Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c2a0' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7508323-fedora-39-ppc64le --chroot fedora-39-ppc64le


Version: 0.73
PID: 6604
Logging PID: 6605
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 7508323,
 'buildroot_pkgs': [],
 'chroot': 'fedora-39-ppc64le',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '5c68f6a9db36083946686b5cb383a461971aec92',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-19',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-39-ppc64le/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/churchyard',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'https://src.fedoraproject.org/user/churchyard',
 'tags': [],
 'task_id': '7508323-fedora-39-ppc64le',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq /var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq'...

Running: git checkout 5c68f6a9db36083946686b5cb383a461971aec92 --

cmd: ['git', 'checkout', '5c68f6a9db36083946686b5cb383a461971aec92', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq
rc: 0
stdout: 
stderr: Note: switching to '5c68f6a9db36083946686b5cb383a461971aec92'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 5c68f6a automatic import of mmseq

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  18.3M      0 --:--:-- --:--:-- --:--:-- 18.3M
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717077957.465238 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717077957.465238 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq/mmseq.spec)  Config(fedora-39-ppc64le)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-39-ppc64le-bootstrap-1717077957.465238/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39
INFO: Pulling image: registry.fedoraproject.org/fedora:39
INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-ppc64le-bootstrap-1717077957.465238/root
INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount
INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/642c0be096b7797c3361b4fe050d6181805fa82e93d016124da8500379c69d62/merged
INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/642c0be096b7797c3361b4fe050d6181805fa82e93d016124da8500379c69d62/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  33 MB/s |  16 MB     00:00    
Additional repo http_kojipkgs_fedoraproject_org  50 MB/s |  73 MB     00:01    
fedora                                           10 MB/s |  83 MB     00:08    
updates                                          11 MB/s |  35 MB     00:03    
Last metadata expiration check: 0:00:06 ago on Thu May 30 14:07:53 2024.
Package python3-dnf-4.19.2-1.fc39.noarch is already installed.
Dependencies resolved.
==========================================================================================================================
 Package                    Arch     Version          Repository                                                      Size
==========================================================================================================================
Installing:
 dnf5                       ppc64le  5.2.2.0-1.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  682 k
     replacing  dnf.noarch 4.19.2-1.fc39
     replacing  yum.noarch 4.19.2-1.fc39
 python3-dnf-plugins-core   noarch   4.7.0-1.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  302 k
Upgrading:
 dnf-data                   noarch   4.20.0-1.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   39 k
 libstdc++                  ppc64le  14.1.1-4.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.0 M
 python3-dnf                noarch   4.20.0-1.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  580 k
Installing dependencies:
 dbus-libs                  ppc64le  1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  176 k
 fmt                        ppc64le  10.2.1-4.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  147 k
 libdnf5                    ppc64le  5.2.2.0-1.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.0 M
 libdnf5-cli                ppc64le  5.2.2.0-1.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  312 k
 python3-dateutil           noarch   1:2.8.2-13.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  345 k
 python3-dbus               ppc64le  1.3.2-6.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  149 k
 python3-distro             noarch   1.9.0-3.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   45 k
 python3-six                noarch   1.16.0-14.fc40   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   41 k
 python3-systemd            ppc64le  235-9.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  101 k
 sdbus-cpp                  ppc64le  1.5.0-2.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  109 k

Transaction Summary
==========================================================================================================================
Install  12 Packages
Upgrade   3 Packages

Total download size: 5.0 M
Downloading Packages:
(1/15): dbus-libs-1.14.10-3.fc40.ppc64le.rpm    1.6 MB/s | 176 kB     00:00    
(2/15): fmt-10.2.1-4.fc41.ppc64le.rpm           1.2 MB/s | 147 kB     00:00    
(3/15): dnf5-5.2.2.0-1.fc41.ppc64le.rpm         4.5 MB/s | 682 kB     00:00    
(4/15): libdnf5-5.2.2.0-1.fc41.ppc64le.rpm       20 MB/s | 1.0 MB     00:00    
(5/15): libdnf5-cli-5.2.2.0-1.fc41.ppc64le.rpm  7.6 MB/s | 312 kB     00:00    
(6/15): python3-dateutil-2.8.2-13.fc40.noarch.r  11 MB/s | 345 kB     00:00    
(7/15): python3-dbus-1.3.2-6.fc40.ppc64le.rpm   6.3 MB/s | 149 kB     00:00    
(8/15): python3-distro-1.9.0-3.fc40.noarch.rpm  1.9 MB/s |  45 kB     00:00    
(9/15): python3-dnf-plugins-core-4.7.0-1.fc41.n 9.9 MB/s | 302 kB     00:00    
(10/15): python3-six-1.16.0-14.fc40.noarch.rpm  1.5 MB/s |  41 kB     00:00    
(11/15): python3-systemd-235-9.fc40.ppc64le.rpm 4.0 MB/s | 101 kB     00:00    
(12/15): dnf-data-4.20.0-1.fc41.noarch.rpm      1.8 MB/s |  39 kB     00:00    
(13/15): sdbus-cpp-1.5.0-2.fc41.ppc64le.rpm     3.9 MB/s | 109 kB     00:00    
(14/15): libstdc++-14.1.1-4.fc41.ppc64le.rpm     20 MB/s | 1.0 MB     00:00    
(15/15): python3-dnf-4.20.0-1.fc41.noarch.rpm    17 MB/s | 580 kB     00:00    
--------------------------------------------------------------------------------
Total                                            18 MB/s | 5.0 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Upgrading        : libstdc++-14.1.1-4.fc41.ppc64le                       1/20 
  Installing       : fmt-10.2.1-4.fc41.ppc64le                             2/20 
  Installing       : libdnf5-5.2.2.0-1.fc41.ppc64le                        3/20 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : libdnf5-cli-5.2.2.0-1.fc41.ppc64le                    4/20 
  Upgrading        : dnf-data-4.20.0-1.fc41.noarch                         5/20 
  Upgrading        : python3-dnf-4.20.0-1.fc41.noarch                      6/20 
  Installing       : sdbus-cpp-1.5.0-2.fc41.ppc64le                        7/20 
  Installing       : python3-systemd-235-9.fc40.ppc64le                    8/20 
  Installing       : python3-six-1.16.0-14.fc40.noarch                     9/20 
  Installing       : python3-dateutil-1:2.8.2-13.fc40.noarch              10/20 
  Installing       : python3-distro-1.9.0-3.fc40.noarch                   11/20 
  Installing       : dbus-libs-1:1.14.10-3.fc40.ppc64le                   12/20 
  Installing       : python3-dbus-1.3.2-6.fc40.ppc64le                    13/20 
  Installing       : python3-dnf-plugins-core-4.7.0-1.fc41.noarch         14/20 
  Installing       : dnf5-5.2.2.0-1.fc41.ppc64le                          15/20 
  Obsoleting       : yum-4.19.2-1.fc39.noarch                             16/20 
  Running scriptlet: dnf-4.19.2-1.fc39.noarch                             17/20 
  Obsoleting       : dnf-4.19.2-1.fc39.noarch                             17/20 
warning: directory /var/cache/dnf: remove failed: Device or resource busy

  Running scriptlet: dnf-4.19.2-1.fc39.noarch                             17/20 
  Cleanup          : python3-dnf-4.19.2-1.fc39.noarch                     18/20 
  Cleanup          : dnf-data-4.19.2-1.fc39.noarch                        19/20 
  Cleanup          : libstdc++-13.3.1-1.fc39.ppc64le                      20/20 
  Running scriptlet: libstdc++-13.3.1-1.fc39.ppc64le                      20/20 
  Verifying        : dbus-libs-1:1.14.10-3.fc40.ppc64le                    1/20 
  Verifying        : dnf5-5.2.2.0-1.fc41.ppc64le                           2/20 
  Verifying        : dnf-4.19.2-1.fc39.noarch                              3/20 
  Verifying        : yum-4.19.2-1.fc39.noarch                              4/20 
  Verifying        : fmt-10.2.1-4.fc41.ppc64le                             5/20 
  Verifying        : libdnf5-5.2.2.0-1.fc41.ppc64le                        6/20 
  Verifying        : libdnf5-cli-5.2.2.0-1.fc41.ppc64le                    7/20 
  Verifying        : python3-dateutil-1:2.8.2-13.fc40.noarch               8/20 
  Verifying        : python3-dbus-1.3.2-6.fc40.ppc64le                     9/20 
  Verifying        : python3-distro-1.9.0-3.fc40.noarch                   10/20 
  Verifying        : python3-dnf-plugins-core-4.7.0-1.fc41.noarch         11/20 
  Verifying        : python3-six-1.16.0-14.fc40.noarch                    12/20 
  Verifying        : python3-systemd-235-9.fc40.ppc64le                   13/20 
  Verifying        : sdbus-cpp-1.5.0-2.fc41.ppc64le                       14/20 
  Verifying        : dnf-data-4.20.0-1.fc41.noarch                        15/20 
  Verifying        : dnf-data-4.19.2-1.fc39.noarch                        16/20 
  Verifying        : libstdc++-14.1.1-4.fc41.ppc64le                      17/20 
  Verifying        : libstdc++-13.3.1-1.fc39.ppc64le                      18/20 
  Verifying        : python3-dnf-4.20.0-1.fc41.noarch                     19/20 
  Verifying        : python3-dnf-4.19.2-1.fc39.noarch                     20/20 

Upgraded:
  dnf-data-4.20.0-1.fc41.noarch           libstdc++-14.1.1-4.fc41.ppc64le       
  python3-dnf-4.20.0-1.fc41.noarch       
Installed:
  dbus-libs-1:1.14.10-3.fc40.ppc64le                                            
  dnf5-5.2.2.0-1.fc41.ppc64le                                                   
  fmt-10.2.1-4.fc41.ppc64le                                                     
  libdnf5-5.2.2.0-1.fc41.ppc64le                                                
  libdnf5-cli-5.2.2.0-1.fc41.ppc64le                                            
  python3-dateutil-1:2.8.2-13.fc40.noarch                                       
  python3-dbus-1.3.2-6.fc40.ppc64le                                             
  python3-distro-1.9.0-3.fc40.noarch                                            
  python3-dnf-plugins-core-4.7.0-1.fc41.noarch                                  
  python3-six-1.16.0-14.fc40.noarch                                             
  python3-systemd-235-9.fc40.ppc64le                                            
  sdbus-cpp-1.5.0-2.fc41.ppc64le                                                

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-39-ppc64le-1717077957.465238/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc39.ppc64le
  rpm-sequoia-1.6.0-1.fc39.ppc64le
  python3-dnf-4.20.0-1.fc41.noarch
  python3-dnf-plugins-core-4.7.0-1.fc41.noarch
  dnf5-5.2.2.0-1.fc41.ppc64le
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  25 MB/s |  16 MB     00:00    
Additional repo http_kojipkgs_fedoraproject_org  60 MB/s |  73 MB     00:01    
fedora                                           11 MB/s |  83 MB     00:07    
updates                                          10 MB/s |  35 MB     00:03    
Last metadata expiration check: 0:00:12 ago on Thu May 30 14:10:37 2024.
Dependencies resolved.
=============================================================================================================================================
 Package                             Arch     Version                    Repository                                                      Size
=============================================================================================================================================
Installing group/module packages:
 bash                                ppc64le  5.2.26-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.9 M
 bzip2                               ppc64le  1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   53 k
 coreutils                           ppc64le  9.5-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.4 M
 cpio                                ppc64le  2.15-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  293 k
 diffutils                           ppc64le  3.10-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  410 k
 fedora-release-common               noarch   41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 findutils                           ppc64le  1:4.9.0-8.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  533 k
 gawk                                ppc64le  5.3.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.1 M
 glibc-minimal-langpack              ppc64le  2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  112 k
 grep                                ppc64le  3.11-8.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  299 k
 gzip                                ppc64le  1.13-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  168 k
 info                                ppc64le  7.1-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  201 k
 patch                               ppc64le  2.7.6-24.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  142 k
 redhat-rpm-config                   noarch   291-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   76 k
 rpm-build                           ppc64le  4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   77 k
 sed                                 ppc64le  4.9-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  314 k
 shadow-utils                        ppc64le  2:4.15.1-5.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.3 M
 tar                                 ppc64le  2:1.35-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  874 k
 unzip                               ppc64le  6.0-63.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  191 k
 util-linux                          ppc64le  2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.3 M
 which                               ppc64le  2.21-41.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   43 k
 xz                                  ppc64le  1:5.4.6-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  535 k
Installing dependencies:
 add-determinism-nopython            ppc64le  0.2.0-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  894 k
 alternatives                        ppc64le  1.27-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   43 k
 ansible-srpm-macros                 noarch   1-15.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   21 k
 audit-libs                          ppc64le  4.0.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  142 k
 authselect                          ppc64le  1.5.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  142 k
 authselect-libs                     ppc64le  1.5.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  210 k
 basesystem                          noarch   11-20.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  7.2 k
 binutils                            ppc64le  2.42.50-11.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  6.5 M
 binutils-gold                       ppc64le  2.42.50-11.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.1 M
 build-reproducibility-srpm-macros   noarch   0.2.0-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.1 k
 bzip2-libs                          ppc64le  1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   47 k
 ca-certificates                     noarch   2023.2.62_v7.0.401-6.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  862 k
 coreutils-common                    ppc64le  9.5-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.1 M
 cracklib                            ppc64le  2.9.11-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   84 k
 crypto-policies                     noarch   20240521-1.gitf71d135.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   65 k
 curl                                ppc64le  8.8.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  307 k
 cyrus-sasl-lib                      ppc64le  2.1.28-22.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  883 k
 debugedit                           ppc64le  5.0-16.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   82 k
 dwz                                 ppc64le  0.15-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  144 k
 ed                                  ppc64le  1.20.2-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   85 k
 efi-srpm-macros                     noarch   5-11.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 elfutils                            ppc64le  0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  557 k
 elfutils-debuginfod-client          ppc64le  0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   40 k
 elfutils-default-yama-scope         noarch   0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 elfutils-libelf                     ppc64le  0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  218 k
 elfutils-libs                       ppc64le  0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  296 k
 fedora-gpg-keys                     noarch   41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  122 k
 fedora-release                      noarch   41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   11 k
 fedora-release-identity-basic       noarch   41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 k
 fedora-repos                        noarch   41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.3 k
 fedora-repos-rawhide                noarch   41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.9 k
 file                                ppc64le  5.45-5.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   50 k
 file-libs                           ppc64le  5.45-5.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  775 k
 filesystem                          ppc64le  3.18-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.1 M
 fonts-srpm-macros                   noarch   1:2.0.5-14.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   27 k
 forge-srpm-macros                   noarch   0.3.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   19 k
 fpc-srpm-macros                     noarch   1.3-12.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  7.8 k
 gdb-minimal                         ppc64le  14.2-9.fc41                copr_base                                                      4.3 M
 gdbm                                ppc64le  1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  154 k
 gdbm-libs                           ppc64le  1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   62 k
 ghc-srpm-macros                     noarch   1.9.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.0 k
 glibc                               ppc64le  2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  3.5 M
 glibc-common                        ppc64le  2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  407 k
 glibc-gconv-extra                   ppc64le  2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.0 M
 gmp                                 ppc64le  1:6.3.0-1.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  309 k
 gnat-srpm-macros                    noarch   6-5.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.8 k
 go-srpm-macros                      noarch   3.6.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   28 k
 jansson                             ppc64le  2.13.1-9.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   50 k
 kernel-srpm-macros                  noarch   1.0-23.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.8 k
 keyutils-libs                       ppc64le  1.6.3-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   33 k
 krb5-libs                           ppc64le  1.21.2-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  838 k
 libacl                              ppc64le  2.3.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   27 k
 libarchive                          ppc64le  3.7.4-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  476 k
 libattr                             ppc64le  2.5.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   19 k
 libblkid                            ppc64le  2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  141 k
 libbrotli                           ppc64le  1.1.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  384 k
 libcap                              ppc64le  2.70-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   93 k
 libcap-ng                           ppc64le  0.8.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   34 k
 libcom_err                          ppc64le  1.47.0-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   26 k
 libcurl                             ppc64le  8.8.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  394 k
 libeconf                            ppc64le  0.6.2-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   36 k
 libevent                            ppc64le  2.1.12-13.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  275 k
 libfdisk                            ppc64le  2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  176 k
 libffi                              ppc64le  3.4.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   38 k
 libgcc                              ppc64le  14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  109 k
 libgomp                             ppc64le  14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  363 k
 libidn2                             ppc64le  2.3.7-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  115 k
 libmount                            ppc64le  2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  177 k
 libnghttp2                          ppc64le  1.62.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   86 k
 libnsl2                             ppc64le  2.0.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   32 k
 libpkgconf                          ppc64le  2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   43 k
 libpsl                              ppc64le  0.21.5-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   66 k
 libpwquality                        ppc64le  1.4.5-9.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  112 k
 librtas                             ppc64le  2.0.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   81 k
 libselinux                          ppc64le  3.6-4.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  100 k
 libsemanage                         ppc64le  3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  128 k
 libsepol                            ppc64le  3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  372 k
 libsmartcols                        ppc64le  2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  110 k
 libssh                              ppc64le  0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  240 k
 libssh-config                       noarch   0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.1 k
 libstdc++                           ppc64le  14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.0 M
 libtasn1                            ppc64le  4.19.0-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   79 k
 libtirpc                            ppc64le  1.3.4-1.rc3.fc41           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  107 k
 libtool-ltdl                        ppc64le  2.4.7-10.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   40 k
 libunistring                        ppc64le  1.1-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  575 k
 libutempter                         ppc64le  1.2.1-13.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   27 k
 libuuid                             ppc64le  2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   30 k
 libverto                            ppc64le  0.3.2-8.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 libxcrypt                           ppc64le  4.4.36-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  130 k
 libxml2                             ppc64le  2.12.7-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  767 k
 libzstd                             ppc64le  1.5.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  334 k
 lua-libs                            ppc64le  5.4.6-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  149 k
 lua-srpm-macros                     noarch   1-13.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.7 k
 lz4-libs                            ppc64le  1.9.4-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   86 k
 mpfr                                ppc64le  4.2.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  355 k
 ncurses-base                        noarch   6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   64 k
 ncurses-libs                        ppc64le  6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  378 k
 ocaml-srpm-macros                   noarch   10-1.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.0 k
 openblas-srpm-macros                noarch   2-17.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  7.7 k
 openldap                            ppc64le  2.6.8-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  287 k
 openssl-libs                        ppc64le  1:3.2.1-6.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.5 M
 p11-kit                             ppc64le  0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  479 k
 p11-kit-trust                       ppc64le  0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  148 k
 package-notes-srpm-macros           noarch   0.5-11.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.9 k
 pam                                 ppc64le  1.6.1-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  562 k
 pam-libs                            ppc64le  1.6.1-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   63 k
 pcre2                               ppc64le  10.43-2.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  252 k
 pcre2-syntax                        noarch   10.43-2.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  149 k
 perl-srpm-macros                    noarch   1-53.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.4 k
 pkgconf                             ppc64le  2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   44 k
 pkgconf-m4                          noarch   2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 pkgconf-pkg-config                  ppc64le  2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.8 k
 popt                                ppc64le  1.19-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   64 k
 publicsuffix-list-dafsa             noarch   20240107-3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   58 k
 pyproject-srpm-macros               noarch   1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 python-srpm-macros                  noarch   3.12-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   24 k
 qt5-srpm-macros                     noarch   5.15.13-1.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.5 k
 qt6-srpm-macros                     noarch   6.7.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.9 k
 readline                            ppc64le  8.2-8.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  230 k
 rpm                                 ppc64le  4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  522 k
 rpm-build-libs                      ppc64le  4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  106 k
 rpm-libs                            ppc64le  4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  352 k
 rpm-sequoia                         ppc64le  1.6.0-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  930 k
 rust-srpm-macros                    noarch   26.3-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 setup                               noarch   2.15.0-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  148 k
 sqlite-libs                         ppc64le  3.45.3-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  818 k
 systemd-libs                        ppc64le  256~rc3-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  775 k
 util-linux-core                     ppc64le  2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  564 k
 xxhash-libs                         ppc64le  0.8.2-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   37 k
 xz-libs                             ppc64le  1:5.4.6-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  122 k
 zig-srpm-macros                     noarch   1-2.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.0 k
 zip                                 ppc64le  3.0-40.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  274 k
 zlib-ng-compat                      ppc64le  2.1.6-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   79 k
 zstd                                ppc64le  1.5.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  502 k
Installing Groups:
 Buildsystem building group                                                                                                                  

Transaction Summary
=============================================================================================================================================
Install  156 Packages

Total download size: 58 M
Installed size: 330 M
Downloading Packages:
(1/156): alternatives-1.27-1.fc41.ppc64le.rpm   219 kB/s |  43 kB     00:00    
(2/156): ansible-srpm-macros-1-15.fc41.noarch.r 594 kB/s |  21 kB     00:00    
(3/156): add-determinism-nopython-0.2.0-9.fc41. 3.5 MB/s | 894 kB     00:00    
(4/156): authselect-1.5.0-5.fc41.ppc64le.rpm    5.8 MB/s | 142 kB     00:00    
(5/156): audit-libs-4.0.1-2.fc41.ppc64le.rpm    3.2 MB/s | 142 kB     00:00    
(6/156): gdb-minimal-14.2-9.fc41.ppc64le.rpm     13 MB/s | 4.3 MB     00:00    
(7/156): basesystem-11-20.fc40.noarch.rpm       124 kB/s | 7.2 kB     00:00    
(8/156): authselect-libs-1.5.0-5.fc41.ppc64le.r 2.7 MB/s | 210 kB     00:00    
(9/156): binutils-gold-2.42.50-11.fc41.ppc64le.  17 MB/s | 1.1 MB     00:00    
(10/156): binutils-2.42.50-11.fc41.ppc64le.rpm   38 MB/s | 6.5 MB     00:00    
(11/156): build-reproducibility-srpm-macros-0.2  99 kB/s | 9.1 kB     00:00    
(12/156): bash-5.2.26-3.fc40.ppc64le.rpm        8.8 MB/s | 1.9 MB     00:00    
(13/156): bzip2-1.0.8-18.fc40.ppc64le.rpm       1.4 MB/s |  53 kB     00:00    
(14/156): bzip2-libs-1.0.8-18.fc40.ppc64le.rpm  1.2 MB/s |  47 kB     00:00    
(15/156): ca-certificates-2023.2.62_v7.0.401-6.  22 MB/s | 862 kB     00:00    
(16/156): coreutils-9.5-1.fc41.ppc64le.rpm       21 MB/s | 1.4 MB     00:00    
(17/156): coreutils-common-9.5-1.fc41.ppc64le.r  22 MB/s | 2.1 MB     00:00    
(18/156): cpio-2.15-1.fc40.ppc64le.rpm          5.0 MB/s | 293 kB     00:00    
(19/156): cracklib-2.9.11-5.fc40.ppc64le.rpm    2.2 MB/s |  84 kB     00:00    
(20/156): crypto-policies-20240521-1.gitf71d135 2.5 MB/s |  65 kB     00:00    
(21/156): curl-8.8.0-1.fc41.ppc64le.rpm         9.9 MB/s | 307 kB     00:00    
(22/156): cyrus-sasl-lib-2.1.28-22.fc41.ppc64le  22 MB/s | 883 kB     00:00    
(23/156): debugedit-5.0-16.fc41.ppc64le.rpm     3.0 MB/s |  82 kB     00:00    
(24/156): diffutils-3.10-5.fc40.ppc64le.rpm      13 MB/s | 410 kB     00:00    
(25/156): ed-1.20.2-1.fc41.ppc64le.rpm          3.7 MB/s |  85 kB     00:00    
(26/156): dwz-0.15-6.fc40.ppc64le.rpm           4.7 MB/s | 144 kB     00:00    
(27/156): efi-srpm-macros-5-11.fc40.noarch.rpm  898 kB/s |  22 kB     00:00    
(28/156): elfutils-debuginfod-client-0.191-7.fc 1.4 MB/s |  40 kB     00:00    
(29/156): elfutils-0.191-7.fc41.ppc64le.rpm      13 MB/s | 557 kB     00:00    
(30/156): elfutils-default-yama-scope-0.191-7.f 516 kB/s |  13 kB     00:00    
(31/156): elfutils-libelf-0.191-7.fc41.ppc64le. 8.5 MB/s | 218 kB     00:00    
(32/156): elfutils-libs-0.191-7.fc41.ppc64le.rp  11 MB/s | 296 kB     00:00    
(33/156): fedora-gpg-keys-41-0.2.noarch.rpm     3.7 MB/s | 122 kB     00:00    
(34/156): fedora-release-41-0.13.noarch.rpm     402 kB/s |  11 kB     00:00    
(35/156): fedora-release-identity-basic-41-0.13 399 kB/s |  12 kB     00:00    
(36/156): fedora-release-common-41-0.13.noarch. 603 kB/s |  22 kB     00:00    
(37/156): fedora-repos-41-0.2.noarch.rpm        348 kB/s | 9.3 kB     00:00    
(38/156): file-5.45-5.fc41.ppc64le.rpm          2.5 MB/s |  50 kB     00:00    
(39/156): fedora-repos-rawhide-41-0.2.noarch.rp 384 kB/s | 8.9 kB     00:00    
(40/156): file-libs-5.45-5.fc41.ppc64le.rpm      23 MB/s | 775 kB     00:00    
(41/156): filesystem-3.18-9.fc41.ppc64le.rpm     27 MB/s | 1.1 MB     00:00    
(42/156): findutils-4.9.0-8.fc40.ppc64le.rpm     12 MB/s | 533 kB     00:00    
(43/156): fonts-srpm-macros-2.0.5-14.fc40.noarc 875 kB/s |  27 kB     00:00    
(44/156): forge-srpm-macros-0.3.1-1.fc41.noarch 820 kB/s |  19 kB     00:00    
(45/156): fpc-srpm-macros-1.3-12.fc40.noarch.rp 390 kB/s | 7.8 kB     00:00    
(46/156): gawk-5.3.0-3.fc40.ppc64le.rpm          29 MB/s | 1.1 MB     00:00    
(47/156): gdbm-1.23-6.fc40.ppc64le.rpm          5.5 MB/s | 154 kB     00:00    
(48/156): gdbm-libs-1.23-6.fc40.ppc64le.rpm     2.1 MB/s |  62 kB     00:00    
(49/156): ghc-srpm-macros-1.9.1-1.fc41.noarch.r 355 kB/s | 9.0 kB     00:00    
(50/156): glibc-common-2.39.9000-18.fc41.ppc64l  14 MB/s | 407 kB     00:00    
(51/156): glibc-minimal-langpack-2.39.9000-18.f 3.8 MB/s | 112 kB     00:00    
(52/156): glibc-gconv-extra-2.39.9000-18.fc41.p  33 MB/s | 2.0 MB     00:00    
(53/156): glibc-2.39.9000-18.fc41.ppc64le.rpm    30 MB/s | 3.5 MB     00:00    
(54/156): gmp-6.3.0-1.fc41.ppc64le.rpm          5.7 MB/s | 309 kB     00:00    
(55/156): gnat-srpm-macros-6-5.fc40.noarch.rpm  214 kB/s | 8.8 kB     00:00    
(56/156): go-srpm-macros-3.6.0-1.fc41.noarch.rp 1.0 MB/s |  28 kB     00:00    
(57/156): grep-3.11-8.fc41.ppc64le.rpm           11 MB/s | 299 kB     00:00    
(58/156): gzip-1.13-1.fc40.ppc64le.rpm          6.4 MB/s | 168 kB     00:00    
(59/156): jansson-2.13.1-9.fc40.ppc64le.rpm     2.3 MB/s |  50 kB     00:00    
(60/156): info-7.1-2.fc40.ppc64le.rpm           7.3 MB/s | 201 kB     00:00    
(61/156): kernel-srpm-macros-1.0-23.fc41.noarch 430 kB/s | 9.8 kB     00:00    
(62/156): keyutils-libs-1.6.3-3.fc40.ppc64le.rp 1.5 MB/s |  33 kB     00:00    
(63/156): libacl-2.3.2-1.fc40.ppc64le.rpm       1.3 MB/s |  27 kB     00:00    
(64/156): krb5-libs-1.21.2-5.fc40.ppc64le.rpm    19 MB/s | 838 kB     00:00    
(65/156): libarchive-3.7.4-1.fc41.ppc64le.rpm    14 MB/s | 476 kB     00:00    
(66/156): libattr-2.5.2-3.fc40.ppc64le.rpm      644 kB/s |  19 kB     00:00    
(67/156): libblkid-2.40.1-1.fc41.ppc64le.rpm    6.0 MB/s | 141 kB     00:00    
(68/156): libbrotli-1.1.0-3.fc40.ppc64le.rpm     14 MB/s | 384 kB     00:00    
(69/156): libcap-2.70-1.fc41.ppc64le.rpm        4.1 MB/s |  93 kB     00:00    
(70/156): libcap-ng-0.8.5-1.fc41.ppc64le.rpm    1.3 MB/s |  34 kB     00:00    
(71/156): libcom_err-1.47.0-5.fc40.ppc64le.rpm  1.2 MB/s |  26 kB     00:00    
(72/156): libcurl-8.8.0-1.fc41.ppc64le.rpm       12 MB/s | 394 kB     00:00    
(73/156): libeconf-0.6.2-2.fc41.ppc64le.rpm     1.7 MB/s |  36 kB     00:00    
(74/156): libevent-2.1.12-13.fc41.ppc64le.rpm   9.4 MB/s | 275 kB     00:00    
(75/156): libfdisk-2.40.1-1.fc41.ppc64le.rpm    7.4 MB/s | 176 kB     00:00    
(76/156): libffi-3.4.6-1.fc41.ppc64le.rpm       1.6 MB/s |  38 kB     00:00    
(77/156): libgcc-14.1.1-4.fc41.ppc64le.rpm      4.9 MB/s | 109 kB     00:00    
(78/156): libgomp-14.1.1-4.fc41.ppc64le.rpm      14 MB/s | 363 kB     00:00    
(79/156): libidn2-2.3.7-1.fc40.ppc64le.rpm      4.3 MB/s | 115 kB     00:00    
(80/156): libmount-2.40.1-1.fc41.ppc64le.rpm    6.4 MB/s | 177 kB     00:00    
(81/156): libnghttp2-1.62.0-1.fc41.ppc64le.rpm  3.5 MB/s |  86 kB     00:00    
(82/156): libnsl2-2.0.1-1.fc40.ppc64le.rpm      1.2 MB/s |  32 kB     00:00    
(83/156): libpkgconf-2.1.1-1.fc41.ppc64le.rpm   1.9 MB/s |  43 kB     00:00    
(84/156): libpsl-0.21.5-3.fc40.ppc64le.rpm      3.0 MB/s |  66 kB     00:00    
(85/156): libpwquality-1.4.5-9.fc40.ppc64le.rpm 4.4 MB/s | 112 kB     00:00    
(86/156): librtas-2.0.6-1.fc41.ppc64le.rpm      3.6 MB/s |  81 kB     00:00    
(87/156): libselinux-3.6-4.fc40.ppc64le.rpm     4.2 MB/s | 100 kB     00:00    
(88/156): libsemanage-3.6-3.fc40.ppc64le.rpm    5.4 MB/s | 128 kB     00:00    
(89/156): libsepol-3.6-3.fc40.ppc64le.rpm        15 MB/s | 372 kB     00:00    
(90/156): libsmartcols-2.40.1-1.fc41.ppc64le.rp 4.3 MB/s | 110 kB     00:00    
(91/156): libssh-0.10.6-6.fc41.ppc64le.rpm      9.7 MB/s | 240 kB     00:00    
(92/156): libssh-config-0.10.6-6.fc41.noarch.rp 382 kB/s | 9.1 kB     00:00    
(93/156): libstdc++-14.1.1-4.fc41.ppc64le.rpm    27 MB/s | 1.0 MB     00:00    
(94/156): libtasn1-4.19.0-6.fc40.ppc64le.rpm    2.7 MB/s |  79 kB     00:00    
(95/156): libtirpc-1.3.4-1.rc3.fc41.ppc64le.rpm 4.4 MB/s | 107 kB     00:00    
(96/156): libtool-ltdl-2.4.7-10.fc40.ppc64le.rp 1.7 MB/s |  40 kB     00:00    
(97/156): libutempter-1.2.1-13.fc40.ppc64le.rpm 1.1 MB/s |  27 kB     00:00    
(98/156): libunistring-1.1-7.fc41.ppc64le.rpm    18 MB/s | 575 kB     00:00    
(99/156): libuuid-2.40.1-1.fc41.ppc64le.rpm     1.2 MB/s |  30 kB     00:00    
(100/156): libverto-0.3.2-8.fc40.ppc64le.rpm    1.0 MB/s |  22 kB     00:00    
(101/156): libxcrypt-4.4.36-5.fc40.ppc64le.rpm  4.8 MB/s | 130 kB     00:00    
(102/156): libzstd-1.5.6-1.fc41.ppc64le.rpm      14 MB/s | 334 kB     00:00    
(103/156): libxml2-2.12.7-1.fc41.ppc64le.rpm     20 MB/s | 767 kB     00:00    
(104/156): lua-libs-5.4.6-5.fc40.ppc64le.rpm    5.2 MB/s | 149 kB     00:00    
(105/156): lua-srpm-macros-1-13.fc40.noarch.rpm 404 kB/s | 8.7 kB     00:00    
(106/156): lz4-libs-1.9.4-6.fc40.ppc64le.rpm    4.1 MB/s |  86 kB     00:00    
(107/156): mpfr-4.2.1-4.fc41.ppc64le.rpm         13 MB/s | 355 kB     00:00    
(108/156): ncurses-base-6.4-12.20240127.fc40.no 3.1 MB/s |  64 kB     00:00    
(109/156): ncurses-libs-6.4-12.20240127.fc40.pp  11 MB/s | 378 kB     00:00    
(110/156): openblas-srpm-macros-2-17.fc41.noarc 343 kB/s | 7.7 kB     00:00    
(111/156): ocaml-srpm-macros-10-1.fc41.noarch.r 298 kB/s | 9.0 kB     00:00    
(112/156): openldap-2.6.8-1.fc41.ppc64le.rpm     11 MB/s | 287 kB     00:00    
(113/156): p11-kit-0.25.3-4.fc40.ppc64le.rpm     13 MB/s | 479 kB     00:00    
(114/156): openssl-libs-3.2.1-6.fc41.ppc64le.rp  32 MB/s | 2.5 MB     00:00    
(115/156): p11-kit-trust-0.25.3-4.fc40.ppc64le. 2.7 MB/s | 148 kB     00:00    
(116/156): package-notes-srpm-macros-0.5-11.fc4 221 kB/s | 9.9 kB     00:00    
(117/156): pam-1.6.1-3.fc41.ppc64le.rpm          18 MB/s | 562 kB     00:00    
(118/156): pam-libs-1.6.1-3.fc41.ppc64le.rpm    2.0 MB/s |  63 kB     00:00    
(119/156): patch-2.7.6-24.fc40.ppc64le.rpm      6.0 MB/s | 142 kB     00:00    
(120/156): perl-srpm-macros-1-53.fc40.noarch.rp 424 kB/s | 8.4 kB     00:00    
(121/156): pcre2-10.43-2.fc41.1.ppc64le.rpm     9.1 MB/s | 252 kB     00:00    
(122/156): pcre2-syntax-10.43-2.fc41.1.noarch.r 5.3 MB/s | 149 kB     00:00    
(123/156): pkgconf-m4-2.1.1-1.fc41.noarch.rpm   689 kB/s |  14 kB     00:00    
(124/156): pkgconf-2.1.1-1.fc41.ppc64le.rpm     1.7 MB/s |  44 kB     00:00    
(125/156): pkgconf-pkg-config-2.1.1-1.fc41.ppc6 470 kB/s | 9.8 kB     00:00    
(126/156): popt-1.19-6.fc40.ppc64le.rpm         2.9 MB/s |  64 kB     00:00    
(127/156): pyproject-srpm-macros-1.12.0-1.fc40. 600 kB/s |  14 kB     00:00    
(128/156): publicsuffix-list-dafsa-20240107-3.f 2.3 MB/s |  58 kB     00:00    
(129/156): python-srpm-macros-3.12-9.fc41.noarc 1.0 MB/s |  24 kB     00:00    
(130/156): qt6-srpm-macros-6.7.1-1.fc41.noarch. 387 kB/s | 8.9 kB     00:00    
(131/156): qt5-srpm-macros-5.15.13-1.fc41.noarc 325 kB/s | 8.5 kB     00:00    
(132/156): redhat-rpm-config-291-1.fc41.noarch. 3.1 MB/s |  76 kB     00:00    
(133/156): rpm-4.19.91-4.fc41.ppc64le.rpm        13 MB/s | 522 kB     00:00    
(134/156): readline-8.2-8.fc40.ppc64le.rpm      4.5 MB/s | 230 kB     00:00    
(135/156): rpm-build-4.19.91-4.fc41.ppc64le.rpm 2.4 MB/s |  77 kB     00:00    
(136/156): rpm-build-libs-4.19.91-4.fc41.ppc64l 3.9 MB/s | 106 kB     00:00    
(137/156): rpm-libs-4.19.91-4.fc41.ppc64le.rpm   12 MB/s | 352 kB     00:00    
(138/156): rpm-sequoia-1.6.0-3.fc41.ppc64le.rpm  25 MB/s | 930 kB     00:00    
(139/156): rust-srpm-macros-26.3-1.fc41.noarch. 599 kB/s |  13 kB     00:00    
(140/156): sed-4.9-1.fc40.ppc64le.rpm           9.5 MB/s | 314 kB     00:00    
(141/156): setup-2.15.0-3.fc41.noarch.rpm       5.0 MB/s | 148 kB     00:00    
(142/156): shadow-utils-4.15.1-5.fc41.ppc64le.r  28 MB/s | 1.3 MB     00:00    
(143/156): sqlite-libs-3.45.3-1.fc41.ppc64le.rp  18 MB/s | 818 kB     00:00    
(144/156): systemd-libs-256~rc3-3.fc41.ppc64le.  12 MB/s | 775 kB     00:00    
(145/156): tar-1.35-3.fc40.ppc64le.rpm           16 MB/s | 874 kB     00:00    
(146/156): unzip-6.0-63.fc40.ppc64le.rpm        4.5 MB/s | 191 kB     00:00    
(147/156): util-linux-2.40.1-1.fc41.ppc64le.rpm  33 MB/s | 1.3 MB     00:00    
(148/156): which-2.21-41.fc40.ppc64le.rpm       1.3 MB/s |  43 kB     00:00    
(149/156): util-linux-core-2.40.1-1.fc41.ppc64l  14 MB/s | 564 kB     00:00    
(150/156): xxhash-libs-0.8.2-2.fc40.ppc64le.rpm 1.8 MB/s |  37 kB     00:00    
(151/156): xz-5.4.6-3.fc41.ppc64le.rpm           15 MB/s | 535 kB     00:00    
(152/156): xz-libs-5.4.6-3.fc41.ppc64le.rpm     3.8 MB/s | 122 kB     00:00    
(153/156): zig-srpm-macros-1-2.fc40.noarch.rpm  303 kB/s | 8.0 kB     00:00    
(154/156): zip-3.0-40.fc40.ppc64le.rpm           11 MB/s | 274 kB     00:00    
(155/156): zlib-ng-compat-2.1.6-4.fc41.ppc64le. 3.2 MB/s |  79 kB     00:00    
(156/156): zstd-1.5.6-1.fc41.ppc64le.rpm         20 MB/s | 502 kB     00:00    
--------------------------------------------------------------------------------
Total                                            27 MB/s |  58 MB     00:02     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-9.fc41.ppc64le                         1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-14.1.1-4.fc41.ppc64le                         1/156 
  Running scriptlet: libgcc-14.1.1-4.fc41.ppc64le                         1/156 
  Installing       : crypto-policies-20240521-1.gitf71d135.fc41.noarc     2/156 
  Running scriptlet: crypto-policies-20240521-1.gitf71d135.fc41.noarc     2/156 
  Installing       : fedora-release-identity-basic-41-0.13.noarch         3/156 
  Installing       : fedora-repos-rawhide-41-0.2.noarch                   4/156 
  Installing       : fedora-gpg-keys-41-0.2.noarch                        5/156 
  Installing       : fedora-repos-41-0.2.noarch                           6/156 
  Installing       : fedora-release-common-41-0.13.noarch                 7/156 
  Installing       : fedora-release-41-0.13.noarch                        8/156 
  Installing       : setup-2.15.0-3.fc41.noarch                           9/156 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.15.0-3.fc41.noarch                           9/156 
  Installing       : filesystem-3.18-9.fc41.ppc64le                      10/156 
  Installing       : basesystem-11-20.fc40.noarch                        11/156 
  Installing       : rust-srpm-macros-26.3-1.fc41.noarch                 12/156 
  Installing       : qt6-srpm-macros-6.7.1-1.fc41.noarch                 13/156 
  Installing       : qt5-srpm-macros-5.15.13-1.fc41.noarch               14/156 
  Installing       : publicsuffix-list-dafsa-20240107-3.fc40.noarch      15/156 
  Installing       : pkgconf-m4-2.1.1-1.fc41.noarch                      16/156 
  Installing       : perl-srpm-macros-1-53.fc40.noarch                   17/156 
  Installing       : pcre2-syntax-10.43-2.fc41.1.noarch                  18/156 
  Installing       : package-notes-srpm-macros-0.5-11.fc40.noarch        19/156 
  Installing       : openblas-srpm-macros-2-17.fc41.noarch               20/156 
  Installing       : ocaml-srpm-macros-10-1.fc41.noarch                  21/156 
  Installing       : ncurses-base-6.4-12.20240127.fc40.noarch            22/156 
  Installing       : glibc-gconv-extra-2.39.9000-18.fc41.ppc64le         23/156 
  Running scriptlet: glibc-gconv-extra-2.39.9000-18.fc41.ppc64le         23/156 
  Installing       : glibc-minimal-langpack-2.39.9000-18.fc41.ppc64le    24/156 
  Installing       : glibc-common-2.39.9000-18.fc41.ppc64le              25/156 
  Running scriptlet: glibc-2.39.9000-18.fc41.ppc64le                     26/156 
  Installing       : glibc-2.39.9000-18.fc41.ppc64le                     26/156 
  Running scriptlet: glibc-2.39.9000-18.fc41.ppc64le                     26/156 
  Installing       : ncurses-libs-6.4-12.20240127.fc40.ppc64le           27/156 
  Installing       : bash-5.2.26-3.fc40.ppc64le                          28/156 
  Running scriptlet: bash-5.2.26-3.fc40.ppc64le                          28/156 
  Installing       : zlib-ng-compat-2.1.6-4.fc41.ppc64le                 29/156 
  Installing       : bzip2-libs-1.0.8-18.fc40.ppc64le                    30/156 
  Installing       : xz-libs-1:5.4.6-3.fc41.ppc64le                      31/156 
  Installing       : readline-8.2-8.fc40.ppc64le                         32/156 
  Installing       : libstdc++-14.1.1-4.fc41.ppc64le                     33/156 
  Installing       : libuuid-2.40.1-1.fc41.ppc64le                       34/156 
  Installing       : libzstd-1.5.6-1.fc41.ppc64le                        35/156 
  Installing       : elfutils-libelf-0.191-7.fc41.ppc64le                36/156 
  Installing       : popt-1.19-6.fc40.ppc64le                            37/156 
  Installing       : libblkid-2.40.1-1.fc41.ppc64le                      38/156 
  Installing       : gmp-1:6.3.0-1.fc41.ppc64le                          39/156 
  Installing       : libattr-2.5.2-3.fc40.ppc64le                        40/156 
  Installing       : libacl-2.3.2-1.fc40.ppc64le                         41/156 
  Installing       : libxcrypt-4.4.36-5.fc40.ppc64le                     42/156 
  Installing       : gdbm-libs-1:1.23-6.fc40.ppc64le                     43/156 
  Installing       : libeconf-0.6.2-2.fc41.ppc64le                       44/156 
  Installing       : mpfr-4.2.1-4.fc41.ppc64le                           45/156 
  Installing       : gawk-5.3.0-3.fc40.ppc64le                           46/156 
  Installing       : dwz-0.15-6.fc40.ppc64le                             47/156 
  Installing       : unzip-6.0-63.fc40.ppc64le                           48/156 
  Installing       : file-libs-5.45-5.fc41.ppc64le                       49/156 
  Installing       : file-5.45-5.fc41.ppc64le                            50/156 
  Installing       : alternatives-1.27-1.fc41.ppc64le                    51/156 
  Installing       : jansson-2.13.1-9.fc40.ppc64le                       52/156 
  Installing       : libcap-ng-0.8.5-1.fc41.ppc64le                      53/156 
  Installing       : audit-libs-4.0.1-2.fc41.ppc64le                     54/156 
  Installing       : pam-libs-1.6.1-3.fc41.ppc64le                       55/156 
  Installing       : libcap-2.70-1.fc41.ppc64le                          56/156 
  Installing       : systemd-libs-256~rc3-3.fc41.ppc64le                 57/156 
  Installing       : libcom_err-1.47.0-5.fc40.ppc64le                    58/156 
  Installing       : libsepol-3.6-3.fc40.ppc64le                         59/156 
  Installing       : libsmartcols-2.40.1-1.fc41.ppc64le                  60/156 
  Installing       : libtasn1-4.19.0-6.fc40.ppc64le                      61/156 
  Installing       : libunistring-1.1-7.fc41.ppc64le                     62/156 
  Installing       : libidn2-2.3.7-1.fc40.ppc64le                        63/156 
  Installing       : lua-libs-5.4.6-5.fc40.ppc64le                       64/156 
  Installing       : lz4-libs-1.9.4-6.fc40.ppc64le                       65/156 
  Installing       : pcre2-10.43-2.fc41.1.ppc64le                        66/156 
  Installing       : libselinux-3.6-4.fc40.ppc64le                       67/156 
  Installing       : sed-4.9-1.fc40.ppc64le                              68/156 
  Installing       : grep-3.11-8.fc41.ppc64le                            69/156 
  Installing       : findutils-1:4.9.0-8.fc40.ppc64le                    70/156 
  Installing       : xz-1:5.4.6-3.fc41.ppc64le                           71/156 
  Installing       : libmount-2.40.1-1.fc41.ppc64le                      72/156 
  Installing       : util-linux-core-2.40.1-1.fc41.ppc64le               73/156 
  Installing       : libsemanage-3.6-3.fc40.ppc64le                      74/156 
  Installing       : shadow-utils-2:4.15.1-5.fc41.ppc64le                75/156 
  Running scriptlet: libutempter-1.2.1-13.fc40.ppc64le                   76/156 
  Installing       : libutempter-1.2.1-13.fc40.ppc64le                   76/156 
  Installing       : tar-2:1.35-3.fc40.ppc64le                           77/156 
  Installing       : zstd-1.5.6-1.fc41.ppc64le                           78/156 
  Installing       : libpsl-0.21.5-3.fc40.ppc64le                        79/156 
  Installing       : zip-3.0-40.fc40.ppc64le                             80/156 
  Installing       : cyrus-sasl-lib-2.1.28-22.fc41.ppc64le               81/156 
  Installing       : gdbm-1:1.23-6.fc40.ppc64le                          82/156 
  Installing       : libfdisk-2.40.1-1.fc41.ppc64le                      83/156 
  Installing       : add-determinism-nopython-0.2.0-9.fc41.ppc64le       84/156 
  Installing       : build-reproducibility-srpm-macros-0.2.0-9.fc41.n    85/156 
  Installing       : libxml2-2.12.7-1.fc41.ppc64le                       86/156 
  Installing       : bzip2-1.0.8-18.fc40.ppc64le                         87/156 
  Installing       : sqlite-libs-3.45.3-1.fc41.ppc64le                   88/156 
  Installing       : ed-1.20.2-1.fc41.ppc64le                            89/156 
  Installing       : patch-2.7.6-24.fc40.ppc64le                         90/156 
  Installing       : elfutils-default-yama-scope-0.191-7.fc41.noarch     91/156 
  Running scriptlet: elfutils-default-yama-scope-0.191-7.fc41.noarch     91/156 
  Installing       : cpio-2.15-1.fc40.ppc64le                            92/156 
  Installing       : diffutils-3.10-5.fc40.ppc64le                       93/156 
  Installing       : keyutils-libs-1.6.3-3.fc40.ppc64le                  94/156 
  Installing       : libbrotli-1.1.0-3.fc40.ppc64le                      95/156 
  Installing       : libffi-3.4.6-1.fc41.ppc64le                         96/156 
  Installing       : p11-kit-0.25.3-4.fc40.ppc64le                       97/156 
  Installing       : p11-kit-trust-0.25.3-4.fc40.ppc64le                 98/156 
  Running scriptlet: p11-kit-trust-0.25.3-4.fc40.ppc64le                 98/156 
  Installing       : libgomp-14.1.1-4.fc41.ppc64le                       99/156 
  Installing       : libnghttp2-1.62.0-1.fc41.ppc64le                   100/156 
  Installing       : libpkgconf-2.1.1-1.fc41.ppc64le                    101/156 
  Installing       : pkgconf-2.1.1-1.fc41.ppc64le                       102/156 
  Installing       : pkgconf-pkg-config-2.1.1-1.fc41.ppc64le            103/156 
  Installing       : librtas-2.0.6-1.fc41.ppc64le                       104/156 
  Running scriptlet: librtas-2.0.6-1.fc41.ppc64le                       104/156 
  Installing       : libtool-ltdl-2.4.7-10.fc40.ppc64le                 105/156 
  Installing       : libverto-0.3.2-8.fc40.ppc64le                      106/156 
  Installing       : xxhash-libs-0.8.2-2.fc40.ppc64le                   107/156 
  Installing       : libssh-config-0.10.6-6.fc41.noarch                 108/156 
  Installing       : kernel-srpm-macros-1.0-23.fc41.noarch              109/156 
  Installing       : gnat-srpm-macros-6-5.fc40.noarch                   110/156 
  Installing       : ghc-srpm-macros-1.9.1-1.fc41.noarch                111/156 
  Installing       : fpc-srpm-macros-1.3-12.fc40.noarch                 112/156 
  Installing       : coreutils-common-9.5-1.fc41.ppc64le                113/156 
  Installing       : openssl-libs-1:3.2.1-6.fc41.ppc64le                114/156 
  Installing       : coreutils-9.5-1.fc41.ppc64le                       115/156 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch   116/156 
  Installing       : ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch   116/156 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch   116/156 
  Installing       : krb5-libs-1.21.2-5.fc40.ppc64le                    117/156 
  Installing       : libarchive-3.7.4-1.fc41.ppc64le                    118/156 
  Installing       : libtirpc-1.3.4-1.rc3.fc41.ppc64le                  119/156 
  Installing       : authselect-libs-1.5.0-5.fc41.ppc64le               120/156 
  Installing       : gzip-1.13-1.fc40.ppc64le                           121/156 
  Installing       : cracklib-2.9.11-5.fc40.ppc64le                     122/156 
  Installing       : libpwquality-1.4.5-9.fc40.ppc64le                  123/156 
  Installing       : authselect-1.5.0-5.fc41.ppc64le                    124/156 
  Installing       : libnsl2-2.0.1-1.fc40.ppc64le                       125/156 
  Installing       : pam-1.6.1-3.fc41.ppc64le                           126/156 
  Installing       : libssh-0.10.6-6.fc41.ppc64le                       127/156 
  Installing       : libevent-2.1.12-13.fc41.ppc64le                    128/156 
  Installing       : openldap-2.6.8-1.fc41.ppc64le                      129/156 
  Installing       : libcurl-8.8.0-1.fc41.ppc64le                       130/156 
  Installing       : elfutils-libs-0.191-7.fc41.ppc64le                 131/156 
  Installing       : elfutils-debuginfod-client-0.191-7.fc41.ppc64le    132/156 
  Installing       : binutils-gold-2.42.50-11.fc41.ppc64le              133/156 
  Running scriptlet: binutils-gold-2.42.50-11.fc41.ppc64le              133/156 
  Installing       : binutils-2.42.50-11.fc41.ppc64le                   134/156 
  Running scriptlet: binutils-2.42.50-11.fc41.ppc64le                   134/156 
  Installing       : gdb-minimal-14.2-9.fc41.ppc64le                    135/156 
  Installing       : elfutils-0.191-7.fc41.ppc64le                      136/156 
  Installing       : debugedit-5.0-16.fc41.ppc64le                      137/156 
  Installing       : curl-8.8.0-1.fc41.ppc64le                          138/156 
  Installing       : rpm-sequoia-1.6.0-3.fc41.ppc64le                   139/156 
  Installing       : rpm-libs-4.19.91-4.fc41.ppc64le                    140/156 
  Running scriptlet: rpm-4.19.91-4.fc41.ppc64le                         141/156 
  Installing       : rpm-4.19.91-4.fc41.ppc64le                         141/156 
  Installing       : efi-srpm-macros-5-11.fc40.noarch                   142/156 
  Installing       : lua-srpm-macros-1-13.fc40.noarch                   143/156 
  Installing       : zig-srpm-macros-1-2.fc40.noarch                    144/156 
  Installing       : rpm-build-libs-4.19.91-4.fc41.ppc64le              145/156 
  Installing       : ansible-srpm-macros-1-15.fc41.noarch               146/156 
  Installing       : fonts-srpm-macros-1:2.0.5-14.fc40.noarch           147/156 
  Installing       : forge-srpm-macros-0.3.1-1.fc41.noarch              148/156 
  Installing       : go-srpm-macros-3.6.0-1.fc41.noarch                 149/156 
  Installing       : python-srpm-macros-3.12-9.fc41.noarch              150/156 
  Installing       : redhat-rpm-config-291-1.fc41.noarch                151/156 
  Installing       : rpm-build-4.19.91-4.fc41.ppc64le                   152/156 
  Installing       : pyproject-srpm-macros-1.12.0-1.fc40.noarch         153/156 
  Installing       : util-linux-2.40.1-1.fc41.ppc64le                   154/156 
  Running scriptlet: util-linux-2.40.1-1.fc41.ppc64le                   154/156 
  Installing       : which-2.21-41.fc40.ppc64le                         155/156 
  Installing       : info-7.1-2.fc40.ppc64le                            156/156 
  Running scriptlet: filesystem-3.18-9.fc41.ppc64le                     156/156 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch   156/156 
  Running scriptlet: authselect-libs-1.5.0-5.fc41.ppc64le               156/156 
  Running scriptlet: rpm-4.19.91-4.fc41.ppc64le                         156/156 
  Running scriptlet: info-7.1-2.fc40.ppc64le                            156/156 

Installed:
  add-determinism-nopython-0.2.0-9.fc41.ppc64le                                 
  alternatives-1.27-1.fc41.ppc64le                                              
  ansible-srpm-macros-1-15.fc41.noarch                                          
  audit-libs-4.0.1-2.fc41.ppc64le                                               
  authselect-1.5.0-5.fc41.ppc64le                                               
  authselect-libs-1.5.0-5.fc41.ppc64le                                          
  basesystem-11-20.fc40.noarch                                                  
  bash-5.2.26-3.fc40.ppc64le                                                    
  binutils-2.42.50-11.fc41.ppc64le                                              
  binutils-gold-2.42.50-11.fc41.ppc64le                                         
  build-reproducibility-srpm-macros-0.2.0-9.fc41.noarch                         
  bzip2-1.0.8-18.fc40.ppc64le                                                   
  bzip2-libs-1.0.8-18.fc40.ppc64le                                              
  ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch                              
  coreutils-9.5-1.fc41.ppc64le                                                  
  coreutils-common-9.5-1.fc41.ppc64le                                           
  cpio-2.15-1.fc40.ppc64le                                                      
  cracklib-2.9.11-5.fc40.ppc64le                                                
  crypto-policies-20240521-1.gitf71d135.fc41.noarch                             
  curl-8.8.0-1.fc41.ppc64le                                                     
  cyrus-sasl-lib-2.1.28-22.fc41.ppc64le                                         
  debugedit-5.0-16.fc41.ppc64le                                                 
  diffutils-3.10-5.fc40.ppc64le                                                 
  dwz-0.15-6.fc40.ppc64le                                                       
  ed-1.20.2-1.fc41.ppc64le                                                      
  efi-srpm-macros-5-11.fc40.noarch                                              
  elfutils-0.191-7.fc41.ppc64le                                                 
  elfutils-debuginfod-client-0.191-7.fc41.ppc64le                               
  elfutils-default-yama-scope-0.191-7.fc41.noarch                               
  elfutils-libelf-0.191-7.fc41.ppc64le                                          
  elfutils-libs-0.191-7.fc41.ppc64le                                            
  fedora-gpg-keys-41-0.2.noarch                                                 
  fedora-release-41-0.13.noarch                                                 
  fedora-release-common-41-0.13.noarch                                          
  fedora-release-identity-basic-41-0.13.noarch                                  
  fedora-repos-41-0.2.noarch                                                    
  fedora-repos-rawhide-41-0.2.noarch                                            
  file-5.45-5.fc41.ppc64le                                                      
  file-libs-5.45-5.fc41.ppc64le                                                 
  filesystem-3.18-9.fc41.ppc64le                                                
  findutils-1:4.9.0-8.fc40.ppc64le                                              
  fonts-srpm-macros-1:2.0.5-14.fc40.noarch                                      
  forge-srpm-macros-0.3.1-1.fc41.noarch                                         
  fpc-srpm-macros-1.3-12.fc40.noarch                                            
  gawk-5.3.0-3.fc40.ppc64le                                                     
  gdb-minimal-14.2-9.fc41.ppc64le                                               
  gdbm-1:1.23-6.fc40.ppc64le                                                    
  gdbm-libs-1:1.23-6.fc40.ppc64le                                               
  ghc-srpm-macros-1.9.1-1.fc41.noarch                                           
  glibc-2.39.9000-18.fc41.ppc64le                                               
  glibc-common-2.39.9000-18.fc41.ppc64le                                        
  glibc-gconv-extra-2.39.9000-18.fc41.ppc64le                                   
  glibc-minimal-langpack-2.39.9000-18.fc41.ppc64le                              
  gmp-1:6.3.0-1.fc41.ppc64le                                                    
  gnat-srpm-macros-6-5.fc40.noarch                                              
  go-srpm-macros-3.6.0-1.fc41.noarch                                            
  grep-3.11-8.fc41.ppc64le                                                      
  gzip-1.13-1.fc40.ppc64le                                                      
  info-7.1-2.fc40.ppc64le                                                       
  jansson-2.13.1-9.fc40.ppc64le                                                 
  kernel-srpm-macros-1.0-23.fc41.noarch                                         
  keyutils-libs-1.6.3-3.fc40.ppc64le                                            
  krb5-libs-1.21.2-5.fc40.ppc64le                                               
  libacl-2.3.2-1.fc40.ppc64le                                                   
  libarchive-3.7.4-1.fc41.ppc64le                                               
  libattr-2.5.2-3.fc40.ppc64le                                                  
  libblkid-2.40.1-1.fc41.ppc64le                                                
  libbrotli-1.1.0-3.fc40.ppc64le                                                
  libcap-2.70-1.fc41.ppc64le                                                    
  libcap-ng-0.8.5-1.fc41.ppc64le                                                
  libcom_err-1.47.0-5.fc40.ppc64le                                              
  libcurl-8.8.0-1.fc41.ppc64le                                                  
  libeconf-0.6.2-2.fc41.ppc64le                                                 
  libevent-2.1.12-13.fc41.ppc64le                                               
  libfdisk-2.40.1-1.fc41.ppc64le                                                
  libffi-3.4.6-1.fc41.ppc64le                                                   
  libgcc-14.1.1-4.fc41.ppc64le                                                  
  libgomp-14.1.1-4.fc41.ppc64le                                                 
  libidn2-2.3.7-1.fc40.ppc64le                                                  
  libmount-2.40.1-1.fc41.ppc64le                                                
  libnghttp2-1.62.0-1.fc41.ppc64le                                              
  libnsl2-2.0.1-1.fc40.ppc64le                                                  
  libpkgconf-2.1.1-1.fc41.ppc64le                                               
  libpsl-0.21.5-3.fc40.ppc64le                                                  
  libpwquality-1.4.5-9.fc40.ppc64le                                             
  librtas-2.0.6-1.fc41.ppc64le                                                  
  libselinux-3.6-4.fc40.ppc64le                                                 
  libsemanage-3.6-3.fc40.ppc64le                                                
  libsepol-3.6-3.fc40.ppc64le                                                   
  libsmartcols-2.40.1-1.fc41.ppc64le                                            
  libssh-0.10.6-6.fc41.ppc64le                                                  
  libssh-config-0.10.6-6.fc41.noarch                                            
  libstdc++-14.1.1-4.fc41.ppc64le                                               
  libtasn1-4.19.0-6.fc40.ppc64le                                                
  libtirpc-1.3.4-1.rc3.fc41.ppc64le                                             
  libtool-ltdl-2.4.7-10.fc40.ppc64le                                            
  libunistring-1.1-7.fc41.ppc64le                                               
  libutempter-1.2.1-13.fc40.ppc64le                                             
  libuuid-2.40.1-1.fc41.ppc64le                                                 
  libverto-0.3.2-8.fc40.ppc64le                                                 
  libxcrypt-4.4.36-5.fc40.ppc64le                                               
  libxml2-2.12.7-1.fc41.ppc64le                                                 
  libzstd-1.5.6-1.fc41.ppc64le                                                  
  lua-libs-5.4.6-5.fc40.ppc64le                                                 
  lua-srpm-macros-1-13.fc40.noarch                                              
  lz4-libs-1.9.4-6.fc40.ppc64le                                                 
  mpfr-4.2.1-4.fc41.ppc64le                                                     
  ncurses-base-6.4-12.20240127.fc40.noarch                                      
  ncurses-libs-6.4-12.20240127.fc40.ppc64le                                     
  ocaml-srpm-macros-10-1.fc41.noarch                                            
  openblas-srpm-macros-2-17.fc41.noarch                                         
  openldap-2.6.8-1.fc41.ppc64le                                                 
  openssl-libs-1:3.2.1-6.fc41.ppc64le                                           
  p11-kit-0.25.3-4.fc40.ppc64le                                                 
  p11-kit-trust-0.25.3-4.fc40.ppc64le                                           
  package-notes-srpm-macros-0.5-11.fc40.noarch                                  
  pam-1.6.1-3.fc41.ppc64le                                                      
  pam-libs-1.6.1-3.fc41.ppc64le                                                 
  patch-2.7.6-24.fc40.ppc64le                                                   
  pcre2-10.43-2.fc41.1.ppc64le                                                  
  pcre2-syntax-10.43-2.fc41.1.noarch                                            
  perl-srpm-macros-1-53.fc40.noarch                                             
  pkgconf-2.1.1-1.fc41.ppc64le                                                  
  pkgconf-m4-2.1.1-1.fc41.noarch                                                
  pkgconf-pkg-config-2.1.1-1.fc41.ppc64le                                       
  popt-1.19-6.fc40.ppc64le                                                      
  publicsuffix-list-dafsa-20240107-3.fc40.noarch                                
  pyproject-srpm-macros-1.12.0-1.fc40.noarch                                    
  python-srpm-macros-3.12-9.fc41.noarch                                         
  qt5-srpm-macros-5.15.13-1.fc41.noarch                                         
  qt6-srpm-macros-6.7.1-1.fc41.noarch                                           
  readline-8.2-8.fc40.ppc64le                                                   
  redhat-rpm-config-291-1.fc41.noarch                                           
  rpm-4.19.91-4.fc41.ppc64le                                                    
  rpm-build-4.19.91-4.fc41.ppc64le                                              
  rpm-build-libs-4.19.91-4.fc41.ppc64le                                         
  rpm-libs-4.19.91-4.fc41.ppc64le                                               
  rpm-sequoia-1.6.0-3.fc41.ppc64le                                              
  rust-srpm-macros-26.3-1.fc41.noarch                                           
  sed-4.9-1.fc40.ppc64le                                                        
  setup-2.15.0-3.fc41.noarch                                                    
  shadow-utils-2:4.15.1-5.fc41.ppc64le                                          
  sqlite-libs-3.45.3-1.fc41.ppc64le                                             
  systemd-libs-256~rc3-3.fc41.ppc64le                                           
  tar-2:1.35-3.fc40.ppc64le                                                     
  unzip-6.0-63.fc40.ppc64le                                                     
  util-linux-2.40.1-1.fc41.ppc64le                                              
  util-linux-core-2.40.1-1.fc41.ppc64le                                         
  which-2.21-41.fc40.ppc64le                                                    
  xxhash-libs-0.8.2-2.fc40.ppc64le                                              
  xz-1:5.4.6-3.fc41.ppc64le                                                     
  xz-libs-1:5.4.6-3.fc41.ppc64le                                                
  zig-srpm-macros-1-2.fc40.noarch                                               
  zip-3.0-40.fc40.ppc64le                                                       
  zlib-ng-compat-2.1.6-4.fc41.ppc64le                                           
  zstd-1.5.6-1.fc41.ppc64le                                                     

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-nopython-0.2.0-9.fc41.ppc64le
alternatives-1.27-1.fc41.ppc64le
ansible-srpm-macros-1-15.fc41.noarch
audit-libs-4.0.1-2.fc41.ppc64le
authselect-1.5.0-5.fc41.ppc64le
authselect-libs-1.5.0-5.fc41.ppc64le
basesystem-11-20.fc40.noarch
bash-5.2.26-3.fc40.ppc64le
binutils-2.42.50-11.fc41.ppc64le
binutils-gold-2.42.50-11.fc41.ppc64le
build-reproducibility-srpm-macros-0.2.0-9.fc41.noarch
bzip2-1.0.8-18.fc40.ppc64le
bzip2-libs-1.0.8-18.fc40.ppc64le
ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch
coreutils-9.5-1.fc41.ppc64le
coreutils-common-9.5-1.fc41.ppc64le
cpio-2.15-1.fc40.ppc64le
cracklib-2.9.11-5.fc40.ppc64le
crypto-policies-20240521-1.gitf71d135.fc41.noarch
curl-8.8.0-1.fc41.ppc64le
cyrus-sasl-lib-2.1.28-22.fc41.ppc64le
debugedit-5.0-16.fc41.ppc64le
diffutils-3.10-5.fc40.ppc64le
dwz-0.15-6.fc40.ppc64le
ed-1.20.2-1.fc41.ppc64le
efi-srpm-macros-5-11.fc40.noarch
elfutils-0.191-7.fc41.ppc64le
elfutils-debuginfod-client-0.191-7.fc41.ppc64le
elfutils-default-yama-scope-0.191-7.fc41.noarch
elfutils-libelf-0.191-7.fc41.ppc64le
elfutils-libs-0.191-7.fc41.ppc64le
fedora-gpg-keys-41-0.2.noarch
fedora-release-41-0.13.noarch
fedora-release-common-41-0.13.noarch
fedora-release-identity-basic-41-0.13.noarch
fedora-repos-41-0.2.noarch
fedora-repos-rawhide-41-0.2.noarch
file-5.45-5.fc41.ppc64le
file-libs-5.45-5.fc41.ppc64le
filesystem-3.18-9.fc41.ppc64le
findutils-4.9.0-8.fc40.ppc64le
fonts-srpm-macros-2.0.5-14.fc40.noarch
forge-srpm-macros-0.3.1-1.fc41.noarch
fpc-srpm-macros-1.3-12.fc40.noarch
gawk-5.3.0-3.fc40.ppc64le
gdb-minimal-14.2-9.fc41.ppc64le
gdbm-1.23-6.fc40.ppc64le
gdbm-libs-1.23-6.fc40.ppc64le
ghc-srpm-macros-1.9.1-1.fc41.noarch
glibc-2.39.9000-18.fc41.ppc64le
glibc-common-2.39.9000-18.fc41.ppc64le
glibc-gconv-extra-2.39.9000-18.fc41.ppc64le
glibc-minimal-langpack-2.39.9000-18.fc41.ppc64le
gmp-6.3.0-1.fc41.ppc64le
gnat-srpm-macros-6-5.fc40.noarch
go-srpm-macros-3.6.0-1.fc41.noarch
grep-3.11-8.fc41.ppc64le
gzip-1.13-1.fc40.ppc64le
info-7.1-2.fc40.ppc64le
jansson-2.13.1-9.fc40.ppc64le
kernel-srpm-macros-1.0-23.fc41.noarch
keyutils-libs-1.6.3-3.fc40.ppc64le
krb5-libs-1.21.2-5.fc40.ppc64le
libacl-2.3.2-1.fc40.ppc64le
libarchive-3.7.4-1.fc41.ppc64le
libattr-2.5.2-3.fc40.ppc64le
libblkid-2.40.1-1.fc41.ppc64le
libbrotli-1.1.0-3.fc40.ppc64le
libcap-2.70-1.fc41.ppc64le
libcap-ng-0.8.5-1.fc41.ppc64le
libcom_err-1.47.0-5.fc40.ppc64le
libcurl-8.8.0-1.fc41.ppc64le
libeconf-0.6.2-2.fc41.ppc64le
libevent-2.1.12-13.fc41.ppc64le
libfdisk-2.40.1-1.fc41.ppc64le
libffi-3.4.6-1.fc41.ppc64le
libgcc-14.1.1-4.fc41.ppc64le
libgomp-14.1.1-4.fc41.ppc64le
libidn2-2.3.7-1.fc40.ppc64le
libmount-2.40.1-1.fc41.ppc64le
libnghttp2-1.62.0-1.fc41.ppc64le
libnsl2-2.0.1-1.fc40.ppc64le
libpkgconf-2.1.1-1.fc41.ppc64le
libpsl-0.21.5-3.fc40.ppc64le
libpwquality-1.4.5-9.fc40.ppc64le
librtas-2.0.6-1.fc41.ppc64le
libselinux-3.6-4.fc40.ppc64le
libsemanage-3.6-3.fc40.ppc64le
libsepol-3.6-3.fc40.ppc64le
libsmartcols-2.40.1-1.fc41.ppc64le
libssh-0.10.6-6.fc41.ppc64le
libssh-config-0.10.6-6.fc41.noarch
libstdc++-14.1.1-4.fc41.ppc64le
libtasn1-4.19.0-6.fc40.ppc64le
libtirpc-1.3.4-1.rc3.fc41.ppc64le
libtool-ltdl-2.4.7-10.fc40.ppc64le
libunistring-1.1-7.fc41.ppc64le
libutempter-1.2.1-13.fc40.ppc64le
libuuid-2.40.1-1.fc41.ppc64le
libverto-0.3.2-8.fc40.ppc64le
libxcrypt-4.4.36-5.fc40.ppc64le
libxml2-2.12.7-1.fc41.ppc64le
libzstd-1.5.6-1.fc41.ppc64le
lua-libs-5.4.6-5.fc40.ppc64le
lua-srpm-macros-1-13.fc40.noarch
lz4-libs-1.9.4-6.fc40.ppc64le
mpfr-4.2.1-4.fc41.ppc64le
ncurses-base-6.4-12.20240127.fc40.noarch
ncurses-libs-6.4-12.20240127.fc40.ppc64le
ocaml-srpm-macros-10-1.fc41.noarch
openblas-srpm-macros-2-17.fc41.noarch
openldap-2.6.8-1.fc41.ppc64le
openssl-libs-3.2.1-6.fc41.ppc64le
p11-kit-0.25.3-4.fc40.ppc64le
p11-kit-trust-0.25.3-4.fc40.ppc64le
package-notes-srpm-macros-0.5-11.fc40.noarch
pam-1.6.1-3.fc41.ppc64le
pam-libs-1.6.1-3.fc41.ppc64le
patch-2.7.6-24.fc40.ppc64le
pcre2-10.43-2.fc41.1.ppc64le
pcre2-syntax-10.43-2.fc41.1.noarch
perl-srpm-macros-1-53.fc40.noarch
pkgconf-2.1.1-1.fc41.ppc64le
pkgconf-m4-2.1.1-1.fc41.noarch
pkgconf-pkg-config-2.1.1-1.fc41.ppc64le
popt-1.19-6.fc40.ppc64le
publicsuffix-list-dafsa-20240107-3.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-9.fc41.noarch
qt5-srpm-macros-5.15.13-1.fc41.noarch
qt6-srpm-macros-6.7.1-1.fc41.noarch
readline-8.2-8.fc40.ppc64le
redhat-rpm-config-291-1.fc41.noarch
rpm-4.19.91-4.fc41.ppc64le
rpm-build-4.19.91-4.fc41.ppc64le
rpm-build-libs-4.19.91-4.fc41.ppc64le
rpm-libs-4.19.91-4.fc41.ppc64le
rpm-sequoia-1.6.0-3.fc41.ppc64le
rust-srpm-macros-26.3-1.fc41.noarch
sed-4.9-1.fc40.ppc64le
setup-2.15.0-3.fc41.noarch
shadow-utils-4.15.1-5.fc41.ppc64le
sqlite-libs-3.45.3-1.fc41.ppc64le
systemd-libs-256~rc3-3.fc41.ppc64le
tar-1.35-3.fc40.ppc64le
unzip-6.0-63.fc40.ppc64le
util-linux-2.40.1-1.fc41.ppc64le
util-linux-core-2.40.1-1.fc41.ppc64le
which-2.21-41.fc40.ppc64le
xxhash-libs-0.8.2-2.fc40.ppc64le
xz-5.4.6-3.fc41.ppc64le
xz-libs-5.4.6-3.fc41.ppc64le
zig-srpm-macros-1-2.fc40.noarch
zip-3.0-40.fc40.ppc64le
zlib-ng-compat-2.1.6-4.fc41.ppc64le
zstd-1.5.6-1.fc41.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-19.fc41.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-ppc64le-1717077957.465238/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-39-ppc64le-1717077957.465238/root/var/log/dnf.log
/var/lib/mock/fedora-39-ppc64le-1717077957.465238/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-39-ppc64le-1717077957.465238/root/var/log/dnf.rpm.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-plztv5a2/mmseq/mmseq.spec) Config(child) 5 minutes 37 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-19.fc41.src.rpm)  Config(fedora-39-ppc64le)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-39-ppc64le-bootstrap-1717077957.465238/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-39-ppc64le-bootstrap-1717077957.465238/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-39-ppc64le-1717077957.465238/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc39.ppc64le
  rpm-sequoia-1.6.0-1.fc39.ppc64le
  python3-dnf-4.20.0-1.fc41.noarch
  python3-dnf-plugins-core-4.7.0-1.fc41.noarch
  dnf5-5.2.2.0-1.fc41.ppc64le
Finish: chroot init
Start: build phase for mmseq-1.0.11-19.fc41.src.rpm
Start: build setup for mmseq-1.0.11-19.fc41.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-19.fc41.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  15 kB/s | 1.5 kB     00:00    
Copr repository                                  34 MB/s |  16 MB     00:00    
Additional repo http_kojipkgs_fedoraproject_org  49 kB/s | 3.8 kB     00:00    
fedora                                           87 kB/s | 3.8 kB     00:00    
updates                                         118 kB/s | 4.9 kB     00:00    
Dependencies resolved.
=================================================================================================================================
 Package                       Arch     Version              Repository                                                      Size
=================================================================================================================================
Installing:
 armadillo-devel               ppc64le  12.8.1-1.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.0 M
 boost-devel                   ppc64le  1.83.0-5.fc41        copr_base                                                       12 M
 flexiblas-devel               ppc64le  3.4.4-1.fc41         copr_base                                                      113 k
 gcc-c++                       ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 M
 gsl-devel                     ppc64le  2.7.1-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  609 k
 htslib-devel                  ppc64le  1.15.1-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   99 k
 make                          ppc64le  1:4.4.1-6.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  596 k
 perl-generators               noarch   1.16-5.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 zlib-ng-compat-devel          ppc64le  2.1.6-4.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   36 k
Installing dependencies:
 SuperLU                       ppc64le  6.0.1-5.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  206 k
 SuperLU-devel                 ppc64le  6.0.1-5.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   27 k
 add-determinism               ppc64le  0.2.0-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  912 k
 annobin-docs                  noarch   12.54-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   90 k
 annobin-plugin-gcc            ppc64le  12.54-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  966 k
 armadillo                     ppc64le  12.8.1-1.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   36 k
 arpack                        ppc64le  3.9.1-3.fc40         copr_base                                                      187 k
 arpack-devel                  ppc64le  3.9.1-3.fc40         copr_base                                                       22 k
 autoconf                      noarch   2.72-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  817 k
 automake                      noarch   1.16.5-16.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  676 k
 boost                         ppc64le  1.83.0-5.fc41        copr_base                                                       14 k
 boost-atomic                  ppc64le  1.83.0-5.fc41        copr_base                                                       19 k
 boost-chrono                  ppc64le  1.83.0-5.fc41        copr_base                                                       26 k
 boost-container               ppc64le  1.83.0-5.fc41        copr_base                                                       41 k
 boost-context                 ppc64le  1.83.0-5.fc41        copr_base                                                       17 k
 boost-contract                ppc64le  1.83.0-5.fc41        copr_base                                                       45 k
 boost-coroutine               ppc64le  1.83.0-5.fc41        copr_base                                                       20 k
 boost-date-time               ppc64le  1.83.0-5.fc41        copr_base                                                       15 k
 boost-fiber                   ppc64le  1.83.0-5.fc41        copr_base                                                       44 k
 boost-filesystem              ppc64le  1.83.0-5.fc41        copr_base                                                       69 k
 boost-graph                   ppc64le  1.83.0-5.fc41        copr_base                                                      155 k
 boost-iostreams               ppc64le  1.83.0-5.fc41        copr_base                                                       40 k
 boost-json                    ppc64le  1.83.0-5.fc41        copr_base                                                      152 k
 boost-locale                  ppc64le  1.83.0-5.fc41        copr_base                                                      233 k
 boost-log                     ppc64le  1.83.0-5.fc41        copr_base                                                      513 k
 boost-math                    ppc64le  1.83.0-5.fc41        copr_base                                                      315 k
 boost-nowide                  ppc64le  1.83.0-5.fc41        copr_base                                                       21 k
 boost-numpy3                  ppc64le  1.83.0-5.fc41        copr_base                                                       29 k
 boost-program-options         ppc64le  1.83.0-5.fc41        copr_base                                                      112 k
 boost-python3                 ppc64le  1.83.0-5.fc41        copr_base                                                      117 k
 boost-random                  ppc64le  1.83.0-5.fc41        copr_base                                                       24 k
 boost-regex                   ppc64le  1.83.0-5.fc41        copr_base                                                      120 k
 boost-serialization           ppc64le  1.83.0-5.fc41        copr_base                                                      137 k
 boost-stacktrace              ppc64le  1.83.0-5.fc41        copr_base                                                       30 k
 boost-system                  ppc64le  1.83.0-5.fc41        copr_base                                                       15 k
 boost-test                    ppc64le  1.83.0-5.fc41        copr_base                                                      246 k
 boost-thread                  ppc64le  1.83.0-5.fc41        copr_base                                                       63 k
 boost-timer                   ppc64le  1.83.0-5.fc41        copr_base                                                       41 k
 boost-type_erasure            ppc64le  1.83.0-5.fc41        copr_base                                                       33 k
 boost-wave                    ppc64le  1.83.0-5.fc41        copr_base                                                      216 k
 cmake-filesystem              ppc64le  3.28.3-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   18 k
 cpp                           ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   10 M
 emacs-filesystem              noarch   1:30.0-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  7.1 k
 expat                         ppc64le  2.6.2-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  119 k
 flexiblas                     ppc64le  3.4.4-1.fc41         copr_base                                                       26 k
 flexiblas-netlib              ppc64le  3.4.4-1.fc41         copr_base                                                      2.9 M
 flexiblas-netlib64            ppc64le  3.4.4-1.fc41         copr_base                                                      2.9 M
 flexiblas-openblas-openmp     ppc64le  3.4.4-1.fc41         copr_base                                                       17 k
 flexiblas-openblas-openmp64   ppc64le  3.4.4-1.fc41         copr_base                                                       17 k
 gc                            ppc64le  8.2.2-6.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  122 k
 gcc                           ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   32 M
 gcc-gfortran                  ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 M
 gcc-plugin-annobin            ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   53 k
 glibc-devel                   ppc64le  2.39.9000-18.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  562 k
 groff-base                    ppc64le  1.23.0-6.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.1 M
 gsl                           ppc64le  2.7.1-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.2 M
 guile30                       ppc64le  3.0.9-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.2 M
 hdf5                          ppc64le  1.12.1-15.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.3 M
 hdf5-devel                    ppc64le  1.12.1-15.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.3 M
 htslib                        ppc64le  1.15.1-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  560 k
 kernel-headers                ppc64le  6.10.0-0.rc1.17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.4 M
 libaec                        ppc64le  1.1.2-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   40 k
 libaec-devel                  ppc64le  1.1.2-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 k
 libasan                       ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  514 k
 libatomic                     ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   39 k
 libb2                         ppc64le  0.98.1-11.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   25 k
 libgfortran                   ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  629 k
 libicu                        ppc64le  74.2-1.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   11 M
 libicu-devel                  ppc64le  74.2-1.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  856 k
 libmpc                        ppc64le  1.3.1-5.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   96 k
 libquadmath                   ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  216 k
 libquadmath-devel             ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   40 k
 libstdc++-devel               ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.6 M
 libubsan                      ppc64le  14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  260 k
 libxcrypt-devel               ppc64le  4.4.36-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   29 k
 m4                            ppc64le  1.4.19-9.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  315 k
 metis                         ppc64le  5.1.0.3-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  598 k
 mpdecimal                     ppc64le  2.5.1-9.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  103 k
 ncurses                       ppc64le  6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  424 k
 openblas                      ppc64le  0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   39 k
 openblas-openmp               ppc64le  0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  4.8 M
 openblas-openmp64             ppc64le  0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  4.7 M
 perl-AutoLoader               noarch   5.74-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   21 k
 perl-B                        ppc64le  1.88-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  179 k
 perl-Carp                     noarch   1.54-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   29 k
 perl-Class-Struct             noarch   0.68-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 perl-Data-Dumper              ppc64le  2.188-503.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   58 k
 perl-Digest                   noarch   1.20-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   25 k
 perl-Digest-MD5               ppc64le  2.59-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   36 k
 perl-DynaLoader               ppc64le  1.54-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   26 k
 perl-Encode                   ppc64le  4:3.21-505.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.0 M
 perl-Errno                    ppc64le  1.37-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   15 k
 perl-Exporter                 noarch   5.78-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   31 k
 perl-Fcntl                    ppc64le  1.15-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   21 k
 perl-Fedora-VSP               noarch   0.001-34.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   23 k
 perl-File-Basename            noarch   2.86-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   17 k
 perl-File-Compare             noarch   1.100.700-507.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 perl-File-Copy                noarch   2.41-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   20 k
 perl-File-Find                noarch   1.43-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   25 k
 perl-File-Path                noarch   2.18-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   35 k
 perl-File-Temp                noarch   1:0.231.100-503.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   59 k
 perl-File-stat                noarch   1.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   17 k
 perl-FileHandle               noarch   2.05-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 perl-Getopt-Long              noarch   1:2.57-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   63 k
 perl-Getopt-Std               noarch   1.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 perl-HTTP-Tiny                noarch   0.088-5.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   56 k
 perl-IO                       ppc64le  1.52-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   78 k
 perl-IO-Socket-IP             noarch   0.42-2.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   42 k
 perl-IO-Socket-SSL            noarch   2.085-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  225 k
 perl-IPC-Open3                noarch   1.22-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 perl-MIME-Base64              ppc64le  3.16-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   31 k
 perl-Mozilla-CA               noarch   20240313-1.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 perl-Net-SSLeay               ppc64le  1.94-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  370 k
 perl-POSIX                    ppc64le  2.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  117 k
 perl-PathTools                ppc64le  3.89-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   83 k
 perl-Pod-Escapes              noarch   1:1.07-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   20 k
 perl-Pod-Perldoc              noarch   3.28.01-503.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   79 k
 perl-Pod-Simple               noarch   1:3.45-6.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  209 k
 perl-Pod-Usage                noarch   4:2.03-504.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   40 k
 perl-Scalar-List-Utils        ppc64le  5:1.63-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   76 k
 perl-SelectSaver              noarch   1.02-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 k
 perl-Socket                   ppc64le  4:2.038-1.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   56 k
 perl-Storable                 ppc64le  1:3.32-502.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  102 k
 perl-Symbol                   noarch   1.09-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 perl-Term-ANSIColor           noarch   5.01-504.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   48 k
 perl-Term-Cap                 noarch   1.18-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 perl-Text-ParseWords          noarch   3.31-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 perl-Text-Tabs+Wrap           noarch   2024.001-1.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 perl-Thread-Queue             noarch   3.14-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   21 k
 perl-Time-Local               noarch   2:1.350-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   34 k
 perl-URI                      noarch   5.28-1.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  120 k
 perl-base                     noarch   2.27-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 perl-constant                 noarch   1.33-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   23 k
 perl-if                       noarch   0.61.000-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 perl-interpreter              ppc64le  4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   72 k
 perl-libnet                   noarch   3.15-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  122 k
 perl-libs                     ppc64le  4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.3 M
 perl-locale                   noarch   1.10-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 perl-macros                   noarch   4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 k
 perl-mro                      ppc64le  1.28-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   29 k
 perl-overload                 noarch   1.37-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   46 k
 perl-overloading              noarch   0.02-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 perl-parent                   noarch   1:0.241-502.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   15 k
 perl-podlators                noarch   1:5.01-502.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  121 k
 perl-threads                  ppc64le  1:2.36-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   58 k
 perl-threads-shared           ppc64le  1.68-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   46 k
 perl-vars                     noarch   1.05-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 python-pip-wheel              noarch   24.0-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.5 M
 python3                       ppc64le  3.12.3-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   27 k
 python3-libs                  ppc64le  3.12.3-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.9 M
 python3-numpy                 ppc64le  1:1.26.4-4.fc41      copr_base                                                      6.8 M
 tzdata                        noarch   2024a-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  431 k

Transaction Summary
=================================================================================================================================
Install  161 Packages

Total download size: 163 M
Installed size: 741 M
Downloading Packages:
(1/161): boost-1.83.0-5.fc41.ppc64le.rpm        200 kB/s |  14 kB     00:00    
(2/161): arpack-devel-3.9.1-3.fc40.ppc64le.rpm  283 kB/s |  22 kB     00:00    
(3/161): arpack-3.9.1-3.fc40.ppc64le.rpm        2.0 MB/s | 187 kB     00:00    
(4/161): boost-atomic-1.83.0-5.fc41.ppc64le.rpm 761 kB/s |  19 kB     00:00    
(5/161): boost-chrono-1.83.0-5.fc41.ppc64le.rpm 1.6 MB/s |  26 kB     00:00    
(6/161): boost-container-1.83.0-5.fc41.ppc64le. 3.6 MB/s |  41 kB     00:00    
(7/161): boost-context-1.83.0-5.fc41.ppc64le.rp 1.4 MB/s |  17 kB     00:00    
(8/161): boost-contract-1.83.0-5.fc41.ppc64le.r 3.8 MB/s |  45 kB     00:00    
(9/161): boost-coroutine-1.83.0-5.fc41.ppc64le. 1.2 MB/s |  20 kB     00:00    
(10/161): boost-date-time-1.83.0-5.fc41.ppc64le 956 kB/s |  15 kB     00:00    
(11/161): boost-fiber-1.83.0-5.fc41.ppc64le.rpm 1.3 MB/s |  44 kB     00:00    
(12/161): boost-filesystem-1.83.0-5.fc41.ppc64l 1.7 MB/s |  69 kB     00:00    
(13/161): boost-graph-1.83.0-5.fc41.ppc64le.rpm 3.5 MB/s | 155 kB     00:00    
(14/161): boost-iostreams-1.83.0-5.fc41.ppc64le 1.0 MB/s |  40 kB     00:00    
(15/161): boost-json-1.83.0-5.fc41.ppc64le.rpm  5.9 MB/s | 152 kB     00:00    
(16/161): boost-locale-1.83.0-5.fc41.ppc64le.rp 9.6 MB/s | 233 kB     00:00    
(17/161): boost-math-1.83.0-5.fc41.ppc64le.rpm   16 MB/s | 315 kB     00:00    
(18/161): boost-log-1.83.0-5.fc41.ppc64le.rpm    16 MB/s | 513 kB     00:00    
(19/161): boost-nowide-1.83.0-5.fc41.ppc64le.rp 1.3 MB/s |  21 kB     00:00    
(20/161): boost-numpy3-1.83.0-5.fc41.ppc64le.rp 2.4 MB/s |  29 kB     00:00    
(21/161): boost-python3-1.83.0-5.fc41.ppc64le.r 7.9 MB/s | 117 kB     00:00    
(22/161): boost-program-options-1.83.0-5.fc41.p 4.3 MB/s | 112 kB     00:00    
(23/161): boost-random-1.83.0-5.fc41.ppc64le.rp 2.0 MB/s |  24 kB     00:00    
(24/161): boost-regex-1.83.0-5.fc41.ppc64le.rpm 9.1 MB/s | 120 kB     00:00    
(25/161): boost-serialization-1.83.0-5.fc41.ppc 8.7 MB/s | 137 kB     00:00    
(26/161): boost-stacktrace-1.83.0-5.fc41.ppc64l 2.9 MB/s |  30 kB     00:00    
(27/161): boost-devel-1.83.0-5.fc41.ppc64le.rpm  38 MB/s |  12 MB     00:00    
(28/161): boost-system-1.83.0-5.fc41.ppc64le.rp 157 kB/s |  15 kB     00:00    
(29/161): boost-test-1.83.0-5.fc41.ppc64le.rpm  2.4 MB/s | 246 kB     00:00    
(30/161): boost-thread-1.83.0-5.fc41.ppc64le.rp 5.3 MB/s |  63 kB     00:00    
(31/161): boost-timer-1.83.0-5.fc41.ppc64le.rpm 3.1 MB/s |  41 kB     00:00    
(32/161): boost-type_erasure-1.83.0-5.fc41.ppc6 2.8 MB/s |  33 kB     00:00    
(33/161): flexiblas-devel-3.4.4-1.fc41.ppc64le. 8.9 MB/s | 113 kB     00:00    
(34/161): boost-wave-1.83.0-5.fc41.ppc64le.rpm   12 MB/s | 216 kB     00:00    
(35/161): flexiblas-3.4.4-1.fc41.ppc64le.rpm    1.5 MB/s |  26 kB     00:00    
(36/161): flexiblas-openblas-openmp-3.4.4-1.fc4 938 kB/s |  17 kB     00:00    
(37/161): flexiblas-netlib-3.4.4-1.fc41.ppc64le  32 MB/s | 2.9 MB     00:00    
(38/161): flexiblas-openblas-openmp64-3.4.4-1.f 257 kB/s |  17 kB     00:00    
(39/161): flexiblas-netlib64-3.4.4-1.fc41.ppc64  27 MB/s | 2.9 MB     00:00    
(40/161): python3-numpy-1.26.4-4.fc41.ppc64le.r  54 MB/s | 6.8 MB     00:00    
(41/161): SuperLU-devel-6.0.1-5.fc41.ppc64le.rp 244 kB/s |  27 kB     00:00    
(42/161): SuperLU-6.0.1-5.fc41.ppc64le.rpm      1.3 MB/s | 206 kB     00:00    
(43/161): add-determinism-0.2.0-9.fc41.ppc64le.  13 MB/s | 912 kB     00:00    
(44/161): annobin-plugin-gcc-12.54-2.fc41.ppc64  16 MB/s | 966 kB     00:00    
(45/161): annobin-docs-12.54-2.fc41.noarch.rpm  1.1 MB/s |  90 kB     00:00    
(46/161): armadillo-12.8.1-1.fc41.ppc64le.rpm   1.6 MB/s |  36 kB     00:00    
(47/161): autoconf-2.72-2.fc41.noarch.rpm        15 MB/s | 817 kB     00:00    
(48/161): armadillo-devel-12.8.1-1.fc41.ppc64le  31 MB/s | 2.0 MB     00:00    
(49/161): automake-1.16.5-16.fc40.noarch.rpm     12 MB/s | 676 kB     00:00    
(50/161): cmake-filesystem-3.28.3-4.fc41.ppc64l 705 kB/s |  18 kB     00:00    
(51/161): emacs-filesystem-30.0-2.fc41.noarch.r 393 kB/s | 7.1 kB     00:00    
(52/161): gc-8.2.2-6.fc40.ppc64le.rpm           6.1 MB/s | 122 kB     00:00    
(53/161): expat-2.6.2-1.fc41.ppc64le.rpm        4.1 MB/s | 119 kB     00:00    
(54/161): gcc-c++-14.1.1-4.fc41.ppc64le.rpm      86 MB/s |  13 MB     00:00    
(55/161): cpp-14.1.1-4.fc41.ppc64le.rpm          42 MB/s |  10 MB     00:00    
(56/161): gcc-plugin-annobin-14.1.1-4.fc41.ppc6 2.4 MB/s |  53 kB     00:00    
(57/161): glibc-devel-2.39.9000-18.fc41.ppc64le  21 MB/s | 562 kB     00:00    
(58/161): groff-base-1.23.0-6.fc40.ppc64le.rpm   29 MB/s | 1.1 MB     00:00    
(59/161): gsl-2.7.1-8.fc41.ppc64le.rpm           32 MB/s | 1.2 MB     00:00    
(60/161): gsl-devel-2.7.1-8.fc41.ppc64le.rpm     24 MB/s | 609 kB     00:00    
(61/161): gcc-gfortran-14.1.1-4.fc41.ppc64le.rp  36 MB/s |  12 MB     00:00    
(62/161): guile30-3.0.9-1.fc41.ppc64le.rpm       35 MB/s | 8.2 MB     00:00    
(63/161): hdf5-1.12.1-15.fc40.ppc64le.rpm        17 MB/s | 2.3 MB     00:00    
(64/161): hdf5-devel-1.12.1-15.fc40.ppc64le.rpm  13 MB/s | 1.3 MB     00:00    
(65/161): htslib-1.15.1-5.fc40.ppc64le.rpm      6.8 MB/s | 560 kB     00:00    
(66/161): htslib-devel-1.15.1-5.fc40.ppc64le.rp 3.0 MB/s |  99 kB     00:00    
(67/161): kernel-headers-6.10.0-0.rc1.17.fc41.p  22 MB/s | 1.4 MB     00:00    
(68/161): libaec-1.1.2-1.fc40.ppc64le.rpm       891 kB/s |  40 kB     00:00    
(69/161): gcc-14.1.1-4.fc41.ppc64le.rpm          31 MB/s |  32 MB     00:01    
(70/161): libaec-devel-1.1.2-1.fc40.ppc64le.rpm  45 kB/s |  12 kB     00:00    
(71/161): libasan-14.1.1-4.fc41.ppc64le.rpm     2.0 MB/s | 514 kB     00:00    
(72/161): libatomic-14.1.1-4.fc41.ppc64le.rpm   1.7 MB/s |  39 kB     00:00    
(73/161): libb2-0.98.1-11.fc40.ppc64le.rpm      1.1 MB/s |  25 kB     00:00    
(74/161): libicu-devel-74.2-1.fc40.ppc64le.rpm   24 MB/s | 856 kB     00:00    
(75/161): libgfortran-14.1.1-4.fc41.ppc64le.rpm 9.0 MB/s | 629 kB     00:00    
(76/161): libquadmath-14.1.1-4.fc41.ppc64le.rpm 7.3 MB/s | 216 kB     00:00    
(77/161): libmpc-1.3.1-5.fc40.ppc64le.rpm       2.4 MB/s |  96 kB     00:00    
(78/161): libquadmath-devel-14.1.1-4.fc41.ppc64 1.6 MB/s |  40 kB     00:00    
(79/161): libstdc++-devel-14.1.1-4.fc41.ppc64le  37 MB/s | 2.6 MB     00:00    
(80/161): libubsan-14.1.1-4.fc41.ppc64le.rpm    5.0 MB/s | 260 kB     00:00    
(81/161): libxcrypt-devel-4.4.36-5.fc40.ppc64le 961 kB/s |  29 kB     00:00    
(82/161): libicu-74.2-1.fc40.ppc64le.rpm         41 MB/s |  11 MB     00:00    
(83/161): m4-1.4.19-9.fc40.ppc64le.rpm          3.1 MB/s | 315 kB     00:00    
(84/161): make-4.4.1-6.fc40.ppc64le.rpm         6.2 MB/s | 596 kB     00:00    
(85/161): mpdecimal-2.5.1-9.fc40.ppc64le.rpm    4.4 MB/s | 103 kB     00:00    
(86/161): metis-5.1.0.3-5.fc40.ppc64le.rpm       16 MB/s | 598 kB     00:00    
(87/161): ncurses-6.4-12.20240127.fc40.ppc64le.  14 MB/s | 424 kB     00:00    
(88/161): openblas-0.3.26-4.fc40.ppc64le.rpm    1.5 MB/s |  39 kB     00:00    
(89/161): perl-AutoLoader-5.74-507.fc41.noarch. 675 kB/s |  21 kB     00:00    
(90/161): openblas-openmp-0.3.26-4.fc40.ppc64le  45 MB/s | 4.8 MB     00:00    
(91/161): perl-B-1.88-507.fc41.ppc64le.rpm      3.2 MB/s | 179 kB     00:00    
(92/161): perl-Carp-1.54-502.fc40.noarch.rpm    1.2 MB/s |  29 kB     00:00    
(93/161): openblas-openmp64-0.3.26-4.fc40.ppc64  31 MB/s | 4.7 MB     00:00    
(94/161): perl-Class-Struct-0.68-507.fc41.noarc 379 kB/s |  22 kB     00:00    
(95/161): perl-Data-Dumper-2.188-503.fc40.ppc64 1.2 MB/s |  58 kB     00:00    
(96/161): perl-Digest-MD5-2.59-3.fc40.ppc64le.r 1.9 MB/s |  36 kB     00:00    
(97/161): perl-Digest-1.20-502.fc40.noarch.rpm  1.1 MB/s |  25 kB     00:00    
(98/161): perl-DynaLoader-1.54-507.fc41.ppc64le 1.2 MB/s |  26 kB     00:00    
(99/161): perl-Errno-1.37-507.fc41.ppc64le.rpm  671 kB/s |  15 kB     00:00    
(100/161): perl-Encode-3.21-505.fc41.ppc64le.rp  22 MB/s | 1.0 MB     00:00    
(101/161): perl-Exporter-5.78-3.fc40.noarch.rpm 929 kB/s |  31 kB     00:00    
(102/161): perl-Fcntl-1.15-507.fc41.ppc64le.rpm 873 kB/s |  21 kB     00:00    
(103/161): perl-Fedora-VSP-0.001-34.fc40.noarch 1.1 MB/s |  23 kB     00:00    
(104/161): perl-File-Basename-2.86-507.fc41.noa 826 kB/s |  17 kB     00:00    
(105/161): perl-File-Compare-1.100.700-507.fc41 627 kB/s |  13 kB     00:00    
(106/161): perl-File-Find-1.43-507.fc41.noarch. 1.1 MB/s |  25 kB     00:00    
(107/161): perl-File-Path-2.18-503.fc40.noarch. 1.6 MB/s |  35 kB     00:00    
(108/161): perl-File-Copy-2.41-507.fc41.noarch. 821 kB/s |  20 kB     00:00    
(109/161): perl-File-stat-1.13-507.fc41.noarch. 804 kB/s |  17 kB     00:00    
(110/161): perl-File-Temp-0.231.100-503.fc40.no 2.4 MB/s |  59 kB     00:00    
(111/161): perl-FileHandle-2.05-507.fc41.noarch 671 kB/s |  16 kB     00:00    
(112/161): perl-Getopt-Long-2.57-4.fc41.noarch. 3.0 MB/s |  63 kB     00:00    
(113/161): perl-Getopt-Std-1.13-507.fc41.noarch 746 kB/s |  16 kB     00:00    
(114/161): perl-HTTP-Tiny-0.088-5.fc40.noarch.r 2.5 MB/s |  56 kB     00:00    
(115/161): perl-IO-1.52-507.fc41.ppc64le.rpm    3.1 MB/s |  78 kB     00:00    
(116/161): perl-IO-Socket-IP-0.42-2.fc40.noarch 1.8 MB/s |  42 kB     00:00    
(117/161): perl-IO-Socket-SSL-2.085-1.fc40.noar 7.2 MB/s | 225 kB     00:00    
(118/161): perl-MIME-Base64-3.16-503.fc40.ppc64 1.3 MB/s |  31 kB     00:00    
(119/161): perl-IPC-Open3-1.22-507.fc41.noarch. 871 kB/s |  22 kB     00:00    
(120/161): perl-Mozilla-CA-20240313-1.fc41.noar 592 kB/s |  14 kB     00:00    
(121/161): perl-Net-SSLeay-1.94-3.fc40.ppc64le.  13 MB/s | 370 kB     00:00    
(122/161): perl-POSIX-2.13-507.fc41.ppc64le.rpm 4.0 MB/s | 117 kB     00:00    
(123/161): perl-PathTools-3.89-502.fc40.ppc64le 3.1 MB/s |  83 kB     00:00    
(124/161): perl-Pod-Escapes-1.07-503.fc40.noarc 923 kB/s |  20 kB     00:00    
(125/161): perl-Pod-Perldoc-3.28.01-503.fc40.no 3.5 MB/s |  79 kB     00:00    
(126/161): perl-Pod-Simple-3.45-6.fc40.noarch.r 8.1 MB/s | 209 kB     00:00    
(127/161): perl-Pod-Usage-2.03-504.fc41.noarch. 1.6 MB/s |  40 kB     00:00    
(128/161): perl-Scalar-List-Utils-1.63-503.fc40 2.7 MB/s |  76 kB     00:00    
(129/161): perl-SelectSaver-1.02-507.fc41.noarc 481 kB/s |  12 kB     00:00    
(130/161): perl-Socket-2.038-1.fc41.ppc64le.rpm 2.3 MB/s |  56 kB     00:00    
(131/161): perl-Symbol-1.09-507.fc41.noarch.rpm 714 kB/s |  14 kB     00:00    
(132/161): perl-Storable-3.32-502.fc40.ppc64le. 3.8 MB/s | 102 kB     00:00    
(133/161): perl-Term-ANSIColor-5.01-504.fc40.no 2.2 MB/s |  48 kB     00:00    
(134/161): perl-Term-Cap-1.18-503.fc40.noarch.r 1.1 MB/s |  22 kB     00:00    
(135/161): perl-Text-ParseWords-3.31-502.fc40.n 673 kB/s |  16 kB     00:00    
(136/161): perl-Text-Tabs+Wrap-2024.001-1.fc41. 979 kB/s |  22 kB     00:00    
(137/161): perl-Thread-Queue-3.14-503.fc40.noar 950 kB/s |  21 kB     00:00    
(138/161): perl-Time-Local-1.350-5.fc40.noarch. 1.5 MB/s |  34 kB     00:00    
(139/161): perl-base-2.27-507.fc41.noarch.rpm   725 kB/s |  16 kB     00:00    
(140/161): perl-URI-5.28-1.fc41.noarch.rpm      4.4 MB/s | 120 kB     00:00    
(141/161): perl-constant-1.33-503.fc40.noarch.r 920 kB/s |  23 kB     00:00    
(142/161): perl-generators-1.16-5.fc40.noarch.r 715 kB/s |  16 kB     00:00    
(143/161): perl-if-0.61.000-507.fc41.noarch.rpm 644 kB/s |  14 kB     00:00    
(144/161): perl-interpreter-5.38.2-507.fc41.ppc 3.1 MB/s |  72 kB     00:00    
(145/161): perl-libnet-3.15-503.fc40.noarch.rpm 5.0 MB/s | 122 kB     00:00    
(146/161): perl-locale-1.10-507.fc41.noarch.rpm 667 kB/s |  14 kB     00:00    
(147/161): perl-libs-5.38.2-507.fc41.ppc64le.rp  35 MB/s | 2.3 MB     00:00    
(148/161): perl-macros-5.38.2-507.fc41.noarch.r 300 kB/s |  12 kB     00:00    
(149/161): perl-mro-1.28-507.fc41.ppc64le.rpm   795 kB/s |  29 kB     00:00    
(150/161): perl-overloading-0.02-507.fc41.noarc 621 kB/s |  13 kB     00:00    
(151/161): perl-parent-0.241-502.fc40.noarch.rp 633 kB/s |  15 kB     00:00    
(152/161): perl-overload-1.37-507.fc41.noarch.r 1.6 MB/s |  46 kB     00:00    
(153/161): perl-podlators-5.01-502.fc40.noarch. 4.3 MB/s | 121 kB     00:00    
(154/161): perl-threads-2.36-503.fc40.ppc64le.r 2.2 MB/s |  58 kB     00:00    
(155/161): perl-threads-shared-1.68-502.fc40.pp 1.8 MB/s |  46 kB     00:00    
(156/161): perl-vars-1.05-507.fc41.noarch.rpm   627 kB/s |  13 kB     00:00    
(157/161): python3-3.12.3-2.fc41.ppc64le.rpm    1.1 MB/s |  27 kB     00:00    
(158/161): python-pip-wheel-24.0-2.fc41.noarch.  34 MB/s | 1.5 MB     00:00    
(159/161): zlib-ng-compat-devel-2.1.6-4.fc41.pp 1.7 MB/s |  36 kB     00:00    
(160/161): tzdata-2024a-8.fc41.noarch.rpm        10 MB/s | 431 kB     00:00    
(161/161): python3-libs-3.12.3-2.fc41.ppc64le.r  43 MB/s | 8.9 MB     00:00    
--------------------------------------------------------------------------------
Total                                            51 MB/s | 163 MB     00:03     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : boost-system-1.83.0-5.fc41.ppc64le                   1/161 
  Installing       : libgfortran-14.1.1-4.fc41.ppc64le                    2/161 
  Installing       : boost-chrono-1.83.0-5.fc41.ppc64le                   3/161 
  Installing       : boost-thread-1.83.0-5.fc41.ppc64le                   4/161 
  Installing       : libicu-74.2-1.fc40.ppc64le                           5/161 
  Installing       : libquadmath-14.1.1-4.fc41.ppc64le                    6/161 
  Installing       : libmpc-1.3.1-5.fc40.ppc64le                          7/161 
  Installing       : boost-regex-1.83.0-5.fc41.ppc64le                    8/161 
  Installing       : boost-context-1.83.0-5.fc41.ppc64le                  9/161 
  Installing       : boost-atomic-1.83.0-5.fc41.ppc64le                  10/161 
  Installing       : boost-filesystem-1.83.0-5.fc41.ppc64le              11/161 
  Installing       : openblas-0.3.26-4.fc40.ppc64le                      12/161 
  Installing       : libstdc++-devel-14.1.1-4.fc41.ppc64le               13/161 
  Installing       : libaec-1.1.2-1.fc40.ppc64le                         14/161 
  Installing       : boost-date-time-1.83.0-5.fc41.ppc64le               15/161 
  Installing       : boost-container-1.83.0-5.fc41.ppc64le               16/161 
  Installing       : boost-json-1.83.0-5.fc41.ppc64le                    17/161 
  Installing       : boost-wave-1.83.0-5.fc41.ppc64le                    18/161 
  Installing       : hdf5-1.12.1-15.fc40.ppc64le                         19/161 
  Installing       : libaec-devel-1.1.2-1.fc40.ppc64le                   20/161 
  Installing       : openblas-openmp-0.3.26-4.fc40.ppc64le               21/161 
  Installing       : openblas-openmp64-0.3.26-4.fc40.ppc64le             22/161 
  Installing       : flexiblas-netlib-3.4.4-1.fc41.ppc64le               23/161 
  Installing       : flexiblas-openblas-openmp-3.4.4-1.fc41.ppc64le      24/161 
  Installing       : flexiblas-netlib64-3.4.4-1.fc41.ppc64le             25/161 
  Installing       : flexiblas-openblas-openmp64-3.4.4-1.fc41.ppc64le    26/161 
  Installing       : flexiblas-3.4.4-1.fc41.ppc64le                      27/161 
  Installing       : arpack-3.9.1-3.fc40.ppc64le                         28/161 
  Installing       : arpack-devel-3.9.1-3.fc40.ppc64le                   29/161 
  Installing       : flexiblas-devel-3.4.4-1.fc41.ppc64le                30/161 
  Installing       : boost-fiber-1.83.0-5.fc41.ppc64le                   31/161 
  Installing       : boost-log-1.83.0-5.fc41.ppc64le                     32/161 
  Installing       : boost-coroutine-1.83.0-5.fc41.ppc64le               33/161 
  Installing       : boost-graph-1.83.0-5.fc41.ppc64le                   34/161 
  Installing       : cpp-14.1.1-4.fc41.ppc64le                           35/161 
  Installing       : boost-locale-1.83.0-5.fc41.ppc64le                  36/161 
  Installing       : libicu-devel-74.2-1.fc40.ppc64le                    37/161 
  Installing       : boost-type_erasure-1.83.0-5.fc41.ppc64le            38/161 
  Installing       : boost-timer-1.83.0-5.fc41.ppc64le                   39/161 
  Installing       : zlib-ng-compat-devel-2.1.6-4.fc41.ppc64le           40/161 
  Installing       : tzdata-2024a-8.fc41.noarch                          41/161 
  Installing       : python-pip-wheel-24.0-2.fc41.noarch                 42/161 
  Installing       : ncurses-6.4-12.20240127.fc40.ppc64le                43/161 
  Installing       : mpdecimal-2.5.1-9.fc40.ppc64le                      44/161 
  Installing       : metis-5.1.0.3-5.fc40.ppc64le                        45/161 
  Installing       : SuperLU-6.0.1-5.fc41.ppc64le                        46/161 
  Installing       : armadillo-12.8.1-1.fc41.ppc64le                     47/161 
  Installing       : m4-1.4.19-9.fc40.ppc64le                            48/161 
  Installing       : libubsan-14.1.1-4.fc41.ppc64le                      49/161 
  Installing       : libb2-0.98.1-11.fc40.ppc64le                        50/161 
  Installing       : libatomic-14.1.1-4.fc41.ppc64le                     51/161 
  Installing       : libasan-14.1.1-4.fc41.ppc64le                       52/161 
  Installing       : kernel-headers-6.10.0-0.rc1.17.fc41.ppc64le         53/161 
  Installing       : libxcrypt-devel-4.4.36-5.fc40.ppc64le               54/161 
  Installing       : glibc-devel-2.39.9000-18.fc41.ppc64le               55/161 
  Installing       : htslib-1.15.1-5.fc40.ppc64le                        56/161 
  Installing       : gsl-2.7.1-8.fc41.ppc64le                            57/161 
  Running scriptlet: groff-base-1.23.0-6.fc40.ppc64le                    58/161 
  Installing       : groff-base-1.23.0-6.fc40.ppc64le                    58/161 
  Running scriptlet: groff-base-1.23.0-6.fc40.ppc64le                    58/161 
  Installing       : perl-Digest-1.20-502.fc40.noarch                    59/161 
  Installing       : perl-Digest-MD5-2.59-3.fc40.ppc64le                 60/161 
  Installing       : perl-B-1.88-507.fc41.ppc64le                        61/161 
  Installing       : perl-FileHandle-2.05-507.fc41.noarch                62/161 
  Installing       : perl-Data-Dumper-2.188-503.fc40.ppc64le             63/161 
  Installing       : perl-libnet-3.15-503.fc40.noarch                    64/161 
  Installing       : perl-AutoLoader-5.74-507.fc41.noarch                65/161 
  Installing       : perl-URI-5.28-1.fc41.noarch                         66/161 
  Installing       : perl-Text-Tabs+Wrap-2024.001-1.fc41.noarch          67/161 
  Installing       : perl-Mozilla-CA-20240313-1.fc41.noarch              68/161 
  Installing       : perl-if-0.61.000-507.fc41.noarch                    69/161 
  Installing       : perl-locale-1.10-507.fc41.noarch                    70/161 
  Installing       : perl-IO-Socket-IP-0.42-2.fc40.noarch                71/161 
  Installing       : perl-Time-Local-2:1.350-5.fc40.noarch               72/161 
  Installing       : perl-File-Path-2.18-503.fc40.noarch                 73/161 
  Installing       : perl-IO-Socket-SSL-2.085-1.fc40.noarch              74/161 
  Installing       : perl-Net-SSLeay-1.94-3.fc40.ppc64le                 75/161 
  Installing       : perl-Pod-Escapes-1:1.07-503.fc40.noarch             76/161 
  Installing       : perl-Class-Struct-0.68-507.fc41.noarch              77/161 
  Installing       : perl-Term-ANSIColor-5.01-504.fc40.noarch            78/161 
  Installing       : perl-POSIX-2.13-507.fc41.ppc64le                    79/161 
  Installing       : perl-IPC-Open3-1.22-507.fc41.noarch                 80/161 
  Installing       : perl-File-Temp-1:0.231.100-503.fc40.noarch          81/161 
  Installing       : perl-HTTP-Tiny-0.088-5.fc40.noarch                  82/161 
  Installing       : perl-Term-Cap-1.18-503.fc40.noarch                  83/161 
  Installing       : perl-Pod-Simple-1:3.45-6.fc40.noarch                84/161 
  Installing       : perl-Socket-4:2.038-1.fc41.ppc64le                  85/161 
  Installing       : perl-SelectSaver-1.02-507.fc41.noarch               86/161 
  Installing       : perl-Symbol-1.09-507.fc41.noarch                    87/161 
  Installing       : perl-File-stat-1.13-507.fc41.noarch                 88/161 
  Installing       : perl-podlators-1:5.01-502.fc40.noarch               89/161 
  Installing       : perl-Pod-Perldoc-3.28.01-503.fc40.noarch            90/161 
  Installing       : perl-Fcntl-1.15-507.fc41.ppc64le                    91/161 
  Installing       : perl-Text-ParseWords-3.31-502.fc40.noarch           92/161 
  Installing       : perl-base-2.27-507.fc41.noarch                      93/161 
  Installing       : perl-mro-1.28-507.fc41.ppc64le                      94/161 
  Installing       : perl-IO-1.52-507.fc41.ppc64le                       95/161 
  Installing       : perl-overloading-0.02-507.fc41.noarch               96/161 
  Installing       : perl-Pod-Usage-4:2.03-504.fc41.noarch               97/161 
  Installing       : perl-Errno-1.37-507.fc41.ppc64le                    98/161 
  Installing       : perl-File-Basename-2.86-507.fc41.noarch             99/161 
  Installing       : perl-Getopt-Std-1.13-507.fc41.noarch               100/161 
  Installing       : perl-MIME-Base64-3.16-503.fc40.ppc64le             101/161 
  Installing       : perl-Scalar-List-Utils-5:1.63-503.fc40.ppc64le     102/161 
  Installing       : perl-constant-1.33-503.fc40.noarch                 103/161 
  Installing       : perl-Storable-1:3.32-502.fc40.ppc64le              104/161 
  Installing       : perl-overload-1.37-507.fc41.noarch                 105/161 
  Installing       : perl-parent-1:0.241-502.fc40.noarch                106/161 
  Installing       : perl-vars-1.05-507.fc41.noarch                     107/161 
  Installing       : perl-Getopt-Long-1:2.57-4.fc41.noarch              108/161 
  Installing       : perl-Carp-1.54-502.fc40.noarch                     109/161 
  Installing       : perl-Exporter-5.78-3.fc40.noarch                   110/161 
  Installing       : perl-PathTools-3.89-502.fc40.ppc64le               111/161 
  Installing       : perl-DynaLoader-1.54-507.fc41.ppc64le              112/161 
  Installing       : perl-Encode-4:3.21-505.fc41.ppc64le                113/161 
  Installing       : perl-libs-4:5.38.2-507.fc41.ppc64le                114/161 
  Installing       : perl-interpreter-4:5.38.2-507.fc41.ppc64le         115/161 
  Installing       : perl-threads-1:2.36-503.fc40.ppc64le               116/161 
  Installing       : perl-threads-shared-1.68-502.fc40.ppc64le          117/161 
  Installing       : perl-Thread-Queue-3.14-503.fc40.noarch             118/161 
  Installing       : perl-macros-4:5.38.2-507.fc41.noarch               119/161 
  Installing       : perl-Fedora-VSP-0.001-34.fc40.noarch               120/161 
  Installing       : perl-File-Compare-1.100.700-507.fc41.noarch        121/161 
  Installing       : perl-File-Copy-2.41-507.fc41.noarch                122/161 
  Installing       : perl-File-Find-1.43-507.fc41.noarch                123/161 
  Installing       : gc-8.2.2-6.fc40.ppc64le                            124/161 
  Installing       : guile30-3.0.9-1.fc41.ppc64le                       125/161 
  Installing       : make-1:4.4.1-6.fc40.ppc64le                        126/161 
  Installing       : gcc-14.1.1-4.fc41.ppc64le                          127/161 
  Running scriptlet: gcc-14.1.1-4.fc41.ppc64le                          127/161 
  Installing       : libquadmath-devel-14.1.1-4.fc41.ppc64le            128/161 
  Installing       : gcc-gfortran-14.1.1-4.fc41.ppc64le                 129/161 
  Installing       : hdf5-devel-1.12.1-15.fc40.ppc64le                  130/161 
  Installing       : expat-2.6.2-1.fc41.ppc64le                         131/161 
  Installing       : python3-3.12.3-2.fc41.ppc64le                      132/161 
  Installing       : python3-libs-3.12.3-2.fc41.ppc64le                 133/161 
  Installing       : boost-python3-1.83.0-5.fc41.ppc64le                134/161 
  Installing       : python3-numpy-1:1.26.4-4.fc41.ppc64le              135/161 
  Installing       : boost-numpy3-1.83.0-5.fc41.ppc64le                 136/161 
  Installing       : emacs-filesystem-1:30.0-2.fc41.noarch              137/161 
  Installing       : autoconf-2.72-2.fc41.noarch                        138/161 
  Installing       : automake-1.16.5-16.fc40.noarch                     139/161 
  Installing       : cmake-filesystem-3.28.3-4.fc41.ppc64le             140/161 
  Installing       : SuperLU-devel-6.0.1-5.fc41.ppc64le                 141/161 
  Installing       : annobin-docs-12.54-2.fc41.noarch                   142/161 
  Installing       : boost-test-1.83.0-5.fc41.ppc64le                   143/161 
  Installing       : boost-stacktrace-1.83.0-5.fc41.ppc64le             144/161 
  Installing       : boost-serialization-1.83.0-5.fc41.ppc64le          145/161 
  Installing       : boost-random-1.83.0-5.fc41.ppc64le                 146/161 
  Installing       : boost-program-options-1.83.0-5.fc41.ppc64le        147/161 
  Installing       : boost-nowide-1.83.0-5.fc41.ppc64le                 148/161 
  Installing       : boost-math-1.83.0-5.fc41.ppc64le                   149/161 
  Installing       : boost-iostreams-1.83.0-5.fc41.ppc64le              150/161 
  Installing       : boost-contract-1.83.0-5.fc41.ppc64le               151/161 
  Installing       : boost-1.83.0-5.fc41.ppc64le                        152/161 
  Installing       : boost-devel-1.83.0-5.fc41.ppc64le                  153/161 
  Installing       : annobin-plugin-gcc-12.54-2.fc41.ppc64le            154/161 
  Running scriptlet: annobin-plugin-gcc-12.54-2.fc41.ppc64le            154/161 
  Installing       : armadillo-devel-12.8.1-1.fc41.ppc64le              155/161 
  Installing       : gsl-devel-2.7.1-8.fc41.ppc64le                     156/161 
  Installing       : add-determinism-0.2.0-9.fc41.ppc64le               157/161 
  Installing       : gcc-c++-14.1.1-4.fc41.ppc64le                      158/161 
  Installing       : gcc-plugin-annobin-14.1.1-4.fc41.ppc64le           159/161 
  Running scriptlet: gcc-plugin-annobin-14.1.1-4.fc41.ppc64le           159/161 
  Installing       : perl-generators-1.16-5.fc40.noarch                 160/161 
  Installing       : htslib-devel-1.15.1-5.fc40.ppc64le                 161/161 
  Running scriptlet: htslib-devel-1.15.1-5.fc40.ppc64le                 161/161 

Installed:
  SuperLU-6.0.1-5.fc41.ppc64le                                                  
  SuperLU-devel-6.0.1-5.fc41.ppc64le                                            
  add-determinism-0.2.0-9.fc41.ppc64le                                          
  annobin-docs-12.54-2.fc41.noarch                                              
  annobin-plugin-gcc-12.54-2.fc41.ppc64le                                       
  armadillo-12.8.1-1.fc41.ppc64le                                               
  armadillo-devel-12.8.1-1.fc41.ppc64le                                         
  arpack-3.9.1-3.fc40.ppc64le                                                   
  arpack-devel-3.9.1-3.fc40.ppc64le                                             
  autoconf-2.72-2.fc41.noarch                                                   
  automake-1.16.5-16.fc40.noarch                                                
  boost-1.83.0-5.fc41.ppc64le                                                   
  boost-atomic-1.83.0-5.fc41.ppc64le                                            
  boost-chrono-1.83.0-5.fc41.ppc64le                                            
  boost-container-1.83.0-5.fc41.ppc64le                                         
  boost-context-1.83.0-5.fc41.ppc64le                                           
  boost-contract-1.83.0-5.fc41.ppc64le                                          
  boost-coroutine-1.83.0-5.fc41.ppc64le                                         
  boost-date-time-1.83.0-5.fc41.ppc64le                                         
  boost-devel-1.83.0-5.fc41.ppc64le                                             
  boost-fiber-1.83.0-5.fc41.ppc64le                                             
  boost-filesystem-1.83.0-5.fc41.ppc64le                                        
  boost-graph-1.83.0-5.fc41.ppc64le                                             
  boost-iostreams-1.83.0-5.fc41.ppc64le                                         
  boost-json-1.83.0-5.fc41.ppc64le                                              
  boost-locale-1.83.0-5.fc41.ppc64le                                            
  boost-log-1.83.0-5.fc41.ppc64le                                               
  boost-math-1.83.0-5.fc41.ppc64le                                              
  boost-nowide-1.83.0-5.fc41.ppc64le                                            
  boost-numpy3-1.83.0-5.fc41.ppc64le                                            
  boost-program-options-1.83.0-5.fc41.ppc64le                                   
  boost-python3-1.83.0-5.fc41.ppc64le                                           
  boost-random-1.83.0-5.fc41.ppc64le                                            
  boost-regex-1.83.0-5.fc41.ppc64le                                             
  boost-serialization-1.83.0-5.fc41.ppc64le                                     
  boost-stacktrace-1.83.0-5.fc41.ppc64le                                        
  boost-system-1.83.0-5.fc41.ppc64le                                            
  boost-test-1.83.0-5.fc41.ppc64le                                              
  boost-thread-1.83.0-5.fc41.ppc64le                                            
  boost-timer-1.83.0-5.fc41.ppc64le                                             
  boost-type_erasure-1.83.0-5.fc41.ppc64le                                      
  boost-wave-1.83.0-5.fc41.ppc64le                                              
  cmake-filesystem-3.28.3-4.fc41.ppc64le                                        
  cpp-14.1.1-4.fc41.ppc64le                                                     
  emacs-filesystem-1:30.0-2.fc41.noarch                                         
  expat-2.6.2-1.fc41.ppc64le                                                    
  flexiblas-3.4.4-1.fc41.ppc64le                                                
  flexiblas-devel-3.4.4-1.fc41.ppc64le                                          
  flexiblas-netlib-3.4.4-1.fc41.ppc64le                                         
  flexiblas-netlib64-3.4.4-1.fc41.ppc64le                                       
  flexiblas-openblas-openmp-3.4.4-1.fc41.ppc64le                                
  flexiblas-openblas-openmp64-3.4.4-1.fc41.ppc64le                              
  gc-8.2.2-6.fc40.ppc64le                                                       
  gcc-14.1.1-4.fc41.ppc64le                                                     
  gcc-c++-14.1.1-4.fc41.ppc64le                                                 
  gcc-gfortran-14.1.1-4.fc41.ppc64le                                            
  gcc-plugin-annobin-14.1.1-4.fc41.ppc64le                                      
  glibc-devel-2.39.9000-18.fc41.ppc64le                                         
  groff-base-1.23.0-6.fc40.ppc64le                                              
  gsl-2.7.1-8.fc41.ppc64le                                                      
  gsl-devel-2.7.1-8.fc41.ppc64le                                                
  guile30-3.0.9-1.fc41.ppc64le                                                  
  hdf5-1.12.1-15.fc40.ppc64le                                                   
  hdf5-devel-1.12.1-15.fc40.ppc64le                                             
  htslib-1.15.1-5.fc40.ppc64le                                                  
  htslib-devel-1.15.1-5.fc40.ppc64le                                            
  kernel-headers-6.10.0-0.rc1.17.fc41.ppc64le                                   
  libaec-1.1.2-1.fc40.ppc64le                                                   
  libaec-devel-1.1.2-1.fc40.ppc64le                                             
  libasan-14.1.1-4.fc41.ppc64le                                                 
  libatomic-14.1.1-4.fc41.ppc64le                                               
  libb2-0.98.1-11.fc40.ppc64le                                                  
  libgfortran-14.1.1-4.fc41.ppc64le                                             
  libicu-74.2-1.fc40.ppc64le                                                    
  libicu-devel-74.2-1.fc40.ppc64le                                              
  libmpc-1.3.1-5.fc40.ppc64le                                                   
  libquadmath-14.1.1-4.fc41.ppc64le                                             
  libquadmath-devel-14.1.1-4.fc41.ppc64le                                       
  libstdc++-devel-14.1.1-4.fc41.ppc64le                                         
  libubsan-14.1.1-4.fc41.ppc64le                                                
  libxcrypt-devel-4.4.36-5.fc40.ppc64le                                         
  m4-1.4.19-9.fc40.ppc64le                                                      
  make-1:4.4.1-6.fc40.ppc64le                                                   
  metis-5.1.0.3-5.fc40.ppc64le                                                  
  mpdecimal-2.5.1-9.fc40.ppc64le                                                
  ncurses-6.4-12.20240127.fc40.ppc64le                                          
  openblas-0.3.26-4.fc40.ppc64le                                                
  openblas-openmp-0.3.26-4.fc40.ppc64le                                         
  openblas-openmp64-0.3.26-4.fc40.ppc64le                                       
  perl-AutoLoader-5.74-507.fc41.noarch                                          
  perl-B-1.88-507.fc41.ppc64le                                                  
  perl-Carp-1.54-502.fc40.noarch                                                
  perl-Class-Struct-0.68-507.fc41.noarch                                        
  perl-Data-Dumper-2.188-503.fc40.ppc64le                                       
  perl-Digest-1.20-502.fc40.noarch                                              
  perl-Digest-MD5-2.59-3.fc40.ppc64le                                           
  perl-DynaLoader-1.54-507.fc41.ppc64le                                         
  perl-Encode-4:3.21-505.fc41.ppc64le                                           
  perl-Errno-1.37-507.fc41.ppc64le                                              
  perl-Exporter-5.78-3.fc40.noarch                                              
  perl-Fcntl-1.15-507.fc41.ppc64le                                              
  perl-Fedora-VSP-0.001-34.fc40.noarch                                          
  perl-File-Basename-2.86-507.fc41.noarch                                       
  perl-File-Compare-1.100.700-507.fc41.noarch                                   
  perl-File-Copy-2.41-507.fc41.noarch                                           
  perl-File-Find-1.43-507.fc41.noarch                                           
  perl-File-Path-2.18-503.fc40.noarch                                           
  perl-File-Temp-1:0.231.100-503.fc40.noarch                                    
  perl-File-stat-1.13-507.fc41.noarch                                           
  perl-FileHandle-2.05-507.fc41.noarch                                          
  perl-Getopt-Long-1:2.57-4.fc41.noarch                                         
  perl-Getopt-Std-1.13-507.fc41.noarch                                          
  perl-HTTP-Tiny-0.088-5.fc40.noarch                                            
  perl-IO-1.52-507.fc41.ppc64le                                                 
  perl-IO-Socket-IP-0.42-2.fc40.noarch                                          
  perl-IO-Socket-SSL-2.085-1.fc40.noarch                                        
  perl-IPC-Open3-1.22-507.fc41.noarch                                           
  perl-MIME-Base64-3.16-503.fc40.ppc64le                                        
  perl-Mozilla-CA-20240313-1.fc41.noarch                                        
  perl-Net-SSLeay-1.94-3.fc40.ppc64le                                           
  perl-POSIX-2.13-507.fc41.ppc64le                                              
  perl-PathTools-3.89-502.fc40.ppc64le                                          
  perl-Pod-Escapes-1:1.07-503.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-503.fc40.noarch                                      
  perl-Pod-Simple-1:3.45-6.fc40.noarch                                          
  perl-Pod-Usage-4:2.03-504.fc41.noarch                                         
  perl-Scalar-List-Utils-5:1.63-503.fc40.ppc64le                                
  perl-SelectSaver-1.02-507.fc41.noarch                                         
  perl-Socket-4:2.038-1.fc41.ppc64le                                            
  perl-Storable-1:3.32-502.fc40.ppc64le                                         
  perl-Symbol-1.09-507.fc41.noarch                                              
  perl-Term-ANSIColor-5.01-504.fc40.noarch                                      
  perl-Term-Cap-1.18-503.fc40.noarch                                            
  perl-Text-ParseWords-3.31-502.fc40.noarch                                     
  perl-Text-Tabs+Wrap-2024.001-1.fc41.noarch                                    
  perl-Thread-Queue-3.14-503.fc40.noarch                                        
  perl-Time-Local-2:1.350-5.fc40.noarch                                         
  perl-URI-5.28-1.fc41.noarch                                                   
  perl-base-2.27-507.fc41.noarch                                                
  perl-constant-1.33-503.fc40.noarch                                            
  perl-generators-1.16-5.fc40.noarch                                            
  perl-if-0.61.000-507.fc41.noarch                                              
  perl-interpreter-4:5.38.2-507.fc41.ppc64le                                    
  perl-libnet-3.15-503.fc40.noarch                                              
  perl-libs-4:5.38.2-507.fc41.ppc64le                                           
  perl-locale-1.10-507.fc41.noarch                                              
  perl-macros-4:5.38.2-507.fc41.noarch                                          
  perl-mro-1.28-507.fc41.ppc64le                                                
  perl-overload-1.37-507.fc41.noarch                                            
  perl-overloading-0.02-507.fc41.noarch                                         
  perl-parent-1:0.241-502.fc40.noarch                                           
  perl-podlators-1:5.01-502.fc40.noarch                                         
  perl-threads-1:2.36-503.fc40.ppc64le                                          
  perl-threads-shared-1.68-502.fc40.ppc64le                                     
  perl-vars-1.05-507.fc41.noarch                                                
  python-pip-wheel-24.0-2.fc41.noarch                                           
  python3-3.12.3-2.fc41.ppc64le                                                 
  python3-libs-3.12.3-2.fc41.ppc64le                                            
  python3-numpy-1:1.26.4-4.fc41.ppc64le                                         
  tzdata-2024a-8.fc41.noarch                                                    
  zlib-ng-compat-devel-2.1.6-4.fc41.ppc64le                                     

Complete!
Finish: build setup for mmseq-1.0.11-19.fc41.src.rpm
Start: rpmbuild mmseq-1.0.11-19.fc41.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1706140800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.Pt0AyA
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.3ImaZN
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.BVfIK3
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j5 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from t2g_hits.cpp:27:
/usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here
  891 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here
 4491 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccbwgtnc.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x2cf4): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.19tqgk
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.0.11-19.fc41 --unique-debug-suffix -1.0.11-19.fc41.ppc64le --unique-debug-src-base mmseq-1.0.11-19.fc41.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-19.fc41.ppc64le
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j5
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j5 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Cannot initialize handler pyc: ModuleNotFoundError: No module named 'marshalparser'
[src/multiprocess.rs:66:9] &cmd = Command {
    program: "/usr/bin/add-determinism",
    args: [
        "/usr/bin/add-determinism",
        "--socket",
        "3",
        "--brp",
        "--handler",
        "ar,jar,javadoc",
    ],
    env: CommandEnv {
        clear: false,
        vars: {
            "SOURCE_DATE_EPOCH": Some(
                "1706140800",
            ),
        },
    },
    create_pidfd: false,
}
Bye!
Bye!
Bye!
Bye!
Bye!
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.hv1gvt
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-19.fc41.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.QBUsES
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-19.fc41 mmseq(ppc-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-19.fc41.ppc64le
Provides: mmseq-debugsource = 1.0.11-19.fc41 mmseq-debugsource(ppc-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-19.fc41.ppc64le
Provides: debuginfo(build-id) = 07c2c16ce4549a77f333db3871c5bd1de7f1355d debuginfo(build-id) = 3113ec4c7096108b6ca703036472c0cd5a20fc30 debuginfo(build-id) = 3bb62354e430bf8f7b5a3480b9473966590886bf debuginfo(build-id) = 614250cd413b506512efb5a9fbca9e35bb83316f debuginfo(build-id) = 9f4e2a33e650fafa40588bfac6c6caee5e0e23ba debuginfo(build-id) = d2d593ca357c7b8cb7afcbd32a3a5f952478a83a debuginfo(build-id) = f90de5265b5436d1879b6bc528a83d664f457544 debuginfo(build-id) = fd0054869b46c1266a2eaf08085d7306b1cfed32 mmseq-debuginfo = 1.0.11-19.fc41 mmseq-debuginfo(ppc-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(ppc-64) = 1.0.11-19.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-19.fc41.ppc64le.rpm
Wrote: /builddir/build/RPMS/mmseq-1.0.11-19.fc41.ppc64le.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-19.fc41.ppc64le.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.yX3Gwi
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-19.fc41.src.rpm
Finish: build phase for mmseq-1.0.11-19.fc41.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-39-ppc64le-1717077957.465238/root/var/log/dnf.log
/var/lib/mock/fedora-39-ppc64le-1717077957.465238/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-39-ppc64le-1717077957.465238/root/var/log/dnf.rpm.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-19.fc41.src.rpm) Config(child) 2 minutes 34 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "ppc64le"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "ppc64le"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "src"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "ppc64le"
        }
    ]
}
RPMResults finished