’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/ranlib libCOPASIUI.a gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' [100%] Built target libCOPASIUI /usr/bin/gmake -f copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build.make copasi/CopasiUI/CMakeFiles/CopasiUI.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' cd /builddir/build/BUILD/COPASI-Build-284 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiUI /builddir/build/BUILD/COPASI-Build-284 /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiUI /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiUI/CMakeFiles/CopasiUI.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/gmake -f copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build.make copasi/CopasiUI/CMakeFiles/CopasiUI.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/COPASI-Build-284' [100%] Building CXX object copasi/CopasiUI/CMakeFiles/CopasiUI.dir/main.cpp.o cd /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiUI && /usr/bin/g++ -DHAVE_F2C_H -DLINUX -DLinux -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_DATAVISUALIZATION_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PRINTSUPPORT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/usr/include/crossguid2 -I/builddir/build/BUILD/COPASI-Build-284 -I/builddir/build/BUILD/COPASI-Build-284/-I/usr/include/numl -I/usr/include/qt5/libmml-qt5 -I/usr/include/qt5/qwt -I/builddir/build/BUILD/COPASI-Build-284/copasi/barChart -I/builddir/build/BUILD/COPASI-Build-284/copasi/layoutUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/MIRIAMUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/plotUI -I/builddir/build/BUILD/COPASI-Build-284/copasi/tex -I/builddir/build/BUILD/COPASI-Build-284/copasi/UI -I/builddir/build/BUILD/COPASI-Build-284/copasi/wizard -I/builddir/build/BUILD/COPASI-Build-284/copasi/qlayout -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoFramework -I/builddir/build/BUILD/COPASI-Build-284/copasi/undoUI -I/builddir/build/BUILD/COPASI-Build-284/copasi -isystem /usr/include/sbml -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtConcurrent -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtNetwork -isystem /usr/include/qt5/QtOpenGL -isystem /usr/include/qt5/QtPrintSupport -isystem /usr/include/qt5/QtSvg -isystem /usr/include/qt5/QtXml -isystem /usr/include/qt5/QtDataVisualization -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -std=gnu++17 -fPIC -MD -MT copasi/CopasiUI/CMakeFiles/CopasiUI.dir/main.cpp.o -MF CMakeFiles/CopasiUI.dir/main.cpp.o.d -o CMakeFiles/CopasiUI.dir/main.cpp.o -c /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiUI/main.cpp In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:36, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CCallParameters.h:37, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNodeCall.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationNode.h:621, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CEvaluationTree.h:30, from /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:35, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiUI/main.cpp:44: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1417:32: required from ‘class CDataVectorNS’ 1417 | template < class CType > class CDataVectorNS: public CDataVectorN < CType > | ^~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:51:39: required from here 51 | CDataVectorNS< CFunctionParameter > mParameters; | ^~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunctionParameter; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunctionParameter; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ In file included from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiDataModel/CDataModel.h:18, from /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiUI/main.cpp:42: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:115:8: note: by ‘CFunctionParameters::add’ 115 | bool add(const std::string & name, | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:123:16: warning: ‘virtual bool CDataContainer::remove(CDataObject*)’ was hidden [-Woverloaded-virtual=] 123 | virtual bool remove(CDataObject * pObject); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: by ‘void CFunctionParameters::remove(const std::string&)’ 123 | void remove(const std::string & name); | ^~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h: In instantiation of ‘class CDataVectorN’: /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:59:30: required from here /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: 59 | CDataVectorN < CFunction > mLoadedFunctions; /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionParameters.h:123:8: note: | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:852:18: warning: ‘size_t CDataVector::getIndex(const CDataObject*) const [with CType = CFunction; size_t = long unsigned int]’ was hidden [-Woverloaded-virtual=] 852 | virtual size_t getIndex(const CDataObject * pObject) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataVector.h:1359:18: note: by ‘size_t CDataVectorN::getIndex(const std::string&) const [with CType = CFunction; size_t = long unsigned int; std::string = std::__cxx11::basic_string]’ 1359 | virtual size_t getIndex(const std::string &name) const | ^~~~~~~~ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CDataContainer.h:116:16: warning: ‘virtual bool CDataContainer::add(CDataObject*, const bool&)’ was hidden [-Woverloaded-virtual=] 116 | virtual bool add(CDataObject * pObject, const bool & adopt = true); | ^~~ /builddir/build/BUILD/COPASI-Build-284/copasi/function/CFunctionDB.h:127:8: note: by ‘bool CFunctionDB::add(CFunction*, const bool&)’ 127 | bool add(CFunction * pFunction, const bool & adopt); | ^~~ [100%] Linking CXX executable CopasiUI cd /builddir/build/BUILD/COPASI-Build-284/copasi/CopasiUI && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopasiUI.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fno-strict-aliasing -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/builddir/build/BUILD/COPASI-Build-284/copasi/lapack -I/builddir/build/BUILD/COPASI-Build-284/copasi/CopasiSBW -I/usr/include/flexiblas -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -pthread CMakeFiles/CopasiUI.dir/main.cpp.o -o CopasiUI ../libCOPASIUI.a /usr/lib64/libQt5Concurrent.so.5.15.12 /usr/lib64/libQt5Network.so.5.15.12 /usr/lib64/libQt5OpenGL.so.5.15.12 /usr/lib64/libQt5PrintSupport.so.5.15.12 /usr/lib64/libQt5Svg.so.5.15.12 /usr/lib64/libQt5Widgets.so.5.15.12 /usr/lib64/libQt5Xml.so.5.15.12 /usr/lib64/libQt5DataVisualization.so.5.15.12 /usr/lib64/libQt5Gui.so.5.15.12 /usr/lib64/libQt5Core.so.5.15.12 ../libCOPASISE.a /lib64/libsedml.so /usr/lib64/libCombine.so.0.2.20 -lz -lZipper -lnuml -lxml2 -lbz2 -lz -lZipper -lnuml -lxml2 -lbz2 -lm -ldl -lexpat /lib64/libcrossguid2.so /usr/lib64/libuuid.so /usr/lib64/libraptor.so /usr/lib64/libsbml.so /usr/lib64/libexpat.so /usr/lib64/libflexiblas.so /usr/lib64/libqwt-qt5.so /usr/lib64/libmml.so /usr/lib64/libqcustomplot-qt5.so /usr/lib64/libGL.so /usr/lib64/libGLU.so //usr/lib64/libSBW.so /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.h:40:7: warning: type ‘struct CQMmlScrollView’ violates the C++ One Definition Rule [-Wodr] 40 | class CQMmlScrollView : public QScrollArea | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.h:40:7: note: a different type is defined in another translation unit 40 | class CQMmlScrollView : public QScrollArea | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.h:51:16: note: the first difference of corresponding definitions is field ‘mpMmlWidget’ 51 | QtMmlWidget* mpMmlWidget; | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.h:40:7: note: a type with different number of fields is defined in another translation unit 40 | class CQMmlScrollView : public QScrollArea | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.h:46:3: warning: type of ‘__dt_del ’ does not match original declaration [-Wlto-type-mismatch] 46 | ~CQMmlScrollView(); | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.cpp:57:1: note: ‘__dt_del ’ was previously declared here 57 | CQMmlScrollView::~CQMmlScrollView() | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.cpp:57:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.h:46:3: warning: type of ‘__dt_comp ’ does not match original declaration [-Wlto-type-mismatch] 46 | ~CQMmlScrollView(); | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.cpp:57:1: note: ‘__dt_comp ’ was previously declared here 57 | CQMmlScrollView::~CQMmlScrollView() | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQMmlScrollView.cpp:57:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘resize’, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:333:11, inlined from ‘removeAnalysisEvent.isra’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:4483:77: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new: In member function ‘removeAnalysisEvent.isra’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize.constprop’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' [100%] Built target CopasiSBW In member function ‘resize’, inlined from ‘copy’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:478:19, inlined from ‘__ct ’ at /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:343:9, inlined from ‘intialize’ at /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:100:74, inlined from ‘start’ at /builddir/build/BUILD/COPASI-Build-284/copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp:523:23: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new: In member function ‘start’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h: In member function ‘resize’: /builddir/build/BUILD/COPASI-Build-284/copasi/core/CVector.h:438:50: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 438 | CVectorCore< CType >::mpBuffer = new CType[CVectorCore< CType >::mSize]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5404:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5407:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘relocateVector’, inlined from ‘relocate’ at /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.cpp:5410:17: /builddir/build/BUILD/COPASI-Build-284/copasi/math/CMathContainer.h:103:46: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 103 | vector.initialize(size, (size > 0) ? new CType[size] : NULL); | ^ /usr/include/c++/14/new: In member function ‘relocate’: /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In member function ‘getSpeciesChanges’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptions.cpp: In function ‘init’: /builddir/build/BUILD/COPASI-Build-284/copasi/commandline/COptions.cpp:73:44: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 73 | std::string * Utf8 = new std::string[argc]; | ^ /usr/include/c++/14/new:133:26: note: in a call to allocation function ‘operator new []’ declared here 133 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMSpeciesDM.cpp: In member function ‘data’: /builddir/build/BUILD/COPASI-Build-284/copasi/UI/CQEFMSpeciesDM.cpp:70:10: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 70 | QVariant CQEFMSpeciesDM::data(const QModelIndex &index, int role) const | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' [100%] Built target CopasiUI gmake[1]: Leaving directory '/builddir/build/BUILD/COPASI-Build-284' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/COPASI-Build-284/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.hAEDpW + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le ++ dirname /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd COPASI-Build-284 + DESTDIR=/builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le + /usr/bin/cmake --install . -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib64/python3.12/site-packages/copasi/_COPASI.so -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib64/python3.12/site-packages/copasi.pth -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib64/python3.12/site-packages/copasi/COPASI.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib64/python3.12/site-packages/copasi/examples/add_optitems.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib64/python3.12/site-packages/copasi/examples/checkModel.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib64/python3.12/site-packages/copasi/examples/custom_output.py -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib64/python3.12/site-packages/copasi/examples/example1.py -- Installing: 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/builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/doc/html/figures/ReactionOverviewEmpty.png -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/doc/html/figures/ReportDefinitionDialog.png -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/doc/html/figures/TimeCourseDialog.png -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/CircadianClock.cps -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/DimericMWC-stiff.cps -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/Genetic-2000Elo.xml -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/MAPK-HF96-layout.cps -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/Metabolism-2000Poo.xml -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/NF-kappaB-model.xml -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/NF-kappaB.cps -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/NF-kappaB.sedml -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/Olsen2003_peroxidase.cps -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/YeastGlycolysis.gps -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/brusselator-model.xml -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/brusselator.cps -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/brusselator.sedml -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/oscli.xml -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/examples/scan.sedml -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/icons/copasi/icons/Copasi.ico -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/icons/copasi/icons/CopasiDoc.ico -- Installing: /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/copasi/config/MIRIAMResources.xml + rm -rf /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib64/python3.12/site-packages/copasi/examples + install -pm 644 copasi/UI/icons/Copasi48-Alpha.xpm /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/icons/copasi/icons + mkdir -p /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/applications + cat + mkdir -p /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/metainfo + install -pm 644 /builddir/build/SOURCES/COPASI.appdata.xml /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/metainfo/ + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.42.284-5.fc40 --unique-debug-suffix -4.42.284-5.fc40.ppc64le --unique-debug-src-base COPASI-4.42.284-5.fc40.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/COPASI-Build-284 find-debuginfo: starting Extracting debug info from 4 files DWARF-compressing 4 files sepdebugcrcfix: Updated 4 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/COPASI-4.42.284-5.fc40.ppc64le cpio: copasi/CChemEqParser.ypp: Cannot stat: No such file or directory cpio: copasi/CChemEqParser_lex.cpp: Cannot stat: No such file or directory cpio: copasi/CChemEqParser_yacc.cpp: Cannot stat: No such file or directory cpio: copasi/CEvaluationParser.ypp: Cannot stat: No such file or directory cpio: copasi/CEvaluationParser_yacc.cpp: Cannot stat: No such file or directory cpio: copasi/CUnitParser.ypp: Cannot stat: No such file or directory cpio: copasi/CUnitParser_lex.cpp: Cannot stat: No such file or directory cpio: copasi/CUnitParser_yacc.cpp: Cannot stat: No such file or directory 61495 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/COPASI-4.42.284-5.fc40.ppc64le/copasi/odepack++/CRadau5.h is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.m4nykk + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd COPASI-Build-284 + desktop-file-validate /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/applications/COPASI.desktop + appstream-util validate-relax --nonet /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/metainfo/COPASI.appdata.xml /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/metainfo/COPASI.appdata.xml: OK + RPM_EC=0 ++ jobs -p + exit 0 Processing files: COPASI-4.42.284-5.fc40.ppc64le Provides: COPASI = 4.42.284-5.fc40 COPASI(ppc-64) = 4.42.284-5.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libCombine.so.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrossguid2.so.0()(64bit) libexpat.so.1()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Obsoletes: COPASI-sharp < 0:4.25.213-1 R-COPASI < 0:4.25.213-1 perl-COPASI < 0:4.25.213-1 Processing files: COPASI-gui-4.42.284-5.fc40.ppc64le Provides: COPASI-gui = 4.42.284-5.fc40 COPASI-gui(ppc-64) = 4.42.284-5.fc40 application() application(COPASI.desktop) metainfo() metainfo(COPASI.appdata.xml) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libCombine.so.0()(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5DataVisualization.so.5()(64bit) libQt5DataVisualization.so.5(Qt_5)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5PrintSupport.so.5()(64bit) libQt5PrintSupport.so.5(Qt_5)(64bit) libQt5Svg.so.5()(64bit) libQt5Svg.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libQt5Xml.so.5()(64bit) libQt5Xml.so.5(Qt_5)(64bit) libSBW.so.2.12()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrossguid2.so.0()(64bit) libexpat.so.1()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmml.so.2()(64bit) libqcustomplot-qt5.so.2()(64bit) libqwt-qt5.so.6.2()(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: COPASI-data-4.42.284-5.fc40.noarch Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.0k9R3I + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-284 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/licenses/COPASI + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/licenses/COPASI + cp -pr /builddir/build/BUILD/COPASI-Build-284/copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/licenses/COPASI + RPM_EC=0 ++ jobs -p + exit 0 Provides: COPASI-data = 4.42.284-5.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-COPASI-4.42.284-5.fc40.ppc64le Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.cNO08l + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-284 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/licenses/COPASI + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/licenses/COPASI + cp -pr /builddir/build/BUILD/COPASI-Build-284/copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/licenses/COPASI + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-COPASI = 4.42.284-5.fc40 python3-COPASI = 4.42.284-5.fc40 python3-COPASI(ppc-64) = 4.42.284-5.fc40 python3.12-COPASI = 4.42.284-5.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libCombine.so.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrossguid2.so.0()(64bit) libexpat.so.1()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libpython3.12.so.1.0()(64bit) libraptor.so.1()(64bit) libsbml.so.5()(64bit) libsedml.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-COPASI < 4.42.284-5.fc40 python2-COPASI < 0:4.25.213-1 Processing files: COPASI-doc-4.42.284-5.fc40.noarch Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.U64K46 + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-284 + LICENSEDIR=/builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/licenses/COPASI + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/licenses/COPASI + cp -pr /builddir/build/BUILD/COPASI-Build-284/copasi/ArtisticLicense.txt /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le/usr/share/licenses/COPASI + RPM_EC=0 ++ jobs -p + exit 0 Provides: COPASI-doc = 4.42.284-5.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: COPASI-debugsource-4.42.284-5.fc40.ppc64le Provides: COPASI-debugsource = 4.42.284-5.fc40 COPASI-debugsource(ppc-64) = 4.42.284-5.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: COPASI-debuginfo-4.42.284-5.fc40.ppc64le Provides: COPASI-debuginfo = 4.42.284-5.fc40 COPASI-debuginfo(ppc-64) = 4.42.284-5.fc40 debuginfo(build-id) = 194282da1203d056985a7f8ddfdfc47edc1da11f Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.42.284-5.fc40 Processing files: COPASI-gui-debuginfo-4.42.284-5.fc40.ppc64le Provides: COPASI-gui-debuginfo = 4.42.284-5.fc40 COPASI-gui-debuginfo(ppc-64) = 4.42.284-5.fc40 debuginfo(build-id) = 1f4d3317e6160fd1f112eea222d72b98b53d0e54 debuginfo(build-id) = 7c89455c29f53df29ff399ba0ee6f562ad21beaa Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.42.284-5.fc40 Processing files: python3-COPASI-debuginfo-4.42.284-5.fc40.ppc64le Provides: debuginfo(build-id) = 9ead9ea3172f5a6640abbf8b5f5313bb0070521e python-COPASI-debuginfo = 4.42.284-5.fc40 python3-COPASI-debuginfo = 4.42.284-5.fc40 python3-COPASI-debuginfo(ppc-64) = 4.42.284-5.fc40 python3.12-COPASI-debuginfo = 4.42.284-5.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: COPASI-debugsource(ppc-64) = 4.42.284-5.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le Wrote: /builddir/build/RPMS/python3-COPASI-debuginfo-4.42.284-5.fc40.ppc64le.rpm Wrote: /builddir/build/RPMS/COPASI-debuginfo-4.42.284-5.fc40.ppc64le.rpm Wrote: /builddir/build/RPMS/COPASI-gui-debuginfo-4.42.284-5.fc40.ppc64le.rpm Wrote: /builddir/build/RPMS/COPASI-gui-4.42.284-5.fc40.ppc64le.rpm Wrote: /builddir/build/RPMS/COPASI-debugsource-4.42.284-5.fc40.ppc64le.rpm Wrote: /builddir/build/RPMS/COPASI-4.42.284-5.fc40.ppc64le.rpm Wrote: /builddir/build/RPMS/COPASI-data-4.42.284-5.fc40.noarch.rpm Wrote: /builddir/build/RPMS/COPASI-doc-4.42.284-5.fc40.noarch.rpm Wrote: /builddir/build/RPMS/python3-COPASI-4.42.284-5.fc40.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.0IWr3W + umask 022 + cd /builddir/build/BUILD + cd COPASI-Build-284 + /usr/bin/rm -rf /builddir/build/BUILDROOT/COPASI-4.42.284-5.fc40.ppc64le + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.iw84W7 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/COPASI-Build-284-SPECPARTS + rm -rf COPASI-Build-284 COPASI-Build-284.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild COPASI-4.42.284-5.fc40.src.rpm Finish: build phase for COPASI-4.42.284-5.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-ppc64le-1705956496.802490/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-ppc64le-1705956496.802490/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-ppc64le-1705956496.802490/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/COPASI-4.42.284-5.fc40.src.rpm) Config(child) 56 minutes 58 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "COPASI-doc", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "noarch" }, { "name": "COPASI-gui-debuginfo", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "ppc64le" }, { "name": "COPASI", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "src" }, { "name": "COPASI", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "ppc64le" }, { "name": "COPASI-debugsource", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "ppc64le" }, { "name": "COPASI-debuginfo", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "ppc64le" }, { "name": "python3-COPASI-debuginfo", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "ppc64le" }, { "name": "python3-COPASI", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "ppc64le" }, { "name": "COPASI-data", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "noarch" }, { "name": "COPASI-gui", "epoch": null, "version": "4.42.284", "release": "5.fc40", "arch": "ppc64le" } ] } RPMResults finished