Warning: Permanently added '169.63.99.250' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7366609-fedora-39-s390x --chroot fedora-39-s390x Version: 0.72 PID: 9907 Logging PID: 9908 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7366609, 'buildroot_pkgs': [], 'chroot': 'fedora-39-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': '2c6347bc136e885491cff49094bfb58d9c4c3267', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Rhtslib', 'package_version': '1.28.0-7', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-39-s390x/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/iucar', 'tags': [], 'task_id': '7366609-fedora-39-s390x', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib /var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib', '/var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib'... Running: git checkout 2c6347bc136e885491cff49094bfb58d9c4c3267 -- cmd: ['git', 'checkout', '2c6347bc136e885491cff49094bfb58d9c4c3267', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib rc: 0 stdout: stderr: Note: switching to '2c6347bc136e885491cff49094bfb58d9c4c3267'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 2c6347b automatic import of R-Rhtslib Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Rhtslib_1.28.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Rhtslib_1.28.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-Rhtslib/Rhtslib_1.28.0.tar.gz/md5/68bbb8477444f2c8e7bbf7720ece120f/Rhtslib_1.28.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 1436k 100 1436k 0 0 283k 0 0:00:05 0:00:05 --:--:-- 298k INFO: Reading stdout from command: md5sum Rhtslib_1.28.0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714243800.246621 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714243800.246621 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib/R-Rhtslib.spec) Config(fedora-39-s390x) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1714243800.246621/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-s390x-bootstrap-1714243800.246621/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/7b96497ebead84e3c7bca8487becfdc19b9c8db61430865c7b3c85e9ca7eeb2d/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/7b96497ebead84e3c7bca8487becfdc19b9c8db61430865c7b3c85e9ca7eeb2d/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.5 MB/s | 16 MB 00:10 Additional repo http_kojipkgs_fedoraproject_org 114 MB/s | 68 MB 00:00 fedora 4.6 MB/s | 79 MB 00:17 updates 2.4 MB/s | 28 MB 00:11 Last metadata expiration check: 0:00:04 ago on Sat Apr 27 18:51:38 2024. Package python3-dnf-4.19.2-1.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: python3-dnf-plugins-core noarch 4.6.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 491 k dnf-data noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k python3-dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 553 k yum noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs s390x 1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 159 k python3-dateutil noarch 1:2.8.2-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus s390x 1.3.2-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k python3-distro noarch 1.9.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k python3-six noarch 1.16.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd s390x 235-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k Transaction Summary ========================================================================================================================= Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): dbus-libs-1.14.10-3.fc40.s390x.rpm 31 kB/s | 159 kB 00:05 (2/11): python3-distro-1.9.0-3.fc40.noarch.rpm 4.8 MB/s | 45 kB 00:00 (3/11): python3-dbus-1.3.2-6.fc40.s390x.rpm 15 kB/s | 146 kB 00:10 (4/11): python3-dnf-plugins-core-4.6.0-1.fc41.n 61 kB/s | 302 kB 00:04 (5/11): python3-dateutil-2.8.2-13.fc40.noarch.r 34 kB/s | 345 kB 00:10 (6/11): python3-six-1.16.0-14.fc40.noarch.rpm 4.4 MB/s | 41 kB 00:00 (7/11): python3-systemd-235-9.fc40.s390x.rpm 8.0 MB/s | 100 kB 00:00 (8/11): dnf-data-4.19.2-1.fc41.noarch.rpm 4.4 MB/s | 40 kB 00:00 (9/11): yum-4.19.2-1.fc41.noarch.rpm 6.1 MB/s | 37 kB 00:00 (10/11): dnf-4.19.2-1.fc41.noarch.rpm 18 MB/s | 491 kB 00:00 (11/11): python3-dnf-4.19.2-1.fc41.noarch.rpm 20 MB/s | 553 kB 00:00 -------------------------------------------------------------------------------- Total 225 kB/s | 2.2 MB 00:10 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.19.2-1.fc41.noarch 1/15 Upgrading : python3-dnf-4.19.2-1.fc41.noarch 2/15 Upgrading : dnf-4.19.2-1.fc41.noarch 3/15 Running scriptlet: dnf-4.19.2-1.fc41.noarch 3/15 Installing : python3-systemd-235-9.fc40.s390x 4/15 Installing : python3-six-1.16.0-14.fc40.noarch 5/15 Installing : python3-dateutil-1:2.8.2-13.fc40.noarch 6/15 Installing : python3-distro-1.9.0-3.fc40.noarch 7/15 Installing : dbus-libs-1:1.14.10-3.fc40.s390x 8/15 Installing : python3-dbus-1.3.2-6.fc40.s390x 9/15 Installing : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 10/15 Upgrading : yum-4.19.2-1.fc41.noarch 11/15 Cleanup : yum-4.19.2-1.fc39.noarch 12/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : dnf-4.19.2-1.fc39.noarch 13/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : python3-dnf-4.19.2-1.fc39.noarch 14/15 Cleanup : dnf-data-4.19.2-1.fc39.noarch 15/15 Running scriptlet: dnf-data-4.19.2-1.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-3.fc40.s390x 1/15 Verifying : python3-dateutil-1:2.8.2-13.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-6.fc40.s390x 3/15 Verifying : python3-distro-1.9.0-3.fc40.noarch 4/15 Verifying : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 5/15 Verifying : python3-six-1.16.0-14.fc40.noarch 6/15 Verifying : python3-systemd-235-9.fc40.s390x 7/15 Verifying : dnf-4.19.2-1.fc41.noarch 8/15 Verifying : dnf-4.19.2-1.fc39.noarch 9/15 Verifying : dnf-data-4.19.2-1.fc41.noarch 10/15 Verifying : dnf-data-4.19.2-1.fc39.noarch 11/15 Verifying : python3-dnf-4.19.2-1.fc41.noarch 12/15 Verifying : python3-dnf-4.19.2-1.fc39.noarch 13/15 Verifying : yum-4.19.2-1.fc41.noarch 14/15 Verifying : yum-4.19.2-1.fc39.noarch 15/15 Upgraded: dnf-4.19.2-1.fc41.noarch dnf-data-4.19.2-1.fc41.noarch python3-dnf-4.19.2-1.fc41.noarch yum-4.19.2-1.fc41.noarch Installed: dbus-libs-1:1.14.10-3.fc40.s390x python3-dateutil-1:2.8.2-13.fc40.noarch python3-dbus-1.3.2-6.fc40.s390x python3-distro-1.9.0-3.fc40.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch python3-six-1.16.0-14.fc40.noarch python3-systemd-235-9.fc40.s390x Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-1714243800.246621/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.s390x rpm-sequoia-1.6.0-1.fc39.s390x python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 3.0 MB/s | 16 MB 00:05 Additional repo http_kojipkgs_fedoraproject_org 13 MB/s | 68 MB 00:05 fedora 7.1 MB/s | 79 MB 00:11 updates 44 MB/s | 28 MB 00:00 Last metadata expiration check: 0:00:04 ago on Sat Apr 27 18:53:19 2024. Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash s390x 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 s390x 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils s390x 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M cpio s390x 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 291 k diffutils s390x 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 412 k fedora-release-common noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k findutils s390x 1:4.9.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493 k gawk s390x 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M glibc-minimal-langpack s390x 2.39.9000-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110 k grep s390x 3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 297 k gzip s390x 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 171 k info s390x 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195 k patch s390x 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141 k redhat-rpm-config noarch 288-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k rpm-build s390x 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71 k sed s390x 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 312 k shadow-utils s390x 2:4.15.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M tar s390x 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 871 k unzip s390x 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195 k util-linux s390x 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which s390x 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k xz s390x 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 533 k Installing dependencies: alternatives s390x 1.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs s390x 4.0.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129 k authselect s390x 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141 k authselect-libs s390x 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204 k basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils s390x 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.0 M binutils-gold s390x 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 998 k bzip2-libs s390x 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 47 k ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 862 k coreutils-common s390x 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib s390x 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84 k crypto-policies noarch 20240320-1.git58e3d95.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65 k curl s390x 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309 k cyrus-sasl-lib s390x 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821 k debugedit s390x 5.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82 k dwz s390x 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145 k ed s390x 1.20.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils s390x 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 582 k elfutils-debuginfod-client s390x 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k elfutils-default-yama-scope noarch 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf s390x 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214 k elfutils-libs s390x 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 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util-linux-core s390x 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 526 k xxhash-libs s390x 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k xz-libs s390x 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 116 k zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 k zip s390x 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 283 k zlib-ng-compat s390x 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66 k zstd s390x 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 516 k Installing Groups: Buildsystem building group Transaction Summary ======================================================================================================================================== Install 153 Packages Total download size: 53 M Installed size: 182 M Downloading Packages: (1/153): ansible-srpm-macros-1-15.fc41.noarch.r 773 kB/s | 21 kB 00:00 (2/153): audit-libs-4.0.1-1.fc41.s390x.rpm 14 MB/s | 129 kB 00:00 (3/153): alternatives-1.26-3.fc40.s390x.rpm 1.1 MB/s | 41 kB 00:00 (4/153): authselect-1.5.0-5.fc41.s390x.rpm 16 MB/s | 141 kB 00:00 (5/153): authselect-libs-1.5.0-5.fc41.s390x.rpm 24 MB/s | 204 kB 00:00 (6/153): basesystem-11-20.fc40.noarch.rpm 1.5 MB/s | 7.2 kB 00:00 (7/153): bash-5.2.26-3.fc40.s390x.rpm 46 MB/s | 1.8 MB 00:00 (8/153): binutils-2.42.50-6.fc41.s390x.rpm 128 MB/s | 6.0 MB 00:00 (9/153): bzip2-1.0.8-18.fc40.s390x.rpm 8.6 MB/s | 53 kB 00:00 (10/153): binutils-gold-2.42.50-6.fc41.s390x.rp 52 MB/s | 998 kB 00:00 (11/153): bzip2-libs-1.0.8-18.fc40.s390x.rpm 8.8 MB/s | 47 kB 00:00 (12/153): ca-certificates-2023.2.62_v7.0.401-6. 62 MB/s | 862 kB 00:00 (13/153): coreutils-9.5-1.fc41.s390x.rpm 102 MB/s | 1.2 MB 00:00 (14/153): cpio-2.15-1.fc40.s390x.rpm 44 MB/s | 291 kB 00:00 (15/153): cracklib-2.9.11-5.fc40.s390x.rpm 14 MB/s | 84 kB 00:00 (16/153): crypto-policies-20240320-1.git58e3d95 12 MB/s | 65 kB 00:00 (17/153): coreutils-common-9.5-1.fc41.s390x.rpm 81 MB/s | 2.1 MB 00:00 (18/153): curl-8.7.1-1.fc41.s390x.rpm 47 MB/s | 309 kB 00:00 (19/153): debugedit-5.0-14.fc40.s390x.rpm 19 MB/s | 82 kB 00:00 (20/153): cyrus-sasl-lib-2.1.28-19.fc40.s390x.r 53 MB/s | 821 kB 00:00 (21/153): diffutils-3.10-5.fc40.s390x.rpm 33 MB/s | 412 kB 00:00 (22/153): ed-1.20.2-1.fc41.s390x.rpm 20 MB/s | 83 kB 00:00 (23/153): dwz-0.15-6.fc40.s390x.rpm 20 MB/s | 145 kB 00:00 (24/153): efi-srpm-macros-5-11.fc40.noarch.rpm 5.6 MB/s | 22 kB 00:00 (25/153): elfutils-0.191-7.fc41.s390x.rpm 76 MB/s | 582 kB 00:00 (26/153): elfutils-debuginfod-client-0.191-7.fc 7.4 MB/s | 39 kB 00:00 (27/153): elfutils-libelf-0.191-7.fc41.s390x.rp 42 MB/s | 214 kB 00:00 (28/153): elfutils-default-yama-scope-0.191-7.f 2.1 MB/s | 13 kB 00:00 (29/153): fedora-gpg-keys-41-0.1.noarch.rpm 23 MB/s | 121 kB 00:00 (30/153): elfutils-libs-0.191-7.fc41.s390x.rpm 30 MB/s | 282 kB 00:00 (31/153): fedora-release-41-0.9.noarch.rpm 2.4 MB/s | 11 kB 00:00 (32/153): fedora-release-common-41-0.9.noarch.r 5.1 MB/s | 22 kB 00:00 (33/153): fedora-release-identity-basic-41-0.9. 3.4 MB/s | 12 kB 00:00 (34/153): fedora-repos-41-0.1.noarch.rpm 2.1 MB/s | 9.3 kB 00:00 (35/153): fedora-repos-rawhide-41-0.1.noarch.rp 1.8 MB/s | 8.9 kB 00:00 (36/153): file-5.45-5.fc41.s390x.rpm 12 MB/s | 49 kB 00:00 (37/153): file-libs-5.45-5.fc41.s390x.rpm 84 MB/s | 770 kB 00:00 (38/153): findutils-4.9.0-8.fc40.s390x.rpm 47 MB/s | 493 kB 00:00 (39/153): filesystem-3.18-9.fc41.s390x.rpm 59 MB/s | 1.1 MB 00:00 (40/153): fonts-srpm-macros-2.0.5-14.fc40.noarc 6.7 MB/s | 27 kB 00:00 (41/153): forge-srpm-macros-0.3.1-1.fc41.noarch 5.4 MB/s | 19 kB 00:00 (42/153): fpc-srpm-macros-1.3-12.fc40.noarch.rp 1.6 MB/s | 7.8 kB 00:00 (43/153): gdbm-1.23-6.fc40.s390x.rpm 23 MB/s | 152 kB 00:00 (44/153): gawk-5.3.0-3.fc40.s390x.rpm 74 MB/s | 1.1 MB 00:00 (45/153): gdbm-libs-1.23-6.fc40.s390x.rpm 11 MB/s | 58 kB 00:00 (46/153): ghc-srpm-macros-1.9.1-1.fc41.noarch.r 2.4 MB/s | 9.0 kB 00:00 (47/153): glibc-2.39.9000-16.fc41.s390x.rpm 133 MB/s | 1.9 MB 00:00 (48/153): glibc-common-2.39.9000-16.fc41.s390x. 33 MB/s | 408 kB 00:00 (49/153): glibc-minimal-langpack-2.39.9000-16.f 15 MB/s | 110 kB 00:00 (50/153): glibc-gconv-extra-2.39.9000-16.fc41.s 97 MB/s | 1.7 MB 00:00 (51/153): gmp-6.3.0-1.fc41.s390x.rpm 25 MB/s | 329 kB 00:00 (52/153): gnat-srpm-macros-6-5.fc40.noarch.rpm 1.9 MB/s | 8.8 kB 00:00 (53/153): go-srpm-macros-3.6.0-1.fc41.noarch.rp 6.1 MB/s | 28 kB 00:00 (54/153): grep-3.11-7.fc40.s390x.rpm 48 MB/s | 297 kB 00:00 (55/153): gzip-1.13-1.fc40.s390x.rpm 31 MB/s | 171 kB 00:00 (56/153): jansson-2.13.1-9.fc40.s390x.rpm 9.6 MB/s | 45 kB 00:00 (57/153): info-7.1-2.fc40.s390x.rpm 24 MB/s | 195 kB 00:00 (58/153): keyutils-libs-1.6.3-3.fc40.s390x.rpm 12 MB/s | 31 kB 00:00 (59/153): kernel-srpm-macros-1.0-23.fc41.noarch 2.3 MB/s | 9.8 kB 00:00 (60/153): libacl-2.3.2-1.fc40.s390x.rpm 5.9 MB/s | 25 kB 00:00 (61/153): krb5-libs-1.21.2-5.fc40.s390x.rpm 61 MB/s | 781 kB 00:00 (62/153): libarchive-3.7.2-3.fc41.s390x.rpm 44 MB/s | 440 kB 00:00 (63/153): libblkid-2.40-13.fc41.s390x.rpm 23 MB/s | 130 kB 00:00 (64/153): libattr-2.5.2-3.fc40.s390x.rpm 2.0 MB/s | 18 kB 00:00 (65/153): libcap-2.69-8.fc41.s390x.rpm 11 MB/s | 88 kB 00:00 (66/153): libbrotli-1.1.0-3.fc40.s390x.rpm 40 MB/s | 387 kB 00:00 (67/153): libcom_err-1.47.0-5.fc40.s390x.rpm 5.5 MB/s | 25 kB 00:00 (68/153): libcap-ng-0.8.5-1.fc41.s390x.rpm 5.6 MB/s | 33 kB 00:00 (69/153): libeconf-0.6.2-1.fc41.s390x.rpm 11 MB/s | 34 kB 00:00 (70/153): libcurl-8.7.1-1.fc41.s390x.rpm 37 MB/s | 371 kB 00:00 (71/153): libevent-2.1.12-12.fc40.s390x.rpm 27 MB/s | 260 kB 00:00 (72/153): libfdisk-2.40-13.fc41.s390x.rpm 27 MB/s | 165 kB 00:00 (73/153): libffi-3.4.6-1.fc41.s390x.rpm 5.7 MB/s | 36 kB 00:00 (74/153): libgomp-14.0.1-0.15.fc41.s390x.rpm 54 MB/s | 349 kB 00:00 (75/153): libgcc-14.0.1-0.15.fc41.s390x.rpm 8.1 MB/s | 83 kB 00:00 (76/153): libmount-2.40-13.fc41.s390x.rpm 42 MB/s | 159 kB 00:00 (77/153): libidn2-2.3.7-1.fc40.s390x.rpm 15 MB/s | 113 kB 00:00 (78/153): libnghttp2-1.61.0-1.fc41.s390x.rpm 12 MB/s | 80 kB 00:00 (79/153): libpkgconf-2.1.0-1.fc40.s390x.rpm 5.6 MB/s | 39 kB 00:00 (80/153): libnsl2-2.0.1-1.fc40.s390x.rpm 2.7 MB/s | 29 kB 00:00 (81/153): libpwquality-1.4.5-9.fc40.s390x.rpm 24 MB/s | 109 kB 00:00 (82/153): libpsl-0.21.5-3.fc40.s390x.rpm 12 MB/s | 64 kB 00:00 (83/153): libselinux-3.6-4.fc40.s390x.rpm 21 MB/s | 92 kB 00:00 (84/153): libsemanage-3.6-3.fc40.s390x.rpm 26 MB/s | 120 kB 00:00 (85/153): libsmartcols-2.40-13.fc41.s390x.rpm 17 MB/s | 86 kB 00:00 (86/153): libsepol-3.6-3.fc40.s390x.rpm 47 MB/s | 349 kB 00:00 (87/153): libssh-config-0.10.6-6.fc41.noarch.rp 3.1 MB/s | 9.1 kB 00:00 (88/153): libssh-0.10.6-6.fc41.s390x.rpm 31 MB/s | 211 kB 00:00 (89/153): libtasn1-4.19.0-6.fc40.s390x.rpm 12 MB/s | 78 kB 00:00 (90/153): libstdc++-14.0.1-0.15.fc41.s390x.rpm 73 MB/s | 983 kB 00:00 (91/153): 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rust-srpm-macros-26.2-1.fc41.noarch. 2.6 MB/s | 13 kB 00:00 (136/153): setup-2.14.5-2.fc40.noarch.rpm 34 MB/s | 148 kB 00:00 (137/153): sed-4.9-1.fc40.s390x.rpm 34 MB/s | 312 kB 00:00 (138/153): shadow-utils-4.15.1-2.fc41.s390x.rpm 69 MB/s | 1.3 MB 00:00 (139/153): sqlite-libs-3.45.2-1.fc41.s390x.rpm 51 MB/s | 762 kB 00:00 (140/153): systemd-libs-255.5-1.fc41.s390x.rpm 80 MB/s | 720 kB 00:00 (141/153): tar-1.35-3.fc40.s390x.rpm 87 MB/s | 871 kB 00:00 (142/153): unzip-6.0-63.fc40.s390x.rpm 21 MB/s | 195 kB 00:00 (143/153): util-linux-2.40-13.fc41.s390x.rpm 89 MB/s | 1.1 MB 00:00 (144/153): util-linux-core-2.40-13.fc41.s390x.r 69 MB/s | 526 kB 00:00 (145/153): which-2.21-41.fc40.s390x.rpm 5.9 MB/s | 43 kB 00:00 (146/153): xxhash-libs-0.8.2-2.fc40.s390x.rpm 7.5 MB/s | 36 kB 00:00 (147/153): xz-libs-5.4.6-3.fc41.s390x.rpm 26 MB/s | 116 kB 00:00 (148/153): xz-5.4.6-3.fc41.s390x.rpm 54 MB/s | 533 kB 00:00 (149/153): zig-srpm-macros-1-2.fc40.noarch.rpm 1.7 MB/s | 8.0 kB 00:00 (150/153): zlib-ng-compat-2.1.6-2.fc40.s390x.rp 19 MB/s | 66 kB 00:00 (151/153): zip-3.0-40.fc40.s390x.rpm 40 MB/s | 283 kB 00:00 (152/153): zstd-1.5.6-1.fc41.s390x.rpm 63 MB/s | 516 kB 00:00 (153/153): gdb-minimal-14.2-5.fc41.s390x.rpm 868 kB/s | 4.3 MB 00:05 -------------------------------------------------------------------------------- Total 10 MB/s | 53 MB 00:05 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-9.fc41.s390x 1/1 Preparing : 1/1 Installing : libgcc-14.0.1-0.15.fc41.s390x 1/153 Running scriptlet: libgcc-14.0.1-0.15.fc41.s390x 1/153 Installing : crypto-policies-20240320-1.git58e3d95.fc41.noarc 2/153 Running scriptlet: crypto-policies-20240320-1.git58e3d95.fc41.noarc 2/153 Installing : fedora-release-identity-basic-41-0.9.noarch 3/153 Installing : fedora-repos-rawhide-41-0.1.noarch 4/153 Installing : fedora-gpg-keys-41-0.1.noarch 5/153 Installing : fedora-repos-41-0.1.noarch 6/153 Installing : fedora-release-common-41-0.9.noarch 7/153 Installing : fedora-release-41-0.9.noarch 8/153 Installing : setup-2.14.5-2.fc40.noarch 9/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-2.fc40.noarch 9/153 Installing : filesystem-3.18-9.fc41.s390x 10/153 Installing : basesystem-11-20.fc40.noarch 11/153 Installing : rust-srpm-macros-26.2-1.fc41.noarch 12/153 Installing : qt6-srpm-macros-6.7.0-1.fc41.noarch 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Installing : patch-2.7.6-24.fc40.s390x 88/153 Installing : elfutils-default-yama-scope-0.191-7.fc41.noarch 89/153 Running scriptlet: elfutils-default-yama-scope-0.191-7.fc41.noarch 89/153 Installing : cpio-2.15-1.fc40.s390x 90/153 Installing : diffutils-3.10-5.fc40.s390x 91/153 Installing : keyutils-libs-1.6.3-3.fc40.s390x 92/153 Installing : libbrotli-1.1.0-3.fc40.s390x 93/153 Installing : libffi-3.4.6-1.fc41.s390x 94/153 Installing : p11-kit-0.25.3-4.fc40.s390x 95/153 Installing : p11-kit-trust-0.25.3-4.fc40.s390x 96/153 Running scriptlet: p11-kit-trust-0.25.3-4.fc40.s390x 96/153 Installing : libgomp-14.0.1-0.15.fc41.s390x 97/153 Installing : libnghttp2-1.61.0-1.fc41.s390x 98/153 Installing : libpkgconf-2.1.0-1.fc40.s390x 99/153 Installing : pkgconf-2.1.0-1.fc40.s390x 100/153 Installing : pkgconf-pkg-config-2.1.0-1.fc40.s390x 101/153 Installing : libtool-ltdl-2.4.7-10.fc40.s390x 102/153 Installing : libverto-0.3.2-8.fc40.s390x 103/153 Installing : xxhash-libs-0.8.2-2.fc40.s390x 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rpm-libs-4.19.1.1-1.fc40.s390x 137/153 Running scriptlet: rpm-4.19.1.1-1.fc40.s390x 138/153 Installing : rpm-4.19.1.1-1.fc40.s390x 138/153 Installing : efi-srpm-macros-5-11.fc40.noarch 139/153 Installing : lua-srpm-macros-1-13.fc40.noarch 140/153 Installing : zig-srpm-macros-1-2.fc40.noarch 141/153 Installing : rpm-build-libs-4.19.1.1-1.fc40.s390x 142/153 Installing : ansible-srpm-macros-1-15.fc41.noarch 143/153 Installing : fonts-srpm-macros-1:2.0.5-14.fc40.noarch 144/153 Installing : forge-srpm-macros-0.3.1-1.fc41.noarch 145/153 Installing : go-srpm-macros-3.6.0-1.fc41.noarch 146/153 Installing : python-srpm-macros-3.12-9.fc41.noarch 147/153 Installing : redhat-rpm-config-288-1.fc41.noarch 148/153 Installing : rpm-build-4.19.1.1-1.fc40.s390x 149/153 Installing : pyproject-srpm-macros-1.12.0-1.fc40.noarch 150/153 Installing : util-linux-2.40-13.fc41.s390x 151/153 Running scriptlet: util-linux-2.40-13.fc41.s390x 151/153 Installing : which-2.21-41.fc40.s390x 152/153 Installing : info-7.1-2.fc40.s390x 153/153 Running scriptlet: filesystem-3.18-9.fc41.s390x 153/153 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.5.0-5.fc41.s390x 153/153 Running scriptlet: rpm-4.19.1.1-1.fc40.s390x 153/153 Running scriptlet: info-7.1-2.fc40.s390x 153/153 Installed: alternatives-1.26-3.fc40.s390x ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.s390x authselect-1.5.0-5.fc41.s390x authselect-libs-1.5.0-5.fc41.s390x basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.s390x binutils-2.42.50-6.fc41.s390x binutils-gold-2.42.50-6.fc41.s390x bzip2-1.0.8-18.fc40.s390x bzip2-libs-1.0.8-18.fc40.s390x ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.s390x coreutils-common-9.5-1.fc41.s390x cpio-2.15-1.fc40.s390x cracklib-2.9.11-5.fc40.s390x crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.s390x cyrus-sasl-lib-2.1.28-19.fc40.s390x debugedit-5.0-14.fc40.s390x diffutils-3.10-5.fc40.s390x dwz-0.15-6.fc40.s390x ed-1.20.2-1.fc41.s390x efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.s390x elfutils-debuginfod-client-0.191-7.fc41.s390x elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.s390x elfutils-libs-0.191-7.fc41.s390x fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.s390x file-libs-5.45-5.fc41.s390x filesystem-3.18-9.fc41.s390x findutils-1:4.9.0-8.fc40.s390x fonts-srpm-macros-1:2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.s390x gdb-minimal-14.2-5.fc41.s390x gdbm-1:1.23-6.fc40.s390x gdbm-libs-1:1.23-6.fc40.s390x ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-16.fc41.s390x glibc-common-2.39.9000-16.fc41.s390x glibc-gconv-extra-2.39.9000-16.fc41.s390x glibc-minimal-langpack-2.39.9000-16.fc41.s390x gmp-1:6.3.0-1.fc41.s390x gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.s390x gzip-1.13-1.fc40.s390x info-7.1-2.fc40.s390x jansson-2.13.1-9.fc40.s390x kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.s390x krb5-libs-1.21.2-5.fc40.s390x libacl-2.3.2-1.fc40.s390x libarchive-3.7.2-3.fc41.s390x libattr-2.5.2-3.fc40.s390x libblkid-2.40-13.fc41.s390x libbrotli-1.1.0-3.fc40.s390x libcap-2.69-8.fc41.s390x libcap-ng-0.8.5-1.fc41.s390x libcom_err-1.47.0-5.fc40.s390x libcurl-8.7.1-1.fc41.s390x libeconf-0.6.2-1.fc41.s390x libevent-2.1.12-12.fc40.s390x libfdisk-2.40-13.fc41.s390x libffi-3.4.6-1.fc41.s390x libgcc-14.0.1-0.15.fc41.s390x libgomp-14.0.1-0.15.fc41.s390x libidn2-2.3.7-1.fc40.s390x libmount-2.40-13.fc41.s390x libnghttp2-1.61.0-1.fc41.s390x libnsl2-2.0.1-1.fc40.s390x libpkgconf-2.1.0-1.fc40.s390x libpsl-0.21.5-3.fc40.s390x libpwquality-1.4.5-9.fc40.s390x libselinux-3.6-4.fc40.s390x libsemanage-3.6-3.fc40.s390x libsepol-3.6-3.fc40.s390x libsmartcols-2.40-13.fc41.s390x libssh-0.10.6-6.fc41.s390x libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.s390x libtasn1-4.19.0-6.fc40.s390x libtirpc-1.3.4-1.rc3.fc41.s390x libtool-ltdl-2.4.7-10.fc40.s390x libunistring-1.1-7.fc41.s390x libutempter-1.2.1-13.fc40.s390x libuuid-2.40-13.fc41.s390x libverto-0.3.2-8.fc40.s390x libxcrypt-4.4.36-5.fc40.s390x libxml2-2.12.6-1.fc41.s390x libzstd-1.5.6-1.fc41.s390x lua-libs-5.4.6-5.fc40.s390x lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.s390x mpfr-4.2.1-3.fc40.s390x ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.s390x ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.s390x openssl-libs-1:3.2.1-6.fc41.s390x p11-kit-0.25.3-4.fc40.s390x p11-kit-trust-0.25.3-4.fc40.s390x package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.s390x pam-libs-1.6.1-1.fc41.s390x patch-2.7.6-24.fc40.s390x pcre2-10.43-1.fc41.s390x pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.s390x pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.s390x popt-1.19-6.fc40.s390x publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.s390x redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.s390x rpm-build-4.19.1.1-1.fc40.s390x rpm-build-libs-4.19.1.1-1.fc40.s390x rpm-libs-4.19.1.1-1.fc40.s390x rpm-sequoia-1.6.0-2.fc40.s390x rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.s390x setup-2.14.5-2.fc40.noarch shadow-utils-2:4.15.1-2.fc41.s390x sqlite-libs-3.45.2-1.fc41.s390x systemd-libs-255.5-1.fc41.s390x tar-2:1.35-3.fc40.s390x unzip-6.0-63.fc40.s390x util-linux-2.40-13.fc41.s390x util-linux-core-2.40-13.fc41.s390x which-2.21-41.fc40.s390x xxhash-libs-0.8.2-2.fc40.s390x xz-1:5.4.6-3.fc41.s390x xz-libs-1:5.4.6-3.fc41.s390x zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.s390x zlib-ng-compat-2.1.6-2.fc40.s390x zstd-1.5.6-1.fc41.s390x Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.s390x ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.s390x authselect-1.5.0-5.fc41.s390x authselect-libs-1.5.0-5.fc41.s390x basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.s390x binutils-2.42.50-6.fc41.s390x binutils-gold-2.42.50-6.fc41.s390x bzip2-1.0.8-18.fc40.s390x bzip2-libs-1.0.8-18.fc40.s390x ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.s390x coreutils-common-9.5-1.fc41.s390x cpio-2.15-1.fc40.s390x cracklib-2.9.11-5.fc40.s390x crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.s390x cyrus-sasl-lib-2.1.28-19.fc40.s390x debugedit-5.0-14.fc40.s390x diffutils-3.10-5.fc40.s390x dwz-0.15-6.fc40.s390x ed-1.20.2-1.fc41.s390x efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.s390x elfutils-debuginfod-client-0.191-7.fc41.s390x elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.s390x elfutils-libs-0.191-7.fc41.s390x fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.s390x file-libs-5.45-5.fc41.s390x filesystem-3.18-9.fc41.s390x findutils-4.9.0-8.fc40.s390x fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.s390x gdb-minimal-14.2-5.fc41.s390x gdbm-1.23-6.fc40.s390x gdbm-libs-1.23-6.fc40.s390x ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-16.fc41.s390x glibc-common-2.39.9000-16.fc41.s390x glibc-gconv-extra-2.39.9000-16.fc41.s390x glibc-minimal-langpack-2.39.9000-16.fc41.s390x gmp-6.3.0-1.fc41.s390x gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.s390x gzip-1.13-1.fc40.s390x info-7.1-2.fc40.s390x jansson-2.13.1-9.fc40.s390x kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.s390x krb5-libs-1.21.2-5.fc40.s390x libacl-2.3.2-1.fc40.s390x libarchive-3.7.2-3.fc41.s390x libattr-2.5.2-3.fc40.s390x libblkid-2.40-13.fc41.s390x libbrotli-1.1.0-3.fc40.s390x libcap-2.69-8.fc41.s390x libcap-ng-0.8.5-1.fc41.s390x libcom_err-1.47.0-5.fc40.s390x libcurl-8.7.1-1.fc41.s390x libeconf-0.6.2-1.fc41.s390x libevent-2.1.12-12.fc40.s390x libfdisk-2.40-13.fc41.s390x libffi-3.4.6-1.fc41.s390x libgcc-14.0.1-0.15.fc41.s390x libgomp-14.0.1-0.15.fc41.s390x libidn2-2.3.7-1.fc40.s390x libmount-2.40-13.fc41.s390x libnghttp2-1.61.0-1.fc41.s390x libnsl2-2.0.1-1.fc40.s390x libpkgconf-2.1.0-1.fc40.s390x libpsl-0.21.5-3.fc40.s390x libpwquality-1.4.5-9.fc40.s390x libselinux-3.6-4.fc40.s390x libsemanage-3.6-3.fc40.s390x libsepol-3.6-3.fc40.s390x libsmartcols-2.40-13.fc41.s390x libssh-0.10.6-6.fc41.s390x libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.s390x libtasn1-4.19.0-6.fc40.s390x libtirpc-1.3.4-1.rc3.fc41.s390x libtool-ltdl-2.4.7-10.fc40.s390x libunistring-1.1-7.fc41.s390x libutempter-1.2.1-13.fc40.s390x libuuid-2.40-13.fc41.s390x libverto-0.3.2-8.fc40.s390x libxcrypt-4.4.36-5.fc40.s390x libxml2-2.12.6-1.fc41.s390x libzstd-1.5.6-1.fc41.s390x lua-libs-5.4.6-5.fc40.s390x lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.s390x mpfr-4.2.1-3.fc40.s390x ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.s390x ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.s390x openssl-libs-3.2.1-6.fc41.s390x p11-kit-0.25.3-4.fc40.s390x p11-kit-trust-0.25.3-4.fc40.s390x package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.s390x pam-libs-1.6.1-1.fc41.s390x patch-2.7.6-24.fc40.s390x pcre2-10.43-1.fc41.s390x pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.s390x pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.s390x popt-1.19-6.fc40.s390x publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.s390x redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.s390x rpm-build-4.19.1.1-1.fc40.s390x rpm-build-libs-4.19.1.1-1.fc40.s390x rpm-libs-4.19.1.1-1.fc40.s390x rpm-sequoia-1.6.0-2.fc40.s390x rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.s390x setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.s390x sqlite-libs-3.45.2-1.fc41.s390x systemd-libs-255.5-1.fc41.s390x tar-1.35-3.fc40.s390x unzip-6.0-63.fc40.s390x util-linux-2.40-13.fc41.s390x util-linux-core-2.40-13.fc41.s390x which-2.21-41.fc40.s390x xxhash-libs-0.8.2-2.fc40.s390x xz-5.4.6-3.fc41.s390x xz-libs-5.4.6-3.fc41.s390x zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.s390x zlib-ng-compat-2.1.6-2.fc40.s390x zstd-1.5.6-1.fc41.s390x Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1714003200 Wrote: /builddir/build/SRPMS/R-Rhtslib-1.28.0-7.fc41.src.rpm RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-s390x-1714243800.246621/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-s390x-1714243800.246621/root/var/log/dnf.log /var/lib/mock/fedora-39-s390x-1714243800.246621/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-s390x-1714243800.246621/root/var/log/dnf.rpm.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-snm_p27_/R-Rhtslib/R-Rhtslib.spec) Config(child) 3 minutes 49 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Rhtslib-1.28.0-7.fc41.src.rpm) Config(fedora-39-s390x) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1714243800.246621/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1714243800.246621/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-1714243800.246621/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.s390x rpm-sequoia-1.6.0-1.fc39.s390x python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Finish: chroot init Start: build phase for R-Rhtslib-1.28.0-7.fc41.src.rpm Start: build setup for R-Rhtslib-1.28.0-7.fc41.src.rpm warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1714003200 Wrote: /builddir/build/SRPMS/R-Rhtslib-1.28.0-7.fc41.src.rpm RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 60 kB/s | 1.5 kB 00:00 Copr repository 3.0 MB/s | 16 MB 00:05 Additional repo http_kojipkgs_fedoraproject_org 100 kB/s | 3.8 kB 00:00 fedora 730 B/s | 3.8 kB 00:05 updates 20 kB/s | 4.8 kB 00:00 Dependencies resolved. ============================================================================================================================================ Package Arch Version Repository Size ============================================================================================================================================ Installing: R-devel s390x 4.4.0-1.fc41~bootstrap copr_base 11 k bzip2-devel s390x 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 213 k libcurl-devel s390x 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 756 k xz-devel s390x 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62 k zlib-ng-compat-devel s390x 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k Installing dependencies: R-core s390x 4.4.0-1.fc41~bootstrap copr_base 63 M R-core-devel s390x 4.4.0-1.fc41~bootstrap copr_base 88 k R-java s390x 4.4.0-1.fc41~bootstrap copr_base 11 k R-java-devel s390x 4.4.0-1.fc41~bootstrap copr_base 11 k R-rpm-macros noarch 1.2.1-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k abattis-cantarell-vf-fonts noarch 0.301-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120 k alsa-lib s390x 1.2.11-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 525 k annobin-docs noarch 12.52-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 90 k annobin-plugin-gcc s390x 12.52-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 962 k avahi-libs s390x 0.8-26.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67 k brotli s390x 1.1.0-3.fc40 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tzdata-java noarch 2024a-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 47 k xdg-utils noarch 1.2.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79 k xml-common noarch 0.6.3-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31 k xorg-x11-fonts-Type1 noarch 7.5-38.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 499 k xorg-x11-proto-devel noarch 2024.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266 k Transaction Summary ============================================================================================================================================ Install 160 Packages Total download size: 261 M Installed size: 806 M Downloading Packages: (1/160): R-devel-4.4.0-1.fc41~bootstrap.s390x.r 426 kB/s | 11 kB 00:00 (2/160): R-core-devel-4.4.0-1.fc41~bootstrap.s3 3.4 MB/s | 88 kB 00:00 (3/160): R-java-4.4.0-1.fc41~bootstrap.s390x.rp 1.2 MB/s | 11 kB 00:00 (4/160): R-java-devel-4.4.0-1.fc41~bootstrap.s3 808 kB/s | 11 kB 00:00 (5/160): graphite2-1.3.14-15.fc40.s390x.rpm 9.4 MB/s | 101 kB 00:00 (6/160): graphite2-devel-1.3.14-15.fc40.s390x.r 2.1 MB/s | 21 kB 00:00 (7/160): libRmath-4.4.0-1.fc41~bootstrap.s390x. 8.5 MB/s | 110 kB 00:00 (8/160): libRmath-devel-4.4.0-1.fc41~bootstrap. 1.4 MB/s | 16 kB 00:00 (9/160): abattis-cantarell-vf-fonts-0.301-12.fc 6.2 MB/s | 120 kB 00:00 (10/160): R-rpm-macros-1.2.1-9.fc40.noarch.rpm 2.2 kB/s | 11 kB 00:05 (11/160): annobin-docs-12.52-1.fc41.noarch.rpm 11 MB/s | 90 kB 00:00 (12/160): alsa-lib-1.2.11-2.fc40.s390x.rpm 104 kB/s | 525 kB 00:05 (13/160): annobin-plugin-gcc-12.52-1.fc41.s390x 41 MB/s | 962 kB 00:00 (14/160): brotli-1.1.0-3.fc40.s390x.rpm 3.4 MB/s | 20 kB 00:00 (15/160): avahi-libs-0.8-26.fc40.s390x.rpm 5.1 MB/s | 67 kB 00:00 (16/160): brotli-devel-1.1.0-3.fc40.s390x.rpm 4.2 MB/s | 34 kB 00:00 (17/160): bzip2-devel-1.0.8-18.fc40.s390x.rpm 26 MB/s | 213 kB 00:00 (18/160): cairo-devel-1.18.0-3.fc40.s390x.rpm 21 MB/s | 176 kB 00:00 (19/160): cmake-filesystem-3.28.3-4.fc41.s390x. 3.5 MB/s | 18 kB 00:00 (20/160): copy-jdk-configs-4.1-5.fc40.noarch.rp 7.4 MB/s | 28 kB 00:00 (21/160): cairo-1.18.0-3.fc40.s390x.rpm 23 MB/s | 729 kB 00:00 (22/160): crypto-policies-scripts-20240320-1.gi 11 MB/s | 108 kB 00:00 (23/160): cups-libs-2.4.7-13.fc41.s390x.rpm 21 MB/s | 278 kB 00:00 (24/160): dbus-libs-1.14.10-3.fc40.s390x.rpm 19 MB/s | 159 kB 00:00 (25/160): R-core-4.4.0-1.fc41~bootstrap.s390x.r 12 MB/s | 63 MB 00:05 (26/160): default-fonts-core-sans-4.0-13.fc41.n 462 kB/s | 25 kB 00:00 (27/160): emacs-filesystem-30.0-2.fc41.noarch.r 1.6 MB/s | 7.1 kB 00:00 (28/160): expat-2.6.2-1.fc41.s390x.rpm 15 MB/s | 117 kB 00:00 (29/160): flexiblas-3.4.2-1.fc41.s390x.rpm 6.3 MB/s | 25 kB 00:00 (30/160): desktop-file-utils-0.26-12.fc40.s390x 3.5 MB/s | 72 kB 00:00 (31/160): flexiblas-devel-3.4.2-1.fc41.s390x.rp 20 MB/s | 112 kB 00:00 (32/160): flexiblas-netlib-3.4.2-1.fc41.s390x.r 65 MB/s | 3.7 MB 00:00 (33/160): flexiblas-openblas-openmp-3.4.2-1.fc4 4.7 MB/s | 18 kB 00:00 (34/160): flexiblas-openblas-openmp64-3.4.2-1.f 4.9 MB/s | 18 kB 00:00 (35/160): cpp-14.0.1-0.15.fc41.s390x.rpm 51 MB/s | 9.6 MB 00:00 (36/160): fontconfig-devel-2.15.0-4.fc40.s390x. 24 MB/s | 128 kB 00:00 (37/160): fontconfig-2.15.0-4.fc40.s390x.rpm 19 MB/s | 265 kB 00:00 (38/160): fonts-filesystem-2.0.5-14.fc40.noarch 1.8 MB/s | 8.2 kB 00:00 (39/160): freetype-2.13.2-5.fc40.s390x.rpm 53 MB/s | 445 kB 00:00 (40/160): fribidi-1.0.13-4.fc40.s390x.rpm 24 MB/s | 94 kB 00:00 (41/160): gc-8.2.2-6.fc40.s390x.rpm 23 MB/s | 114 kB 00:00 (42/160): freetype-devel-2.13.2-5.fc40.s390x.rp 57 MB/s | 913 kB 00:00 (43/160): flexiblas-netlib64-3.4.2-1.fc41.s390x 35 MB/s | 3.6 MB 00:00 (44/160): gcc-gfortran-14.0.1-0.15.fc41.s390x.r 103 MB/s | 11 MB 00:00 (45/160): gcc-plugin-annobin-14.0.1-0.15.fc41.s 8.1 MB/s | 47 kB 00:00 (46/160): gettext-0.22.5-2.fc41.s390x.rpm 83 MB/s | 1.1 MB 00:00 (47/160): gettext-envsubst-0.22.5-2.fc41.s390x. 7.2 MB/s | 39 kB 00:00 (48/160): gettext-libs-0.22.5-2.fc41.s390x.rpm 61 MB/s | 688 kB 00:00 (49/160): gettext-runtime-0.22.5-2.fc41.s390x.r 19 MB/s | 114 kB 00:00 (50/160): gcc-c++-14.0.1-0.15.fc41.s390x.rpm 71 MB/s | 12 MB 00:00 (51/160): glib2-devel-2.80.0-1.fc41.s390x.rpm 80 MB/s | 1.4 MB 00:00 (52/160): glibc-devel-2.39.9000-16.fc41.s390x.r 21 MB/s | 129 kB 00:00 (53/160): glibc-headers-s390-2.39.9000-16.fc41. 52 MB/s | 532 kB 00:00 (54/160): glib2-2.80.0-1.fc41.s390x.rpm 62 MB/s | 3.0 MB 00:00 (55/160): google-noto-fonts-common-20240401-1.f 4.2 MB/s | 17 kB 00:00 (56/160): gnutls-3.8.5-1.fc41.s390x.rpm 81 MB/s | 1.1 MB 00:00 (57/160): google-noto-sans-vf-fonts-20240401-1. 63 MB/s | 594 kB 00:00 (58/160): harfbuzz-8.4.0-1.fc41.s390x.rpm 50 MB/s | 1.1 MB 00:00 (59/160): harfbuzz-devel-8.4.0-1.fc41.s390x.rpm 50 MB/s | 414 kB 00:00 (60/160): harfbuzz-icu-8.4.0-1.fc41.s390x.rpm 3.6 MB/s | 16 kB 00:00 (61/160): java-21-openjdk-21.0.2.0.13-3.fc41.s3 35 MB/s | 374 kB 00:00 (62/160): guile30-3.0.7-12.fc40.s390x.rpm 112 MB/s | 8.1 MB 00:00 (63/160): java-21-openjdk-devel-21.0.2.0.13-3.f 80 MB/s | 5.0 MB 00:00 (64/160): javapackages-filesystem-6.2.0-9.fc41. 2.0 MB/s | 12 kB 00:00 (65/160): jbigkit-libs-2.1-29.fc40.s390x.rpm 7.3 MB/s | 56 kB 00:00 (66/160): kernel-headers-6.9.0-0.rc5.44.fc41.s3 70 MB/s | 1.4 MB 00:00 (67/160): libICE-1.1.1-3.fc40.s390x.rpm 13 MB/s | 77 kB 00:00 (68/160): libSM-1.2.4-3.fc40.s390x.rpm 10 MB/s | 45 kB 00:00 (69/160): libX11-1.8.9-1.fc41.s390x.rpm 69 MB/s | 672 kB 00:00 (70/160): libX11-common-1.8.9-1.fc41.noarch.rpm 17 MB/s | 145 kB 00:00 (71/160): libX11-devel-1.8.9-1.fc41.s390x.rpm 49 MB/s | 911 kB 00:00 (72/160): gcc-14.0.1-0.15.fc41.s390x.rpm 69 MB/s | 31 MB 00:00 (73/160): libX11-xcb-1.8.9-1.fc41.s390x.rpm 393 kB/s | 12 kB 00:00 (74/160): libXau-devel-1.0.11-6.fc40.s390x.rpm 3.7 MB/s | 14 kB 00:00 (75/160): libXau-1.0.11-6.fc40.s390x.rpm 6.7 MB/s | 32 kB 00:00 (76/160): libXext-1.3.6-1.fc40.s390x.rpm 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java-21-openjdk-headless-21.0.2.0.13 117 MB/s | 45 MB 00:00 (107/160): libicu-74.2-1.fc40.s390x.rpm 61 MB/s | 10 MB 00:00 (108/160): libtextstyle-0.22.5-2.fc41.s390x.rpm 1.9 MB/s | 92 kB 00:00 (109/160): libtiff-4.6.0-2.fc40.s390x.rpm 63 MB/s | 372 kB 00:00 (110/160): libthai-0.1.29-8.fc40.s390x.rpm 33 MB/s | 215 kB 00:00 (111/160): libtirpc-devel-1.3.4-1.rc3.fc41.s390 20 MB/s | 112 kB 00:00 (112/160): libwebp-1.4.0-1.fc41.s390x.rpm 46 MB/s | 262 kB 00:00 (113/160): libubsan-14.0.1-0.15.fc41.s390x.rpm 34 MB/s | 226 kB 00:00 (114/160): libxcb-1.17.0-1.fc41.s390x.rpm 46 MB/s | 245 kB 00:00 (115/160): libxcrypt-devel-4.4.36-5.fc40.s390x. 6.9 MB/s | 29 kB 00:00 (116/160): libxml2-devel-2.12.6-1.fc41.s390x.rp 60 MB/s | 495 kB 00:00 (117/160): lksctp-tools-1.0.19-6.fc40.s390x.rpm 16 MB/s | 93 kB 00:00 (118/160): libxcb-devel-1.17.0-1.fc41.s390x.rpm 93 MB/s | 1.1 MB 00:00 (119/160): lua-posix-36.2.1-6.fc40.s390x.rpm 25 MB/s | 135 kB 00:00 (120/160): lua-5.4.6-5.fc40.s390x.rpm 34 MB/s | 199 kB 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tre-devel-0.8.0-43.20140228gitc2f5d1 3.6 MB/s | 12 kB 00:00 (151/160): ttmkfdir-3.0.9-70.fc40.s390x.rpm 12 MB/s | 56 kB 00:00 (152/160): tzdata-2024a-5.fc41.noarch.rpm 63 MB/s | 431 kB 00:00 (153/160): tzdata-java-2024a-5.fc41.noarch.rpm 11 MB/s | 47 kB 00:00 (154/160): xdg-utils-1.2.1-1.fc41.noarch.rpm 16 MB/s | 79 kB 00:00 (155/160): xml-common-0.6.3-63.fc40.noarch.rpm 4.6 MB/s | 31 kB 00:00 (156/160): xorg-x11-fonts-Type1-7.5-38.fc40.noa 61 MB/s | 499 kB 00:00 (157/160): xorg-x11-proto-devel-2024.1-1.fc41.n 33 MB/s | 266 kB 00:00 (158/160): xz-devel-5.4.6-3.fc41.s390x.rpm 12 MB/s | 62 kB 00:00 (159/160): zlib-ng-compat-devel-2.1.6-2.fc40.s3 7.9 MB/s | 36 kB 00:00 (160/160): python3-libs-3.12.3-2.fc41.s390x.rpm 100 MB/s | 8.8 MB 00:00 -------------------------------------------------------------------------------- Total 42 MB/s | 261 MB 00:06 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-5.fc40.noarch 1/1 Running scriptlet: crypto-policies-scripts-20240320-1.git58e3d95.fc41.n 1/1 Running scriptlet: java-21-openjdk-headless-1:21.0.2.0.13-3.fc41.s390x 1/1 Preparing : 1/1 Installing : zlib-ng-compat-devel-2.1.6-2.fc40.s390x 1/160 Installing : xorg-x11-proto-devel-2024.1-1.fc41.noarch 2/160 Installing : nspr-4.35.0-22.fc41.s390x 3/160 Installing : libgfortran-14.0.1-0.15.fc41.s390x 4/160 Installing : nss-util-3.99.0-1.fc41.s390x 5/160 Installing : libpng-2:1.6.40-3.fc40.s390x 6/160 Installing : libmpc-1.3.1-5.fc40.s390x 7/160 Installing : tcl-1:8.6.14-1.fc41.s390x 8/160 Installing : libicu-74.2-1.fc40.s390x 9/160 Installing : fonts-filesystem-1:2.0.5-14.fc40.noarch 10/160 Installing : libicu-devel-74.2-1.fc40.s390x 11/160 Installing : tcl-devel-1:8.6.14-1.fc41.s390x 12/160 Installing : libpng-devel-2:1.6.40-3.fc40.s390x 13/160 Installing : xz-devel-1:5.4.6-3.fc41.s390x 14/160 Installing : pixman-0.43.4-1.fc41.s390x 15/160 Installing : openblas-0.3.26-4.fc40.s390x 16/160 Installing : libtextstyle-0.22.5-2.fc41.s390x 17/160 Installing : gettext-libs-0.22.5-2.fc41.s390x 18/160 Installing : libjpeg-turbo-3.0.2-2.fc41.s390x 19/160 Installing : libXau-1.0.11-6.fc40.s390x 20/160 Installing : libxcb-1.17.0-1.fc41.s390x 21/160 Installing : libICE-1.1.1-3.fc40.s390x 22/160 Installing : bzip2-devel-1.0.8-18.fc40.s390x 23/160 Installing : libRmath-4.4.0-1.fc41~bootstrap.s390x 24/160 Installing : graphite2-1.3.14-15.fc40.s390x 25/160 Installing : graphite2-devel-1.3.14-15.fc40.s390x 26/160 Installing : libRmath-devel-4.4.0-1.fc41~bootstrap.s390x 27/160 Installing : libSM-1.2.4-3.fc40.s390x 28/160 Installing : libXau-devel-1.0.11-6.fc40.s390x 29/160 Installing : libxcb-devel-1.17.0-1.fc41.s390x 30/160 Installing : openblas-openmp-0.3.26-4.fc40.s390x 31/160 Installing : openblas-openmp64-0.3.26-4.fc40.s390x 32/160 Installing : flexiblas-netlib-3.4.2-1.fc41.s390x 33/160 Installing : flexiblas-openblas-openmp-3.4.2-1.fc41.s390x 34/160 Installing : flexiblas-netlib64-3.4.2-1.fc41.s390x 35/160 Installing : flexiblas-openblas-openmp64-3.4.2-1.fc41.s390x 36/160 Installing : flexiblas-3.4.2-1.fc41.s390x 37/160 Installing : flexiblas-devel-3.4.2-1.fc41.s390x 38/160 Installing : pixman-devel-0.43.4-1.fc41.s390x 39/160 Installing : abattis-cantarell-vf-fonts-0.301-12.fc40.noarch 40/160 Installing : cpp-14.0.1-0.15.fc41.s390x 41/160 Installing : nss-softokn-freebl-3.99.0-1.fc41.s390x 42/160 Installing : nss-softokn-3.99.0-1.fc41.s390x 43/160 Running scriptlet: xml-common-0.6.3-63.fc40.noarch 44/160 Installing : xml-common-0.6.3-63.fc40.noarch 44/160 Installing : tzdata-java-2024a-5.fc41.noarch 45/160 Installing : tzdata-2024a-5.fc41.noarch 46/160 Installing : tre-common-0.8.0-43.20140228gitc2f5d13.fc40.noar 47/160 Installing : tre-0.8.0-43.20140228gitc2f5d13.fc40.s390x 48/160 Installing : tre-devel-0.8.0-43.20140228gitc2f5d13.fc40.s390x 49/160 Installing : sysprof-capture-devel-46.0-1.fc41.s390x 50/160 Installing : python-pip-wheel-24.0-2.fc41.noarch 51/160 Installing : pcre2-utf32-10.43-1.fc41.s390x 52/160 Installing : pcre2-utf16-10.43-1.fc41.s390x 53/160 Installing : pcre2-devel-10.43-1.fc41.s390x 54/160 Installing : nettle-3.9.1-6.fc40.s390x 55/160 Installing : gnutls-3.8.5-1.fc41.s390x 56/160 Installing : glib2-2.80.0-1.fc41.s390x 57/160 Installing : mpdecimal-2.5.1-9.fc40.s390x 58/160 Installing : lua-posix-36.2.1-6.fc40.s390x 59/160 Installing : lua-5.4.6-5.fc40.s390x 60/160 Installing : copy-jdk-configs-4.1-5.fc40.noarch 61/160 Installing : lksctp-tools-1.0.19-6.fc40.s390x 62/160 Installing : libwebp-1.4.0-1.fc41.s390x 63/160 Installing : libubsan-14.0.1-0.15.fc41.s390x 64/160 Installing : libtirpc-devel-1.3.4-1.rc3.fc41.s390x 65/160 Installing : libstdc++-devel-14.0.1-0.15.fc41.s390x 66/160 Installing : libsepol-devel-3.6-3.fc40.s390x 67/160 Installing : libselinux-devel-3.6-4.fc40.s390x 68/160 Installing : liblerc-4.0.0-6.fc40.s390x 69/160 Installing : libfontenc-1.1.8-1.fc41.s390x 70/160 Installing : libffi-devel-3.4.6-1.fc41.s390x 71/160 Installing : libdatrie-0.2.13-9.fc40.s390x 72/160 Installing : libthai-0.1.29-8.fc40.s390x 73/160 Installing : libblkid-devel-2.40-13.fc41.s390x 74/160 Installing : libmount-devel-2.40-13.fc41.s390x 75/160 Installing : libb2-0.98.1-11.fc40.s390x 76/160 Installing : libatomic-14.0.1-0.15.fc41.s390x 77/160 Installing : libasan-14.0.1-0.15.fc41.s390x 78/160 Installing : libX11-xcb-1.8.9-1.fc41.s390x 79/160 Installing : libX11-common-1.8.9-1.fc41.noarch 80/160 Installing : libX11-1.8.9-1.fc41.s390x 81/160 Installing : libXext-1.3.6-1.fc40.s390x 82/160 Installing : libX11-devel-1.8.9-1.fc41.s390x 83/160 Installing : libXrender-0.9.11-6.fc40.s390x 84/160 Installing : libXrender-devel-0.9.11-6.fc40.s390x 85/160 Installing : libXi-1.8.1-5.fc40.s390x 86/160 Installing : libXt-1.3.0-3.fc40.s390x 87/160 Installing : libXmu-1.2.1-1.fc41.s390x 88/160 Installing : libXtst-1.2.4-6.fc40.s390x 89/160 Installing : libXext-devel-1.3.6-1.fc40.s390x 90/160 Installing : libXcomposite-0.4.6-3.fc40.s390x 91/160 Installing : kernel-headers-6.9.0-0.rc5.44.fc41.s390x 92/160 Installing : jbigkit-libs-2.1-29.fc40.s390x 93/160 Installing : libtiff-4.6.0-2.fc40.s390x 94/160 Installing : javapackages-filesystem-6.2.0-9.fc41.noarch 95/160 Installing : google-noto-fonts-common-20240401-1.fc41.noarch 96/160 Installing : google-noto-sans-vf-fonts-20240401-1.fc41.noarch 97/160 Installing : default-fonts-core-sans-4.0-13.fc41.noarch 98/160 Installing : cairo-1.18.0-3.fc40.s390x 99/160 Installing : harfbuzz-8.4.0-1.fc41.s390x 100/160 Installing : freetype-2.13.2-5.fc40.s390x 101/160 Installing : fontconfig-2.15.0-4.fc40.s390x 102/160 Running scriptlet: fontconfig-2.15.0-4.fc40.s390x 102/160 Installing : libXft-2.3.8-6.fc40.s390x 103/160 Running scriptlet: tk-1:8.6.14-1.fc41.s390x 104/160 Installing : tk-1:8.6.14-1.fc41.s390x 104/160 Installing : mkfontscale-1.2.2-6.fc40.s390x 105/160 Installing : ttmkfdir-3.0.9-70.fc40.s390x 106/160 Installing : xorg-x11-fonts-Type1-7.5-38.fc40.noarch 107/160 Running scriptlet: xorg-x11-fonts-Type1-7.5-38.fc40.noarch 107/160 Installing : harfbuzz-icu-8.4.0-1.fc41.s390x 108/160 Installing : glibc-headers-s390-2.39.9000-16.fc41.noarch 109/160 Installing : libxcrypt-devel-4.4.36-5.fc40.s390x 110/160 Installing : glibc-devel-2.39.9000-16.fc41.s390x 111/160 Installing : gettext-envsubst-0.22.5-2.fc41.s390x 112/160 Installing : gettext-runtime-0.22.5-2.fc41.s390x 113/160 Installing : gettext-0.22.5-2.fc41.s390x 114/160 Installing : gc-8.2.2-6.fc40.s390x 115/160 Installing : guile30-3.0.7-12.fc40.s390x 116/160 Installing : make-1:4.4.1-6.fc40.s390x 117/160 Installing : gcc-14.0.1-0.15.fc41.s390x 118/160 Running scriptlet: gcc-14.0.1-0.15.fc41.s390x 118/160 Installing : gcc-c++-14.0.1-0.15.fc41.s390x 119/160 Installing : gcc-gfortran-14.0.1-0.15.fc41.s390x 120/160 Installing : fribidi-1.0.13-4.fc40.s390x 121/160 Installing : pango-1.52.2-1.fc41.s390x 122/160 Installing : expat-2.6.2-1.fc41.s390x 123/160 Installing : python3-3.12.3-2.fc41.s390x 124/160 Installing : python3-libs-3.12.3-2.fc41.s390x 125/160 Installing : crypto-policies-scripts-20240320-1.git58e3d95.fc 126/160 Installing : nss-sysinit-3.99.0-1.fc41.s390x 127/160 Installing : nss-3.99.0-1.fc41.s390x 128/160 Running scriptlet: nss-3.99.0-1.fc41.s390x 128/160 Installing : python3-packaging-24.0-1.fc41.noarch 129/160 Installing : glib2-devel-2.80.0-1.fc41.s390x 130/160 Installing : emacs-filesystem-1:30.0-2.fc41.noarch 131/160 Installing : desktop-file-utils-0.26-12.fc40.s390x 132/160 Installing : xdg-utils-1.2.1-1.fc41.noarch 133/160 Installing : R-core-4.4.0-1.fc41~bootstrap.s390x 134/160 Installing : R-rpm-macros-1.2.1-9.fc40.noarch 135/160 Installing : dbus-libs-1:1.14.10-3.fc40.s390x 136/160 Installing : avahi-libs-0.8-26.fc40.s390x 137/160 Installing : cups-libs-1:2.4.7-13.fc41.s390x 138/160 Installing : cmake-filesystem-3.28.3-4.fc41.s390x 139/160 Installing : libxml2-devel-2.12.6-1.fc41.s390x 140/160 Installing : brotli-1.1.0-3.fc40.s390x 141/160 Installing : brotli-devel-1.1.0-3.fc40.s390x 142/160 Installing : cairo-devel-1.18.0-3.fc40.s390x 143/160 Installing : fontconfig-devel-2.15.0-4.fc40.s390x 144/160 Installing : freetype-devel-2.13.2-5.fc40.s390x 145/160 Installing : harfbuzz-devel-8.4.0-1.fc41.s390x 146/160 Installing : libXft-devel-2.3.8-6.fc40.s390x 147/160 Installing : tk-devel-1:8.6.14-1.fc41.s390x 148/160 Installing : R-core-devel-4.4.0-1.fc41~bootstrap.s390x 149/160 Installing : annobin-docs-12.52-1.fc41.noarch 150/160 Installing : alsa-lib-1.2.11-2.fc40.s390x 151/160 Installing : java-21-openjdk-headless-1:21.0.2.0.13-3.fc41.s3 152/160 Running scriptlet: java-21-openjdk-headless-1:21.0.2.0.13-3.fc41.s3 152/160 Installing : R-java-4.4.0-1.fc41~bootstrap.s390x 153/160 Installing : java-21-openjdk-1:21.0.2.0.13-3.fc41.s390x 154/160 Running scriptlet: java-21-openjdk-1:21.0.2.0.13-3.fc41.s390x 154/160 Installing : java-21-openjdk-devel-1:21.0.2.0.13-3.fc41.s390x 155/160 Running scriptlet: java-21-openjdk-devel-1:21.0.2.0.13-3.fc41.s390x 155/160 Installing : R-java-devel-4.4.0-1.fc41~bootstrap.s390x 156/160 Installing : R-devel-4.4.0-1.fc41~bootstrap.s390x 157/160 Installing : annobin-plugin-gcc-12.52-1.fc41.s390x 158/160 Running scriptlet: annobin-plugin-gcc-12.52-1.fc41.s390x 158/160 Installing : gcc-plugin-annobin-14.0.1-0.15.fc41.s390x 159/160 Running scriptlet: gcc-plugin-annobin-14.0.1-0.15.fc41.s390x 159/160 Installing : libcurl-devel-8.7.1-1.fc41.s390x 160/160 Running scriptlet: copy-jdk-configs-4.1-5.fc40.noarch 160/160 Running scriptlet: fontconfig-2.15.0-4.fc40.s390x 160/160 Running scriptlet: crypto-policies-scripts-20240320-1.git58e3d95.fc 160/160 Running scriptlet: nss-3.99.0-1.fc41.s390x 160/160 Running scriptlet: java-21-openjdk-headless-1:21.0.2.0.13-3.fc41.s3 160/160 Running scriptlet: java-21-openjdk-1:21.0.2.0.13-3.fc41.s390x 160/160 Running scriptlet: java-21-openjdk-devel-1:21.0.2.0.13-3.fc41.s390x 160/160 Running scriptlet: libcurl-devel-8.7.1-1.fc41.s390x 160/160 Installed: R-core-4.4.0-1.fc41~bootstrap.s390x R-core-devel-4.4.0-1.fc41~bootstrap.s390x R-devel-4.4.0-1.fc41~bootstrap.s390x R-java-4.4.0-1.fc41~bootstrap.s390x R-java-devel-4.4.0-1.fc41~bootstrap.s390x R-rpm-macros-1.2.1-9.fc40.noarch abattis-cantarell-vf-fonts-0.301-12.fc40.noarch alsa-lib-1.2.11-2.fc40.s390x annobin-docs-12.52-1.fc41.noarch annobin-plugin-gcc-12.52-1.fc41.s390x avahi-libs-0.8-26.fc40.s390x brotli-1.1.0-3.fc40.s390x brotli-devel-1.1.0-3.fc40.s390x bzip2-devel-1.0.8-18.fc40.s390x cairo-1.18.0-3.fc40.s390x cairo-devel-1.18.0-3.fc40.s390x cmake-filesystem-3.28.3-4.fc41.s390x copy-jdk-configs-4.1-5.fc40.noarch cpp-14.0.1-0.15.fc41.s390x crypto-policies-scripts-20240320-1.git58e3d95.fc41.noarch cups-libs-1:2.4.7-13.fc41.s390x dbus-libs-1:1.14.10-3.fc40.s390x default-fonts-core-sans-4.0-13.fc41.noarch desktop-file-utils-0.26-12.fc40.s390x emacs-filesystem-1:30.0-2.fc41.noarch expat-2.6.2-1.fc41.s390x flexiblas-3.4.2-1.fc41.s390x flexiblas-devel-3.4.2-1.fc41.s390x flexiblas-netlib-3.4.2-1.fc41.s390x flexiblas-netlib64-3.4.2-1.fc41.s390x flexiblas-openblas-openmp-3.4.2-1.fc41.s390x flexiblas-openblas-openmp64-3.4.2-1.fc41.s390x fontconfig-2.15.0-4.fc40.s390x fontconfig-devel-2.15.0-4.fc40.s390x fonts-filesystem-1:2.0.5-14.fc40.noarch freetype-2.13.2-5.fc40.s390x freetype-devel-2.13.2-5.fc40.s390x fribidi-1.0.13-4.fc40.s390x gc-8.2.2-6.fc40.s390x gcc-14.0.1-0.15.fc41.s390x gcc-c++-14.0.1-0.15.fc41.s390x gcc-gfortran-14.0.1-0.15.fc41.s390x gcc-plugin-annobin-14.0.1-0.15.fc41.s390x gettext-0.22.5-2.fc41.s390x gettext-envsubst-0.22.5-2.fc41.s390x gettext-libs-0.22.5-2.fc41.s390x gettext-runtime-0.22.5-2.fc41.s390x glib2-2.80.0-1.fc41.s390x glib2-devel-2.80.0-1.fc41.s390x glibc-devel-2.39.9000-16.fc41.s390x glibc-headers-s390-2.39.9000-16.fc41.noarch gnutls-3.8.5-1.fc41.s390x google-noto-fonts-common-20240401-1.fc41.noarch google-noto-sans-vf-fonts-20240401-1.fc41.noarch graphite2-1.3.14-15.fc40.s390x graphite2-devel-1.3.14-15.fc40.s390x guile30-3.0.7-12.fc40.s390x harfbuzz-8.4.0-1.fc41.s390x harfbuzz-devel-8.4.0-1.fc41.s390x harfbuzz-icu-8.4.0-1.fc41.s390x java-21-openjdk-1:21.0.2.0.13-3.fc41.s390x java-21-openjdk-devel-1:21.0.2.0.13-3.fc41.s390x java-21-openjdk-headless-1:21.0.2.0.13-3.fc41.s390x javapackages-filesystem-6.2.0-9.fc41.noarch jbigkit-libs-2.1-29.fc40.s390x kernel-headers-6.9.0-0.rc5.44.fc41.s390x libICE-1.1.1-3.fc40.s390x libRmath-4.4.0-1.fc41~bootstrap.s390x libRmath-devel-4.4.0-1.fc41~bootstrap.s390x libSM-1.2.4-3.fc40.s390x libX11-1.8.9-1.fc41.s390x libX11-common-1.8.9-1.fc41.noarch libX11-devel-1.8.9-1.fc41.s390x libX11-xcb-1.8.9-1.fc41.s390x libXau-1.0.11-6.fc40.s390x libXau-devel-1.0.11-6.fc40.s390x libXcomposite-0.4.6-3.fc40.s390x libXext-1.3.6-1.fc40.s390x libXext-devel-1.3.6-1.fc40.s390x libXft-2.3.8-6.fc40.s390x libXft-devel-2.3.8-6.fc40.s390x libXi-1.8.1-5.fc40.s390x libXmu-1.2.1-1.fc41.s390x libXrender-0.9.11-6.fc40.s390x libXrender-devel-0.9.11-6.fc40.s390x libXt-1.3.0-3.fc40.s390x libXtst-1.2.4-6.fc40.s390x libasan-14.0.1-0.15.fc41.s390x libatomic-14.0.1-0.15.fc41.s390x libb2-0.98.1-11.fc40.s390x libblkid-devel-2.40-13.fc41.s390x libcurl-devel-8.7.1-1.fc41.s390x libdatrie-0.2.13-9.fc40.s390x libffi-devel-3.4.6-1.fc41.s390x libfontenc-1.1.8-1.fc41.s390x libgfortran-14.0.1-0.15.fc41.s390x libicu-74.2-1.fc40.s390x libicu-devel-74.2-1.fc40.s390x libjpeg-turbo-3.0.2-2.fc41.s390x liblerc-4.0.0-6.fc40.s390x libmount-devel-2.40-13.fc41.s390x libmpc-1.3.1-5.fc40.s390x libpng-2:1.6.40-3.fc40.s390x libpng-devel-2:1.6.40-3.fc40.s390x libselinux-devel-3.6-4.fc40.s390x libsepol-devel-3.6-3.fc40.s390x libstdc++-devel-14.0.1-0.15.fc41.s390x libtextstyle-0.22.5-2.fc41.s390x libthai-0.1.29-8.fc40.s390x libtiff-4.6.0-2.fc40.s390x libtirpc-devel-1.3.4-1.rc3.fc41.s390x libubsan-14.0.1-0.15.fc41.s390x libwebp-1.4.0-1.fc41.s390x libxcb-1.17.0-1.fc41.s390x libxcb-devel-1.17.0-1.fc41.s390x libxcrypt-devel-4.4.36-5.fc40.s390x libxml2-devel-2.12.6-1.fc41.s390x lksctp-tools-1.0.19-6.fc40.s390x lua-5.4.6-5.fc40.s390x lua-posix-36.2.1-6.fc40.s390x make-1:4.4.1-6.fc40.s390x mkfontscale-1.2.2-6.fc40.s390x mpdecimal-2.5.1-9.fc40.s390x nettle-3.9.1-6.fc40.s390x nspr-4.35.0-22.fc41.s390x nss-3.99.0-1.fc41.s390x nss-softokn-3.99.0-1.fc41.s390x nss-softokn-freebl-3.99.0-1.fc41.s390x nss-sysinit-3.99.0-1.fc41.s390x nss-util-3.99.0-1.fc41.s390x openblas-0.3.26-4.fc40.s390x openblas-openmp-0.3.26-4.fc40.s390x openblas-openmp64-0.3.26-4.fc40.s390x pango-1.52.2-1.fc41.s390x pcre2-devel-10.43-1.fc41.s390x pcre2-utf16-10.43-1.fc41.s390x pcre2-utf32-10.43-1.fc41.s390x pixman-0.43.4-1.fc41.s390x pixman-devel-0.43.4-1.fc41.s390x python-pip-wheel-24.0-2.fc41.noarch python3-3.12.3-2.fc41.s390x python3-libs-3.12.3-2.fc41.s390x python3-packaging-24.0-1.fc41.noarch sysprof-capture-devel-46.0-1.fc41.s390x tcl-1:8.6.14-1.fc41.s390x tcl-devel-1:8.6.14-1.fc41.s390x tk-1:8.6.14-1.fc41.s390x tk-devel-1:8.6.14-1.fc41.s390x tre-0.8.0-43.20140228gitc2f5d13.fc40.s390x tre-common-0.8.0-43.20140228gitc2f5d13.fc40.noarch tre-devel-0.8.0-43.20140228gitc2f5d13.fc40.s390x ttmkfdir-3.0.9-70.fc40.s390x tzdata-2024a-5.fc41.noarch tzdata-java-2024a-5.fc41.noarch xdg-utils-1.2.1-1.fc41.noarch xml-common-0.6.3-63.fc40.noarch xorg-x11-fonts-Type1-7.5-38.fc40.noarch xorg-x11-proto-devel-2024.1-1.fc41.noarch xz-devel-1:5.4.6-3.fc41.s390x zlib-ng-compat-devel-2.1.6-2.fc40.s390x Complete! Finish: build setup for R-Rhtslib-1.28.0-7.fc41.src.rpm Start: rpmbuild R-Rhtslib-1.28.0-7.fc41.src.rpm warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1714003200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.AiS2Ec + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Rhtslib + /usr/bin/mkdir -p Rhtslib + cd Rhtslib + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Rhtslib_1.28.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/Rhtslib-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Rhtslib-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (R-Rhtslib-zlibbioc.patch): + echo 'Patch #0 (R-Rhtslib-zlibbioc.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .zlibbioc --fuzz=0 patching file Rhtslib/DESCRIPTION patching file Rhtslib/NAMESPACE Patch #1 (R-Rhtslib-buildroot-fix.patch): + echo 'Patch #1 (R-Rhtslib-buildroot-fix.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fix --fuzz=0 patching file Rhtslib/src/Makevars.common + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.SH8WXh + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.fMQyFg + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x ++ dirname /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + mkdir -p /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library Rhtslib * installing *source* package ‘Rhtslib’ ... ** using non-staged installation via StagedInstall field ** libs using C compiler: ‘gcc (GCC) 14.0.1 20240411 (Red Hat 14.0.1-0)’ cd "htslib-1.7" && make -f "/usr/lib64/R/etc/Makeconf" -f "Makefile.Rhtslib" make[1]: Entering directory '/builddir/build/BUILD/Rhtslib/Rhtslib/src/htslib-1.7' Makefile.Rhtslib:131: warning: overriding recipe for target '.c.o' /usr/lib64/R/etc/Makeconf:195: warning: ignoring old recipe for target '.c.o' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o knetfile.o knetfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.o hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.7"' > version.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.o hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.o sam.c sam.c: In function ‘bam_hdr_write’: sam.c:233:5: warning: ‘strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 233 | strncpy(buf, "BAM\1", 4); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.o cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.o cram/cram_index.c In file included from /usr/include/string.h:548, from cram/cram_index.c:57: In function ‘memcpy’, inlined from ‘kputsn’ at ./htslib/kstring.h:148:2, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.o cram/cram_io.c cram/cram_io.c: In function ‘cram_populate_ref’: cram/cram_io.c:2071:9: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 2071 | strncpy(path, path2, PATH_MAX); | ^ cram/cram_io.c:2178:34: warning: ‘.tmp_’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 2178 | sprintf(path_tmp, "%s.tmp_%d_%u_%u", path, pid, thrid, t); | ^~~~~ In file included from /usr/include/stdio.h:980, from cram/cram_io.c:49: In function ‘sprintf’, inlined from ‘cram_populate_ref’ at cram/cram_io.c:2178:6: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 11 and 4134 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cram/cram_io.c: In function ‘cram_write_SAM_hdr’: cram/cram_io.c:3677:13: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 3677 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c:3669:9: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 3669 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:4055:9: warning: ‘strncpy’ specified bound 20 equals destination size [-Wstringop-truncation] 4055 | strncpy(def->file_id, filename, 20); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_samtools.o cram/cram_samtools.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/files.o cram/files.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/rANS_static.o cram/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/sam_header.o cram/sam_header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.o hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1187:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1187 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:45: /usr/include/curl/curl.h:2879:3: note: declared here 2879 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o hfile_libcurl.o ranlib libhts.a gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.pico kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o knetfile.pico knetfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.pico kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.pico bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.pico bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.pico errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.pico faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.pico hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_net.pico hfile_net.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.pico hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.pico hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.pico md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.pico multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.pico probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.pico realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.pico regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.pico sam.c sam.c: In function ‘bam_hdr_write’: sam.c:233:5: warning: ‘strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 233 | strncpy(buf, "BAM\1", 4); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.pico vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.pico tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.pico textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.pico thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.pico vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.pico vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.pico cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.pico cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.pico cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.pico cram/cram_index.c In file included from /usr/include/string.h:548, from cram/cram_index.c:57: In function ‘memcpy’, inlined from ‘kputsn’ at ./htslib/kstring.h:148:2, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.pico cram/cram_io.c cram/cram_io.c: In function ‘cram_populate_ref’: cram/cram_io.c:2071:9: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 2071 | strncpy(path, path2, PATH_MAX); | ^ cram/cram_io.c:2178:34: warning: ‘.tmp_’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 2178 | sprintf(path_tmp, "%s.tmp_%d_%u_%u", path, pid, thrid, t); | ^~~~~ In file included from /usr/include/stdio.h:980, from cram/cram_io.c:49: In function ‘sprintf’, inlined from ‘cram_populate_ref’ at cram/cram_io.c:2178:6: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 11 and 4134 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cram/cram_io.c: In function ‘cram_write_SAM_hdr’: cram/cram_io.c:3677:13: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 3677 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c:3669:9: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 3669 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:4055:9: warning: ‘strncpy’ specified bound 20 equals destination size [-Wstringop-truncation] 4055 | strncpy(def->file_id, filename, 20); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_samtools.pico cram/cram_samtools.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.pico cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/files.pico cram/files.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.pico cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/rANS_static.pico cram/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/sam_header.pico cram/sam_header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.pico cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.pico hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1187:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1187 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:45: /usr/include/curl/curl.h:2879:3: note: declared here 2879 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-soname,libhts.so.2 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico hfile_libcurl.pico -lz -lm -lbz2 -llzma -lcurl -lpthread In function ‘memcpy’, inlined from ‘kputsn’ at htslib/kstring.h:148:2, inlined from ‘bcf_hdr_subset’ at vcf.c:3061:12: /usr/include/bits/string_fortified.h:29:10: warning: ‘__builtin_memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ In function ‘memcpy’, inlined from ‘kputsn’ at htslib/kstring.h:148:2, inlined from ‘kputs’ at htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘__builtin_memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ ln -sf libhts.so libhts.so.2 make[1]: Leaving directory '/builddir/build/BUILD/Rhtslib/Rhtslib/src/htslib-1.7' mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/include/htslib" cd "htslib-1.7/htslib" && cp * "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/include/htslib" && cd .. && cp textutils_internal.h hts_internal.h "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/include" gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ihtslib-1.7 -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_Rhtslib.c -o R_init_Rhtslib.o mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/usrlib" cd "htslib-1.7" && cp libhts.so libhts.a "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/usrlib" cd "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/usrlib" && ln -s libhts.so libhts.so.2 gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Rhtslib.so R_init_Rhtslib.o /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/usrlib/libhts.a -lcurl -L/usr/lib64/R/lib -lR In function ‘memcpy’, inlined from ‘kputsn’ at htslib-1.7/./htslib/kstring.h:148:2, inlined from ‘kputs’ at htslib-1.7/./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at htslib-1.7/cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘__builtin_memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/testdata/tabix" cd "htslib-1.7/test" && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/testdata" 2>/dev/null || true) && cd tabix && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/testdata/tabix" 2>/dev/null || true) installing to /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/Rhtslib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Rhtslib’ finding HTML links ... done Rhtslib-package html pkgconfig html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rhtslib) + test -d Rhtslib/src + cd Rhtslib/src + rm -f R_init_Rhtslib.o Rhtslib.so + rm -f /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x/usr/lib64/R/library/R.css + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.28.0-7.fc41 --unique-debug-suffix -1.28.0-7.fc41.s390x --unique-debug-src-base R-Rhtslib-1.28.0-7.fc41.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Rhtslib find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Rhtslib-1.28.0-7.fc41.s390x 3112 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.yDDy6N + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Rhtslib-1.28.0-7.fc41.s390x Provides: R(Rhtslib) = 1.28.0 R-Rhtslib = 1.28.0-7.fc41 R-Rhtslib(s390-64) = 1.28.0-7.fc41 libhts.so.2()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.4 R-core libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcurl.so.4()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0)(64bit) rtld(GNU_HASH) Suggests: R(BiocStyle) R(knitr) R(rmarkdown) Processing files: R-Rhtslib-devel-1.28.0-7.fc41.s390x Provides: R-Rhtslib-devel = 1.28.0-7.fc41 R-Rhtslib-devel(s390-64) = 1.28.0-7.fc41 R-Rhtslib-static = 1.28.0-7.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debugsource-1.28.0-7.fc41.s390x Provides: R-Rhtslib-debugsource = 1.28.0-7.fc41 R-Rhtslib-debugsource(s390-64) = 1.28.0-7.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debuginfo-1.28.0-7.fc41.s390x Provides: R-Rhtslib-debuginfo = 1.28.0-7.fc41 R-Rhtslib-debuginfo(s390-64) = 1.28.0-7.fc41 debuginfo(build-id) = 4aa58671b18bfd14d693e3926e134cf4c9c1843d debuginfo(build-id) = 8da40850238c21500fbfd70f3a1fe54b8e41feca libhts.so-1.28.0-7.fc41.s390x.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Rhtslib-debugsource(s390-64) = 1.28.0-7.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x Wrote: /builddir/build/RPMS/R-Rhtslib-debuginfo-1.28.0-7.fc41.s390x.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-devel-1.28.0-7.fc41.s390x.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-1.28.0-7.fc41.s390x.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-debugsource-1.28.0-7.fc41.s390x.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.VwObst + umask 022 + cd /builddir/build/BUILD + cd Rhtslib + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-7.fc41.s390x + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.2DnYmT + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Rhtslib-SPECPARTS + rm -rf Rhtslib Rhtslib.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Finish: rpmbuild R-Rhtslib-1.28.0-7.fc41.src.rpm Finish: build phase for R-Rhtslib-1.28.0-7.fc41.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-s390x-1714243800.246621/root/var/log/dnf.log /var/lib/mock/fedora-39-s390x-1714243800.246621/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-s390x-1714243800.246621/root/var/log/dnf.rpm.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Rhtslib-1.28.0-7.fc41.src.rpm) Config(child) 1 minutes 49 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Rhtslib", "epoch": null, "version": "1.28.0", "release": "7.fc41", "arch": "src" }, { "name": "R-Rhtslib-debuginfo", "epoch": null, "version": "1.28.0", "release": "7.fc41", "arch": "s390x" }, { "name": "R-Rhtslib-devel", "epoch": null, "version": "1.28.0", "release": "7.fc41", "arch": "s390x" }, { "name": "R-Rhtslib-debugsource", "epoch": null, "version": "1.28.0", "release": "7.fc41", "arch": "s390x" }, { "name": "R-Rhtslib", "epoch": null, "version": "1.28.0", "release": "7.fc41", "arch": "s390x" } ] } RPMResults finished